mRNA_H-canaliculatus_F_contig1195.1706.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1195.1706.1
Unique NamemRNA_H-canaliculatus_F_contig1195.1706.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1195.1706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1195contigH-canaliculatus_F_contig1195:14612..20081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size318
Cds size174
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1195.1706.1prot_H-canaliculatus_F_contig1195.1706.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1195 17729..20081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928898.6206698-UTR-H-canaliculatus_F_contig1195:14611..146951622928898.6206698-UTR-H-canaliculatus_F_contig1195:14611..14695Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1195 14612..14695 -
1696845605.7938905-UTR-H-canaliculatus_F_contig1195:14611..146951696845605.7938905-UTR-H-canaliculatus_F_contig1195:14611..14695Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1195 14612..14695 -
1622928898.6378095-UTR-H-canaliculatus_F_contig1195:17668..177281622928898.6378095-UTR-H-canaliculatus_F_contig1195:17668..17728Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1195 17669..17728 -
1696845605.8048177-UTR-H-canaliculatus_F_contig1195:17668..177281696845605.8048177-UTR-H-canaliculatus_F_contig1195:17668..17728Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1195 17669..17728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928898.6627185-CDS-H-canaliculatus_F_contig1195:17728..178141622928898.6627185-CDS-H-canaliculatus_F_contig1195:17728..17814Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 17729..17814 -
1696845605.8137002-CDS-H-canaliculatus_F_contig1195:17728..178141696845605.8137002-CDS-H-canaliculatus_F_contig1195:17728..17814Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 17729..17814 -
1622928898.718457-CDS-H-canaliculatus_F_contig1195:19993..200811622928898.718457-CDS-H-canaliculatus_F_contig1195:19993..20081Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 19994..20081 -
1696845605.8213365-CDS-H-canaliculatus_F_contig1195:19993..200811696845605.8213365-CDS-H-canaliculatus_F_contig1195:19993..20081Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1195 19994..20081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1195.1706.1

