prot_H-canaliculatus_F_contig1194.1700.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1194.1700.1
Unique Nameprot_H-canaliculatus_F_contig1194.1700.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length71
Homology
BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: D7G710_ECTSI (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G710_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 6.130e-41
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0
Query:    1 MSTGYRSSKGVLITCDVPTKQFIMSLDSRLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPRS 70
            MSTGYRSSKGVLITCDVPTKQFIMSLD+RLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPR+
Sbjct:    1 MSTGYRSSKGVLITCDVPTKQFIMSLDARLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPRT 70          
BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: A0A835ZC95_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC95_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.960e-17
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 0
Query:    1 MSTGYRSSKGVLITCDVPTKQFIMSLDSRLA--CVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVR 67
            MS    S KGVLITCDVPTKQFI+ L+S+ A   +++DLD TH+FV+  +V EI+ +LE+L E NVYVR
Sbjct:    1 MSNVRTSRKGVLITCDVPTKQFILHLNSKQAQGFIINDLDETHLFVEASAVHEIREQLERLQEMNVYVR 69          
BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: A0A383WPN6_TETOB (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WPN6_TETOB)

HSP 1 Score: 57.4 bits (137), Expect = 2.450e-9
Identity = 26/67 (38.81%), Postives = 46/67 (68.66%), Query Frame = 0
Query:    7 SSKGVLITCDVPTKQFIMSLDS-----RLACVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRP 68
            ++ G L+TCDVPTK+F++ L++     + A ++ +LD TH+ VK+D V+ +Q +++  + KNVY  P
Sbjct:    4 ATSGALLTCDVPTKEFLVWLNNQNKATKRAFIIKELDDTHLLVKEDMVEFVQEQVKAFNNKNVYTPP 70          
BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: A0A6T6HXU1_9STRA (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A6T6HXU1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.130e-9
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 0
Query:    7 SSKGVLITCDVPTKQFIMSLDSRLAC----VVSDLDATHVFVKKDSVKEIQRELEQLHEKNVY 65
            +S G LITCDVPTKQ+I  L+   A     ++ DLDATH+ VKK +  EI+R +E   ++NV+
Sbjct:   36 ASAGYLITCDVPTKQYIQYLNEMKAVDKKFIIEDLDATHLLVKKKARAEIERRVESWMDENVF 98          
BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: A0A2V3IN38_9FLOR (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN38_9FLOR)

HSP 1 Score: 57.8 bits (138), Expect = 4.410e-9
Identity = 26/62 (41.94%), Postives = 45/62 (72.58%), Query Frame = 0
Query:    7 SSKGVLITCDVPTKQFIMSLDSRLA--CVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYV 66
            ++ GVLI+CD+P KQF++ +D +     ++SDLD THV VK+ ++  I+ +L++L+E+N Y 
Sbjct:   50 ATAGVLISCDIPVKQFLLHVDEKDTGKFIISDLDETHVLVKESALDYIKSQLDKLYEENQYT 111          
BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: M2VWH3_GALSU (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VWH3_GALSU)

HSP 1 Score: 56.2 bits (134), Expect = 6.210e-9
Identity = 27/60 (45.00%), Postives = 44/60 (73.33%), Query Frame = 0
Query:    9 KGVLITCDVPTKQFIMSLDSRLA---CVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVY 65
            +GVLITCD+P KQFI+ LD   A    V+++LD T +F++  ++K +Q +LE+L+E+N +
Sbjct:    6 RGVLITCDIPMKQFILKLDEDQAPNRFVIANLDETSLFIQSWALKLVQEKLEELYEENYF 65          
BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: I0Z2U2_COCSC (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Coccomyxa TaxID=41891 RepID=I0Z2U2_COCSC)

HSP 1 Score: 53.1 bits (126), Expect = 1.070e-7
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 0
Query:    9 KGVLITCDVPTKQFIMSLDSRLAC----VVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRPR 69
            +GVL+ CDVPTK+FI+SL+         V+ DLD T +FV+   V+ +++ L++ +E+N Y  PR
Sbjct:    2 RGVLLQCDVPTKEFILSLNDSKPTNERFVILDLDDTRLFVQPTVVEWLEKRLKEFNEENTYQPPR 66          
BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: A0A1X6PEZ7_PORUM (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEZ7_PORUM)

