mRNA_H-canaliculatus_F_contig11959.1710.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: D7FZ71_ECTSI (AP2/ERF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ71_ECTSI) HSP 1 Score: 182 bits (461), Expect = 2.950e-49 Identity = 118/163 (72.39%), Postives = 122/163 (74.85%), Query Frame = 1
Query: 286 LAGEAFFRP---PSE------AXXXXXLAGAGAGSRAAPVSRSAAN--TGXXXXRRIGGDGXXXXXXXXXXXXXTGVLEPPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQE 741
LA EAF RP PS+ A XXX+AG AGSRA PVSRSAAN TG R+ G +G LE PVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQE
Sbjct: 57 LASEAFGRPYGPPSDDFAGGPAAAXXXVAGM-AGSRA-PVSRSAANAGTGAGRRRQRGEEGGGRAGGDES-------LEAPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQE 210
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A6H5LCQ5_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCQ5_9PHAE) HSP 1 Score: 179 bits (455), Expect = 6.150e-48 Identity = 112/169 (66.27%), Postives = 114/169 (67.46%), Query Frame = 1
Query: 286 LAGEAFFR---PPSE-----AXXXXXLAGAGAGSRAAPVSRSAANTGXXXXRRI---------GGDGXXXXXXXXXXXXXTGVLEPPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQE 741
LA EAF R PPS+ +A AG APVSRSAAN G RR GG G LE PVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQE
Sbjct: 39 LASEAFGRSYGPPSDDFAGGPAAAAEVAAAGMTVSRAPVSRSAANAGTGAGRREARPRSLREEGGGGAGGDES----------LEAPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADRVIAEQE 197
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A6H5JUY3_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY3_9PHAE) HSP 1 Score: 127 bits (318), Expect = 5.250e-30 Identity = 60/75 (80.00%), Postives = 68/75 (90.67%), Query Frame = 1
Query: 499 TPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEADR 723
T RRRGR+G+S+YRGVCVTREGKWRAVIYKERKQLYLGVYESE++AAKAHDRAARFHF D ++ NF +E EADR
Sbjct: 94 TTHRRRGRRGKSVYRGVCVTREGKWRAVIYKERKQLYLGVYESEVDAAKAHDRAARFHFADSAVCNFDSEHEADR 168
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A836CI56_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI56_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.090e-28 Identity = 54/64 (84.38%), Postives = 61/64 (95.31%), Query Frame = 1
Query: 508 RRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 699
RRRGRKG+SIYRGVCVTREGKWRAVIYKERKQLYLGV+ESE++AAKAHDRAAR+HF ++M NF
Sbjct: 21 RRRGRKGKSIYRGVCVTREGKWRAVIYKERKQLYLGVFESEIDAAKAHDRAARYHFGAQAMVNF 84
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A836CH07_9STRA (AP2/ERF domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH07_9STRA) HSP 1 Score: 100 bits (248), Expect = 5.730e-24 Identity = 46/54 (85.19%), Postives = 51/54 (94.44%), Query Frame = 1
Query: 538 YRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 699
YRGVCVTREGKWRAVIYKERKQLYLGV+ESE++AAKAHDRAAR HF D++M NF
Sbjct: 1 YRGVCVTREGKWRAVIYKERKQLYLGVFESEVDAAKAHDRAARQHFGDQAMVNF 54
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A6H5KQM0_9PHAE (AP2 protein ( ERFprotein ) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM0_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 2.850e-15 Identity = 43/75 (57.33%), Postives = 55/75 (73.33%), Query Frame = 1
Query: 490 PPVTPRR-----RRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 699
PPVTP R RRG +G+S ++GVC+TR GKWRAVIY RKQ YLGV++SE +AA+A+D AA HF + + NF
Sbjct: 387 PPVTPVRVQASGRRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNF 461
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A6V1UZI2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1UZI2_HETAK) HSP 1 Score: 82.4 bits (202), Expect = 4.570e-15 Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query: 490 PPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 699
P V RRG +G+S ++GVCVTR GKWR+VIY RKQLYLGV+E+E EAAKA+D +A +F D ++ NF
Sbjct: 136 PRVQSAGRRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNF 205
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A7S3Y6J2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6J2_HETAK) HSP 1 Score: 82.4 bits (202), Expect = 5.500e-15 Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query: 490 PPVTPRRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 699
P V RRG +G+S ++GVCVTR GKWR+VIY RKQLYLGV+E+E EAAKA+D +A +F D ++ NF
Sbjct: 149 PRVQSAGRRGPRGQSQFKGVCVTRAGKWRSVIYVGRKQLYLGVFETEQEAAKAYDNSAVKYFGDGAVLNF 218
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: A0A835ZDL0_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL0_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 2.920e-14 Identity = 42/71 (59.15%), Postives = 50/71 (70.42%), Query Frame = 1
Query: 505 RRRRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNFATEAEA 717
R RRGRKG+SIYRGV TREGK+RAV+Y ERKQ+YLGVY E+ AA+AHD+ H + NF E A
Sbjct: 123 RPRRGRKGKSIYRGVSHTREGKYRAVLYVERKQIYLGVYNDEVSAARAHDKGVLAHGLGHAYLNFKLEEAA 193
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Match: D8LFR4_ECTSI (Pathogenesis-related transcriptional factor and ERF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFR4_ECTSI) HSP 1 Score: 79.7 bits (195), Expect = 1.680e-13 Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1
Query: 511 RRGRKGRSIYRGVCVTREGKWRAVIYKERKQLYLGVYESELEAAKAHDRAARFHFPDKSMTNF 699
RRG +G+S ++GVC+TR GKWRAVIY RKQ YLGV++SE +AA+A+D AA HF + + NF
Sbjct: 341 RRGPRGQSRFKGVCITRAGKWRAVIYIGRKQKYLGVFDSEFDAARAYDAAALQHFAEGAKLNF 403 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11959.1710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig11959.1710.1 >prot_H-canaliculatus_F_contig11959.1710.1 ID=prot_H-canaliculatus_F_contig11959.1710.1|Name=mRNA_H-canaliculatus_F_contig11959.1710.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=247bp MLREAGASSEDDDEEGSGGGGGSGGGTRRNSSSSSNNNHNSSNSGGGIDAback to top mRNA from alignment at H-canaliculatus_F_contig11959:1511..3899+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig11959.1710.1 ID=mRNA_H-canaliculatus_F_contig11959.1710.1|Name=mRNA_H-canaliculatus_F_contig11959.1710.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2389bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11959:1511..3899+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11959:1511..3899+ >mRNA_H-canaliculatus_F_contig11959.1710.1 ID=mRNA_H-canaliculatus_F_contig11959.1710.1|Name=mRNA_H-canaliculatus_F_contig11959.1710.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1482bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11959:1511..3899+ (Hapterophycus canaliculatus Oshoro5f female)back to top |