>prot_H-canaliculatus_F_contig1195.1706.1 ID=prot_H-canaliculatus_F_contig1195.1706.1|Name=mRNA_H-canaliculatus_F_contig1195.1706.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=58bp
RAGPRGGPHRPSVEPDTAAVAFNVQPIEAEPTVEAGGYRGAPRSLVRRAV
RLAMGQR*
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mRNA from alignment at H-canaliculatus_F_contig1195:14612..20081-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1195.1706.1 ID=mRNA_H-canaliculatus_F_contig1195.1706.1|Name=mRNA_H-canaliculatus_F_contig1195.1706.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5470bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1195:14612..20081- (Hapterophycus canaliculatus Oshoro5f female)
AGAGCTGGCCCGCGAGGTGGACCTCATCGGCCAAGCGTCGAGCCGGACAC
GGCAGCTGTCGCCTTCAACGTCCAGCCGATCGAAGCAGGTAGTTTGCATA
TGTGCGGCATGGTGGCTTTCAGAATGGGAAGCAGCTTGGTTCGAGTGTAG
CCTGTACCACATCCGTACCCTATGGATTGTGCTGTTGGTAAAGTATTTCG
TATCCCAAAGAGGTGAAGGTTGCACCTTTCTCTCTTCGTCACGTCACCGC
GCAGGGCCGCTGGTCGCTCAATCCGCCCGTGCTCAGCTCCTGGCTAGAAA
ATTATATTTTCCGCCCATGTGGTGCCTTGAGAATCGCCATGGGGGGGGGT
CACTCGCGTGTTCCGAAGCGCACATGGAGTGTCGCTCTCGTCTCCAAGAT
CGATTGTTGAGAGGCACCCAGGTTAGATTGCTTTTTCAAACCTTTGAAGG
AAGACAGGTCTCTCGGATCCCTCTGCTTTCTCCTAAATCAGCCGGCAAGT
GTTTTTATTTGTCTGTCCTGGGACGAGGCCGACATAAACATCTTGAGTCT
AGAACACCTGGACCAAGAGTATCTCCGACGACGACAACGGATTGCGGCTA
TCCATGATGGTTGGAAACTGTGAGCGCGAACGCGTACATCCGCTCTTCTT
GGGACCTCTCGAGTCGGCGAGCGAGACTTTTGCCGGGCAGCTTGGTCACG
CACGACGGTCACATACCCACCTTCCCGATCTTACCGCCAAAGTATGTTTA
CGACTACTGCACTCATCCTCAGCAGAACAGAAGTCCAAAAAAACTCAAGA
CCTGTCTTCTTCGAATGGCATCCTCGAGCGGGGAAAACACAGACCGTCTT
AGGGACACGAACGCAGGCCTAGCACCATGCTCACGCCATCCAACTGTTCG
GCAAAACGCGTAGCGCTTTCTATTACCCCCCCGAGAGGCATCAACACTGC
CGACGGTCCATTCCCTAGACTGGTCAGTGGTGCCTAGTTGGGCTCCCCGT
CTCCACCGCGGACGGCTGACTCGATGAACTCATCGACAAGCTTATTAGCT
ACGACCTTGAGCACCTTCCCCTCGATAGCCTCCGGGATGAATGAGAGGTC
CACGCGCTCGTTGAGTTGCTTTGAGAGCGGGCCCGAGAGCTGACCACGCA
GGATTTTGGACATGCCCTCCTTCCTAGGAGATGAGTGCGGGAAAAAGAAA
AAGCAGAAAAAAACGGAGTGCTGACGTGATTGGTGGTGGGTGAACTATTT
GCTCGGCGTACAAGTACTAATGATGGAACGACGCAGCTTTCCGATTTCGA
GTGTCCGATATTTGGCGAAGCAGCGCAGCGGAGTGGGACCCACGTTCTCG
CTTTTCGGGTGCGTCGCTCGCTTTTCGGGTGCGTCGCTGCGCGTTTCACC
CAAAAATAACATCTGCGACCCTTCCCTTCGTCGTATAATTCCACTCACCT
CTCGTGAGGTTGGTAGTTGCTTTACAGCAAGGCCGGAAAATGCGCGCCTC
ACGATCAAGGTACACAAGCGGGTTGATCTACAATCACCCGTAGCATTAAT
AAATCGTAAGAACAAGGACAAAATGTGTTTGAAGGGGGTTGGATGTCGGC