HSP 1 Score: 52.4 bits (124), Expect = 2.050e-7
Identity = 27/62 (43.55%), Postives = 42/62 (67.74%), Query Frame = 0
Query:    7 SSKGVLITCDVPTKQFIMSLDSRLA---CVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVY 65
            ++ GVL+TCDVP KQF++ LD+  A    +V+ LD TH+F+   +V  I+ +LE+L  +N Y
Sbjct:    4 ATHGVLVTCDVPVKQFLLKLDNDRAPDRFIVAKLDETHLFIHAWAVDMIKDQLERLFAENQY 65          
BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: B5Y3U5_PHATC (General transcription and DNA repair factor IIH subunit TFB5 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3U5_PHATC)

HSP 1 Score: 50.8 bits (120), Expect = 2.100e-6
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 0
Query:    8 SKGVLITCDVPTKQFIMSLDSRLAC----VVSDLDATHVFVKKDSVKEIQRELEQLHEKNVY 65
            S G L++CDVPTKQFI  L+         ++ DLDATH+ V+  +  EI+R++E+  + NV+
Sbjct:   37 SAGYLVSCDVPTKQFIQHLNDLKPVDKKFILQDLDATHLLVELKARDEIRRKVEEWEDSNVF 98          
BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Match: A0A1Y1ILP3_KLENI (General transcription and DNA repair factor IIH subunit TFB5 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ILP3_KLENI)

HSP 1 Score: 49.7 bits (117), Expect = 2.430e-6
Identity = 24/64 (37.50%), Postives = 40/64 (62.50%), Query Frame = 0
Query:    9 KGVLITCDVPTKQFIMSLDSRLA----CVVSDLDATHVFVKKDSVKEIQRELEQLHEKNVYVRP 68
            KG+LI CD+P KQFI+S++ +L      ++ DLD TH+FV+      +Q +++   +K  Y +P
Sbjct:    6 KGILIECDIPMKQFIVSINDQLPNAQKFIIYDLDDTHLFVQPHVADMLQNKVKDFLDKITYEKP 69          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1194.1700.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7G710_ECTSI6.130e-4197.14General transcription and DNA repair factor IIH su... [more]
A0A835ZC95_9STRA7.960e-1757.97General transcription and DNA repair factor IIH su... [more]
A0A383WPN6_TETOB2.450e-938.81General transcription and DNA repair factor IIH su... [more]
A0A6T6HXU1_9STRA4.130e-947.62General transcription and DNA repair factor IIH su... [more]
A0A2V3IN38_9FLOR4.410e-941.94General transcription and DNA repair factor IIH su... [more]
M2VWH3_GALSU6.210e-945.00General transcription and DNA repair factor IIH su... [more]
I0Z2U2_COCSC1.070e-741.54General transcription and DNA repair factor IIH su... [more]
A0A1X6PEZ7_PORUM2.050e-743.55General transcription and DNA repair factor IIH su... [more]
B5Y3U5_PHATC2.100e-641.94General transcription and DNA repair factor IIH su... [more]
A0A1Y1ILP3_KLENI2.430e-637.50General transcription and DNA repair factor IIH su... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009400TFIIH subunit TTDA/Tfb5SMARTSM01395Tbf5_2coord: 4..67
e-value: 2.5E-16
score: 70.2
IPR009400TFIIH subunit TTDA/Tfb5PFAMPF06331Tfb5coord: 6..66
e-value: 7.8E-23
score: 80.2
IPR009400TFIIH subunit TTDA/Tfb5PANTHERPTHR28580FAMILY NOT NAMEDcoord: 8..68
IPR035935TFB5-like superfamilyGENE3D3.30.70.1220coord: 2..67
e-value: 9.2E-22
score: 78.4
IPR035935TFB5-like superfamilySUPERFAMILY142897TFB5-likecoord: 9..67
NoneNo IPR availablePANTHERPTHR28580:SF1GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5coord: 8..68

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1194contigH-canaliculatus_F_contig1194:14572..16824 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1194.1700.1mRNA_H-canaliculatus_F_contig1194.1700.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1194 13695..16873 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1194.1700.1 ID=prot_H-canaliculatus_F_contig1194.1700.1|Name=mRNA_H-canaliculatus_F_contig1194.1700.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=71bp
MSTGYRSSKGVLITCDVPTKQFIMSLDSRLACVVSDLDATHVFVKKDSVK
EIQRELEQLHEKNVYVRPRS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035935TFB5-like_sf
IPR009400TFIIH_TTDA/Tfb5