mRNA_H-canaliculatus_F_contig11958.1709.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11958.1709.1
Unique NamemRNA_H-canaliculatus_F_contig11958.1709.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11958.1709.1 vs. uniprot
Match: A0A0B2USW7_TOXCA (Thioredoxin domain-containing protein 9-like protein n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2USW7_TOXCA)

HSP 1 Score: 95.9 bits (237), Expect = 4.020e-23
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    1 QENLSNGHGRYSELPDQPAFFEATKKSKWMAVHFYRPSTQRCQIVDGHLDRIAQKHLETR 180
            QE L NGHG+Y ELPD+PAFFEATKKS  M VHF+RPST+RC+IVD HL +IA +HLE R
Sbjct:   58 QEWLRNGHGKYEELPDEPAFFEATKKSNRMVVHFFRPSTERCKIVDMHLRKIAPRHLEAR 117
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BLAST of mRNA_H-canaliculatus_F_contig11958.1709.1 vs. uniprot
Match: A0A0M3J730_ANISI (TXNDC9 protein (inferred by orthology to a human protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3J730_ANISI)

HSP 1 Score: 87.0 bits (214), Expect = 1.240e-20
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 QENLSNGHGRYSELPDQPAFFEATKKSKWMAVHFYRPSTQRCQIVDGHLDRIAQKHLETR 180
            QE L NGHG Y ELPD+ AFF+ATKKS  +  HFYR ST+RC+IVD HL ++A KHLE R
Sbjct:   57 QEWLRNGHGEYEELPDERAFFDATKKSNKLIAHFYRTSTERCKIVDMHLSKLAPKHLEAR 116
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BLAST of mRNA_H-canaliculatus_F_contig11958.1709.1 vs. uniprot
Match: A0A0M3K1W2_ANISI (TXNDC9 protein (inferred by orthology to a human protein) n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3K1W2_ANISI)

HSP 1 Score: 87.0 bits (214), Expect = 1.130e-19
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 QENLSNGHGRYSELPDQPAFFEATKKSKWMAVHFYRPSTQRCQIVDGHLDRIAQKHLETR 180
            QE L NGHG Y ELPD+ AFF+ATKKS  +  HFYR ST+RC+IVD HL ++A KHLE R
Sbjct:   57 QEWLRNGHGEYEELPDERAFFDATKKSNKLIAHFYRTSTERCKIVDMHLSKLAPKHLEAR 116
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BLAST of mRNA_H-canaliculatus_F_contig11958.1709.1 vs. uniprot
Match: A0A0M3IGL4_ASCLU (Thioredoxin domain-containing protein n=3 Tax=Ascaris TaxID=6251 RepID=A0A0M3IGL4_ASCLU)

HSP 1 Score: 86.3 bits (212), Expect = 2.070e-19
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 QENLSNGHGRYSELPDQPAFFEATKKSKWMAVHFYRPSTQRCQIVDGHLDRIAQKHLETR 180
            QE L  GHG Y ELPD+ +FFEATKKS     HF+RPST RC+IVD HL RIA +H+ETR
Sbjct:   58 QEWLLKGHGEYEELPDERSFFEATKKSSRFVAHFFRPSTDRCKIVDMHLKRIASQHMETR 117
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BLAST of mRNA_H-canaliculatus_F_contig11958.1709.1 vs. uniprot
Match: A0A7S2FZE2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FZE2_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.420e-19
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 QENLSNGHGRYSELPDQPAFFEATKKSKWMAVHFYRPSTQRCQIVDGHLDRIAQKHLETR 180
            Q+N+SNGHGRY EL DQ  FF+A+K SK + VHFYR +T RCQI+D HLD +AQ H ETR
Sbjct:   72 QKNISNGHGRYMELSDQKEFFQASKDSKQLCVHFYRSTTFRCQILDRHLDILAQTHPETR 131
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BLAST of mRNA_H-canaliculatus_F_contig11958.1709.1 vs. uniprot
Match: A0A1D1W5V9_RAMVA (Thioredoxin domain-containing protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1W5V9_RAMVA)