CTTTTGAGCCCCAACAGAAGAGGATGCAACTAAAGGCGCTCCCGGTATCT
AGGACGATGCCAGTATCAAGTACGGCATCGTAAGCATCCTGGAAACAGTT
CATTGCCAATATCGTAAGCGTCCGCATCCGGTATTACCCCAAATCACTAG
TTTTCGCCAGCATTACCATGTTCGAGAACATACCCAGTGTCGTCGATACA
GTTTTGGTCCGCTAATGAGGAACCAGTTACCAGGTTCAGCCTGTCTCTTT
TGTTCATTGCAAACATCTGTTTAGTATTTTGGCATGAAGCATGCCCTTTC
AACTCGAATCGGTTGACACCACCTGCCGTGCTTTCTGCACCTTTACGCCT
GAAAAAAGTACTCCGGGTGATGCACTTTTATGTTTATGAAGGAGCGTAGC
GGTTGCCGATCAAGCGAACACGAGGTCTACGTCCTTTAACACCGATGAAC
CAGCGTGACCAAAGTTGGTGAACGTCAAACACTTTCTAATCAGTGAGACG
CCCCACGACCGGGCAAGCTCTGCCACTAGATCTTGTGGCTCTCGAGATGA
CACGCTTGCGCCTACCCGGGCCTTTCCCTCCCCAACACTCATCGGTGCCA
CGCCCTTTTCTTTTTGCCACACCCTCTTCGTCCTGTTCGTTTCCCCCCTC
CCCGTTCTCTTCGTCAGAACCCACGGTGGAAGCAGGGGGCTATAGAGGCG
CCCCAAGATCCCTCGTCCGAAGGGCCGTTCGCCTAGCAATGGGTCAACGG
TAACTTCGCGCTTTGTGTGCCACCTTCTGCTACAAAAGCATCCTGTACTC
ATAGAGATGACAGGTGCGCGCTTGAGTACGAGGTGTTGTGGTCCCCTTCA
GCCACCCGATATCCGGCCGCAGCACTATCGATCGCTTGGCTAGTGCTGCG
GTAAGCGCGACAGGCGTTCGGCTCTCCAGGGCATATCTAGCTGGCATAAC
GAGAGGAAGGGTTTTCTTGTTTTCGCGTAGGCCATCGTTGATGTGCAGGA
ACTCAAGTTCGTCGTTGGTCCAACTGTCACTTCCATCCCCCCTCCCGATC
CGAATCACCCTCCTAGTCGCTGGATCCCAGGGGCTGTTTCTCGCCTCAGG
GAGTAGGCGAGACCGGACGCGCATTTTCCAGCGGCTCTGGCGTGACATCC
TCGCCCATGAGCGATATATTTCACTGCATCGCCGACCTACTGCGTGACAG
AGATCTTGCCTGAAAAACAGTTCGCTTAGTCGACTATCACAGGTCTACAT
GGCCTACCTCCAACAGCCACGTGTTGAGGGCCTTCCCCGCTTCAACCCAT
ACAACGTCGTCCGTAGCGTATCTCAAGAACCTGGATCTCGTAAGTGCACC
CTACGTAGACAAAAATAAGGCAGAGCAGTGCGTTGCCTTTTTAACCAGCA
CTCAAATTAACCCGTCTGTATTCGGGCGCTGTCAAGATTATTCGCGAGTA
ACTTTGACTTCTTCTTGGGAACGTCTAAAGAAGAGTCGAACACGCTTCGC
TGTAGGTCGGTGTGCGTGTGTGCGTGTGGAAATATGGGGATGCACGTGCC
CCACGGTAGTGAGCCTGGTCTAGGCTAGGCAGGGGAAGACGTCAAAAATG
TTATCTTCTTGAAAATACCCACCCTGGGCACTTTAAATTGGTACTACATC
TCAGCCTGAGTTTCTTCTACACCGCTCTTTTACGAGCCAGCCGGTACTTT
ATTCAATACTGCAGCGGAAATTCCCAGCTTGAACAGTATCCGCCGGTTTG
AAACGGAAAGTACCCGGTGTCGCTAGTATCCACCAGTACAACGGGAAAAT
ACCCAGTCTCACCACCATCCGGCGGAGTGATGCAGCCAAATACCCTTTGT
GGCCAACGTCTACCGGTATGAAACTAGAAAAACCTGGGAACCCCTTTACT
TTCGACAGGAGTCTTCGGAATGAGTCCTATCACTCCACACTGCAAGAGGC
AGAAAGAGGTCGTACATTTACTTAAGGTTAGCATCGATGGTTGTTTTATC
TGCGCCTTGCCTGACAGAGCACCTCTTTTAATCTGCTAACCATTCGTGAG
ACCGCTGCAGTTTCGACCGACTCCATACACTTCTTGAAACCCGGCATGAA
GTGAAACTGACCTTTCAGTTGCAGACAAACTTTCGTTGAGTCCGATCTTG
ATCAAGTCCACGTATGCCCCCGGCATGAGTGCATGAAGGGAAAACTCCAT
CTGGGGAACAACCTTGTCACGCATGGTGCGGATCGTGTGGCGTATCAGTA
GAAGGTAGACCAGCGATGGGCCTCAGTTCTTTGTCGAACGCCAAGTCTAA
