mRNA_H-canaliculatus_F_contig1015.172.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1015.172.1
Unique NamemRNA_H-canaliculatus_F_contig1015.172.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1015.172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1015contigH-canaliculatus_F_contig1015:27589..27951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928643.6057518-UTR-H-canaliculatus_F_contig1015:27588..276001622928643.6057518-UTR-H-canaliculatus_F_contig1015:27588..27600Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1015 27589..27600 +
1696845510.0020437-UTR-H-canaliculatus_F_contig1015:27588..276001696845510.0020437-UTR-H-canaliculatus_F_contig1015:27588..27600Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1015 27589..27600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928643.6226187-CDS-H-canaliculatus_F_contig1015:27600..279511622928643.6226187-CDS-H-canaliculatus_F_contig1015:27600..27951Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1015 27601..27951 +
1696845510.0109138-CDS-H-canaliculatus_F_contig1015:27600..279511696845510.0109138-CDS-H-canaliculatus_F_contig1015:27600..27951Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1015 27601..27951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1015.172.1prot_H-canaliculatus_F_contig1015.172.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1015 27601..27951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1015.172.1

>prot_H-canaliculatus_F_contig1015.172.1 ID=prot_H-canaliculatus_F_contig1015.172.1|Name=mRNA_H-canaliculatus_F_contig1015.172.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=117bp
MVGTRSKVPSVDGDPRQTASSGSGVEEPTAAVAAARTAAAVTDANNASRR
RSATSRSSLQPPDNISRSPQADGVSTRTRPPRASSAPRAPSTRTSLERLP
SPRANIPETPPRRSSRP
back to top

mRNA from alignment at H-canaliculatus_F_contig1015:27589..27951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1015.172.1 ID=mRNA_H-canaliculatus_F_contig1015.172.1|Name=mRNA_H-canaliculatus_F_contig1015.172.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=363bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1015:27589..27951+ (Hapterophycus canaliculatus Oshoro5f female)
GACGACGTCGAGATGGTGGGTACGAGGTCGAAAGTACCGTCCGTTGATGG
CGATCCCAGGCAAACTGCAAGCTCCGGATCAGGAGTAGAAGAGCCGACTG
CGGCGGTAGCGGCGGCAAGGACGGCGGCGGCGGTGACGGATGCAAACAAC
GCTTCCAGACGCCGATCGGCGACTTCGAGGAGTTCTCTCCAGCCGCCCGA
CAACATCAGCCGCAGCCCCCAAGCTGACGGCGTTTCCACCCGAACCAGAC
CGCCTAGAGCCTCGTCTGCACCGCGAGCGCCGTCGACACGCACTTCGCTG
GAGCGACTACCGTCTCCCCGAGCCAACATACCCGAGACGCCCCCCCGCCG
CAGTTCTCGTCCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1015:27589..27951+

>mRNA_H-canaliculatus_F_contig1015.172.1 ID=mRNA_H-canaliculatus_F_contig1015.172.1|Name=mRNA_H-canaliculatus_F_contig1015.172.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=702bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1015:27589..27951+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGGGTACGAGGTCGAAAGTACCGTCCGTTGATGGCGATCCCAGGCA
AACTGCAAGCTCCGGATCAGGAGTAGAAGAGCCGACTGCGGCGGTAGCGG
CGGCAAGGACGGCGGCGGCGGTGACGGATGCAAACAACGCTTCCAGACGC
CGATCGGCGACTTCGAGGAGTTCTCTCCAGCCGCCCGACAACATCAGCCG
CAGCCCCCAAGCTGACGGCGTTTCCACCCGAACCAGACCGCCTAGAGCCT
CGTCTGCACCGCGAGCGCCGTCGACACGCACTTCGCTGGAGCGACTACCG
TCTCCCCGAGCCAACATACCCGAGACGCCCCCCCGCCGCAGTTCTCGTCC
CATGGTGGGTACGAGGTCGAAAGTACCGTCCGTTGATGGCGATCCCAGGC
AAACTGCAAGCTCCGGATCAGGAGTAGAAGAGCCGACTGCGGCGGTAGCG
GCGGCAAGGACGGCGGCGGCGGTGACGGATGCAAACAACGCTTCCAGACG
CCGATCGGCGACTTCGAGGAGTTCTCTCCAGCCGCCCGACAACATCAGCC
GCAGCCCCCAAGCTGACGGCGTTTCCACCCGAACCAGACCGCCTAGAGCC
TCGTCTGCACCGCGAGCGCCGTCGACACGCACTTCGCTGGAGCGACTACC
GTCTCCCCGAGCCAACATACCCGAGACGCCCCCCCGCCGCAGTTCTCGTC
CC
back to top