HSP 1 Score: 82.8 bits (203), Expect = 4.340e-18
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 QENLSNGHGRYSELPDQPAFFEATKKSKWMAVHFYRPSTQRCQIVDGHLDRIAQKHLETR 180
            QE  SNGHG Y+ELPD+  FF+A KKS  +  HFYRP+T RCQIVD HL  +A +HLETR
Sbjct:   56 QEWRSNGHGVYTELPDEKEFFQAGKKSNKLVCHFYRPTTLRCQIVDKHLQLLAPQHLETR 115
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BLAST of mRNA_H-canaliculatus_F_contig11958.1709.1 vs. uniprot
Match: A0A836CBP1_9STRA (ATP binding protein-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBP1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.070e-17
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 QENLSNGHGRYSELPDQPAFFEATKKSKWMAVHFYRPSTQRCQIVDGHLDRIAQKHLETR 180
            QE  +NGHGR SEL DQ  FF A KKS  MAVHFYRP+T RC IVD  ++R+A +H+ETR
Sbjct:   63 QEWRANGHGRCSELSDQGEFFAAAKKSSSMAVHFYRPTTARCAIVDARMERLAPRHVETR 122
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BLAST of mRNA_H-canaliculatus_F_contig11958.1709.1 vs. uniprot
Match: A0A0N5ASC2_9BILA (Thioredoxin domain-containing protein n=1 Tax=Syphacia muris TaxID=451379 RepID=A0A0N5ASC2_9BILA)

HSP 1 Score: 80.5 bits (197), Expect = 1.580e-17
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:    1 QENLSNGHGRYSELPDQPAFFEATKKSKWMAVHFYRPSTQRCQIVDGHLDRIAQKHLETR 180
            QE L NGHG+Y ELPD+ AFF+ATKKS  +  HFY  +T+RC+IVD HL  IA K+L+TR
Sbjct:   57 QEWLINGHGKYEELPDERAFFDATKKSDKVVCHFYLSTTERCRIVDKHLKLIAPKYLQTR 116
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BLAST of mRNA_H-canaliculatus_F_contig11958.1709.1 vs. uniprot
Match: A0A4U5N600_STECR (Phosducin domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5N600_STECR)

HSP 1 Score: 80.1 bits (196), Expect = 5.200e-17
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 QENLSNGHGRYSELPDQPAFFEATKKSKWMAVHFYRPSTQRCQIVDGHLDRIAQKHLETR 180
            QE L+NGHG+Y ELPD+ AFFEATKKS  +  HFY+ S  RC+IV  HL ++A K++ TR
Sbjct:   54 QEMLNNGHGKYEELPDERAFFEATKKSDRVVCHFYQESEMRCKIVHKHLQKLASKYMSTR 113
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11958.1709.1 vs. uniprot
Match: A0A7S4FPP3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FPP3_9EUGL)

HSP 1 Score: 78.2 bits (191), Expect = 9.620e-17
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 1 
Query:    1 QENLSNGHGRYSELPDQPAFFEATKKSKWMAVHFYRPSTQRCQIVDGHLDRIAQKHLETR 180
            +E + NGHG YSE+ DQ  FF+A KKS  M VHFYRP+T RC++VD HL+ + + H ET+
Sbjct:   74 EEYVRNGHGVYSEISDQREFFDAAKKSSRMIVHFYRPTTWRCEVVDKHLETLCRTHYETK 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11958.1709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0B2USW7_TOXCA4.020e-2371.67Thioredoxin domain-containing protein 9-like prote... [more]
A0A0M3J730_ANISI1.240e-2065.00TXNDC9 protein (inferred by orthology to a human p... [more]
A0A0M3K1W2_ANISI1.130e-1965.00TXNDC9 protein (inferred by orthology to a human p... [more]
A0A0M3IGL4_ASCLU2.070e-1965.00Thioredoxin domain-containing protein n=3 Tax=Asca... [more]
A0A7S2FZE2_9STRA3.420e-1965.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1D1W5V9_RAMVA4.340e-1863.33Thioredoxin domain-containing protein n=1 Tax=Rama... [more]
A0A836CBP1_9STRA1.070e-1763.33ATP binding protein-like protein n=1 Tax=Tribonema... [more]
A0A0N5ASC2_9BILA1.580e-1761.67Thioredoxin domain-containing protein n=1 Tax=Syph... [more]
A0A4U5N600_STECR5.200e-1758.33Phosducin domain-containing protein n=1 Tax=Steine... [more]
A0A7S4FPP3_9EUGL9.620e-1755.00Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11958contigH-canaliculatus_F_contig11958:125..1016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score80.5
Seed ortholog evalue3e-13
Seed eggNOG ortholog6500.XP_005112130.1
Preferred nameTXNDC9
GOsGO:0000226,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006725,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0008152,GO:0008616,GO:0009058,GO:0009116,GO:0009119,GO:0009163,GO:0009987,GO:0015630,GO:0016043,GO:0018130,GO:0019438,GO:0030496,GO:0034404,GO:0034641,GO:0034654,GO:0042455,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046116,GO:0046483,GO:0055086,GO:0071704,GO:0071840,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659
EggNOG free text desc.queuosine biosynthetic process
EggNOG OGs39ZXY@33154,3BKC2@33208,3CUX1@33213,COG0526@1,KOG1672@2759
COG Functional cat.CO
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928899.3048372-CDS-H-canaliculatus_F_contig11958:124..2081622928899.3048372-CDS-H-canaliculatus_F_contig11958:124..208Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11958 125..208 +
1696845606.0450704-CDS-H-canaliculatus_F_contig11958:124..2081696845606.0450704-CDS-H-canaliculatus_F_contig11958:124..208Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11958 125..208 +
1622928899.3236213-CDS-H-canaliculatus_F_contig11958:920..10161622928899.3236213-CDS-H-canaliculatus_F_contig11958:920..1016Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11958 921..1016 +
1696845606.0597708-CDS-H-canaliculatus_F_contig11958:920..10161696845606.0597708-CDS-H-canaliculatus_F_contig11958:920..1016Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11958 921..1016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11958.1709.1prot_H-canaliculatus_F_contig11958.1709.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11958 125..1016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11958.1709.1