TATACAGCAGGACACGCGGAAACCGTGCAAGTTGAAAAGGAGTCGTGGCT
GATGGTCAACAACGGACTTCCAAACCAATCAGAAGCGAAAAATGCTAGGG
AGAGCTTTAGCGAAACATGTTGGTTTCGTCGCTTCTCTTTCTGTTGTCAG
TCGCTGCCCTCCATCGAAGGATAAATGTTCAGTCATCTCCGATTGGCGCG
TTCTGGCATAAAGGTCGAACACGTACACCGAGGGGACAATTCGGTCATGA
TCGGCGTCCTGTAGACGTTCGTACCCAAACGCGTCGACAAGAGCCAAATA
CCTTGTTGAGAAGATTTTCGATAAATTTCCTTTCCATCCCCTCTGTCGCG
AAAGGAACATCCACGTCCAGGTTCACCTTGTCAATCACCGCCTGTCCAAC
AGTCAATGAGGATGCCCAGGGGGCAAATCAATACCAAGTAGAATGACCGC
GTACATAGGGGAGCGAGAGTTGGACCATACATGCTGGCGTGCTTCCTCGG
GCTTCTTGGCGCTGCCTTGTTCAAGGCGCCCCAACCTATTCGCTGCTCAT
GTTCAAACACAGGTATATGTGCCACCTCTGCGGCGGAAAAAAGCAGGCGG
TAAAAATCCACAATCCCGCTGCTGGATTCCGGTCCAAACACGGCATTTAC
CATGAGATTGCCACACAAACCGGGCCATTCAAGGCCAAGGGCATCGCCTT
GACACCCGTACGTGCCGTGGGATGTGATTCAACGTATGTGAAATACTTGT
CCACCATCACACCAAACACTAAACACCCCACTCTACTTGTTTTTTGTAGG
AGACAGAAAATCCTTGAAGGGAGTGAAACCATTTACTCCTGAAAATACGT
CCGACAAAACACGGCGTTGCGAAACGGATCGGTTTTCAACACTTGCCTTG
GTCTGCCTCTCGTTCAACATCGTGCCGATCCTGCGTAGGGGTCTGTCCTC
TGAAGGATGAAGGGTGACGTGGAGGTTTCCGAGTTGCCCGATTGAGAAGA
GCCCTGCACGATGGAAAGCGATAAGCCGAAGCGCACAATGAAGGAGTCGA
GCCATGAACCAGAACCGGACAGCCGACAGCGTACAGAAATTAGTTTCCCG
AGGTTGCAGTCACGATTACCCAGCTCAGTGGTTCACGTTTGCCGTGTGGT
GCTTGTCGTTCGGAAGGGAGCTCCTCATTCCACTCACACTGCGAGGCTCA
CCTAAAATGCATCAGGTTTTTTCCTTCAGGGGGCCGACAGAATTCAGACT
TCAGACATCAAAACGACGATGGATATCGATTCATTACGCGCTACGACACT
GGCCAGCACGCCTAGCTAACCGATGTGACTCAAGGACCTTTCACAGAAAG
CAAGCGAAAGCTCTTTCGACGACCCGGCATCAACACGCTGGGAACCACTT
TTCGAAATGCCTCATGAGTCAACTGGCCTATGTCAGAACAGGCCTTTGGG
AAATATTGTTTCCCTCCAATCAACTGGCGAATGCAGCGTTGATGTTTGCT
CAGAGGAAACAATGCCTCGCAGTGGACGAGAGGGGGCAACGACAGGCAAA
GGGGGCAAGCTCGTGATTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1195:14612..20081-

>mRNA_H-canaliculatus_F_contig1195.1706.1 ID=mRNA_H-canaliculatus_F_contig1195.1706.1|Name=mRNA_H-canaliculatus_F_contig1195.1706.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1195:14612..20081- (Hapterophycus canaliculatus Oshoro5f female)
AGAGCTGGCCCGCGAGGTGGACCTCATCGGCCAAGCGTCGAGCCGGACAC
GGCAGCTGTCGCCTTCAACGTCCAGCCGATCGAAGCAGAGAGCTGGCCCG
CGAGGTGGACCTCATCGGCCAAGCGTCGAGCCGGACACGGCAGCTGTCGC
CTTCAACGTCCAGCCGATCGAAGCAGAACCCACGGTGGAAGCAGGGGGCT
ATAGAGGCGCCCCAAGATCCCTCGTCCGAAGGGCCGTTCGCCTAGCAATG
GGTCAACGGTAAAACCCACGGTGGAAGCAGGGGGCTATAGAGGCGCCCCA
AGATCCCTCGTCCGAAGGGCCGTTCGCCTAGCAATGGGTCAACGGTAA
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