>prot_H-canaliculatus_F_contig11958.1709.1 ID=prot_H-canaliculatus_F_contig11958.1709.1|Name=mRNA_H-canaliculatus_F_contig11958.1709.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=60bp
QENLSNGHGRYSELPDQPAFFEATKKSKWMAVHFYRPSTQRCQIVDGHLD
RIAQKHLETR
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mRNA from alignment at H-canaliculatus_F_contig11958:125..1016+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11958.1709.1 ID=mRNA_H-canaliculatus_F_contig11958.1709.1|Name=mRNA_H-canaliculatus_F_contig11958.1709.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=892bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11958:125..1016+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGAAAATCTTTCGAACGGGCACGGCAGGTACTCCGAGCTACCAGACCA
ACCCGCATTTTTCGAAGCCACCAAAAAGAGCAAGGTACTGCATGCAAACC
AGGGTGTCCAAGCCTTTTTCGTGGTCTGCCGAAGAGAGAGCGCGCGTTGG
AGAGGAGTCGGACCGCGCTCTCTCTCTTTTTTCTTCTTTTTTCTCGAGAG
TTTTCTCCGTGCGCCATGAAAGCGCGTCGCACGTGAACCGCGGAAACTCC
GCTTCTTTAGTAGTCCTCGTCGGCGGTGGGTCACTTCCAACTCCTGGGAA
TCCCCTCATTCTCACACGTTTGTTTGCTCGGTTTCCTGGAGAACGGCGAC
ATGGATTTCTAGTGTTTTTTTCTTGTCTGATCTACTGAAATATGTCATCT
CCTCACATCGGGGGAATGCGAAAGTAAGATCTGAACATAATTTCGTCGTC
TTGGTTTTGAAGTATAGTACCCCAAAAGCTGTTGTCATTCACGACGGTGT
TTGACCGTAGAGACACGGACCGCCGATGCTGTGTTCCTTCTAACCTTCTT
CATTGCTCGCGCGAGTTTTTTGTAATTTTTTCGTGGAGGGGGTGTCGAGG
ACGGAGTTCTTTTCGCGGAATGATATGGTACGTCGTCCCACCGTTACAAT
TCTGCCTCTTCTCTCTCCCGTGAGACCTAGATGCCGGCGGTCGTAAGGCC
CCGTTCCTATCTTCGTGCCTTTTCCTTTCGATCCCTGCCTGAGACCCACC
CCTCCGCCCCCCGTTTTCCGTGTTTTTGTCTAATTTTGTTGCCCAGTGGA
TGGCGGTGCACTTCTACCGCCCGTCGACACAAAGATGCCAGATTGTGGAT
GGACACCTCGATCGCATCGCCCAGAAGCACCTGGAGACCAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11958:125..1016+

>mRNA_H-canaliculatus_F_contig11958.1709.1 ID=mRNA_H-canaliculatus_F_contig11958.1709.1|Name=mRNA_H-canaliculatus_F_contig11958.1709.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=360bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11958:125..1016+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGAAAATCTTTCGAACGGGCACGGCAGGTACTCCGAGCTACCAGACCA
ACCCGCATTTTTCGAAGCCACCAAAAAGAGCAAGCAGGAAAATCTTTCGA
ACGGGCACGGCAGGTACTCCGAGCTACCAGACCAACCCGCATTTTTCGAA
GCCACCAAAAAGAGCAAGTGGATGGCGGTGCACTTCTACCGCCCGTCGAC
ACAAAGATGCCAGATTGTGGATGGACACCTCGATCGCATCGCCCAGAAGC
ACCTGGAGACCAGGTGGATGGCGGTGCACTTCTACCGCCCGTCGACACAA
AGATGCCAGATTGTGGATGGACACCTCGATCGCATCGCCCAGAAGCACCT
GGAGACCAGG
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