mRNA_H-canaliculatus_F_contig11915.1678.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11915.1678.1
Unique NamemRNA_H-canaliculatus_F_contig11915.1678.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig11915.1678.1 vs. uniprot
Match: D7FVU6_ECTSI (Pyr_redox_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU6_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 9.140e-22
Identity = 50/58 (86.21%), Postives = 54/58 (93.10%), Query Frame = 1
Query:   49 VGVGNNTATVAEQTAVFQRANAELKAAQNILVIGGGPIGIEMAGEIKEEMPEKSVTLV 222
            VGVGNNT TVAEQTAVF++ANA LKAA++ILVIGGGPIGIEMAGEI EEMP KSVTLV
Sbjct:  229 VGVGNNTGTVAEQTAVFKQANATLKAAKSILVIGGGPIGIEMAGEIMEEMPGKSVTLV 286          
BLAST of mRNA_H-canaliculatus_F_contig11915.1678.1 vs. uniprot
Match: A0A6H5KYH0_9PHAE (Pyr_redox_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.170e-20
Identity = 48/58 (82.76%), Postives = 54/58 (93.10%), Query Frame = 1
Query:   49 VGVGNNTATVAEQTAVFQRANAELKAAQNILVIGGGPIGIEMAGEIKEEMPEKSVTLV 222
            VGVGNNT TVA QTAVF++A+A LKAA++ILVIGGGPIGIE+AGEIKEEMP KSVTLV
Sbjct:  108 VGVGNNTGTVAGQTAVFKQAHATLKAAKSILVIGGGPIGIEIAGEIKEEMPGKSVTLV 165          
BLAST of mRNA_H-canaliculatus_F_contig11915.1678.1 vs. uniprot
Match: A0A549T3L9_METSR (FAD-dependent oxidoreductase n=2 Tax=Methylosinus TaxID=425 RepID=A0A549T3L9_METSR)

HSP 1 Score: 63.5 bits (153), Expect = 4.590e-10
Identity = 32/74 (43.24%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 LTPLAPPHRLTNPLAPVGVGNNTATVAEQTAVFQRANAELKAAQNILVIGGGPIGIEMAGEIKEEMPEKSVTLV 222
            +T LA   R  NPL    + +++ ++ E+ A+++R N  +  A+ IL++GGGPIG+E+AGEI E  PEKS+TL+
Sbjct:  108 VTVLATGSRHANPL----MRSSSGSMEERRALYRRYNVRIMEAEQILIVGGGPIGVEIAGEISEAWPEKSITLI 177          
BLAST of mRNA_H-canaliculatus_F_contig11915.1678.1 vs. uniprot
Match: A0A7S0MNE4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MNE4_9CRYP)

HSP 1 Score: 62.4 bits (150), Expect = 1.150e-9
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 1
Query:   46 PVGVGNNTATVAEQTAVFQRANAELKAAQNILVIGGGPIGIEMAGEIKEEMPEKSVTLV 222
            PV  G   A +A ++A +Q A AE+KAAQ++L++GGGP+ +E+AGEI    P K+VTLV
Sbjct:  289 PVKAGAGEANMAGRSAAWQAAAAEVKAAQDLLIVGGGPVAVELAGEIASVYPGKNVTLV 347          
BLAST of mRNA_H-canaliculatus_F_contig11915.1678.1 vs. uniprot
Match: A0A220WA56_9SPHN (NADH dehydrogenase n=1 Tax=Sphingorhabdus sp. SMR4y TaxID=2584094 RepID=A0A220WA56_9SPHN)

HSP 1 Score: 62.0 bits (149), Expect = 1.550e-9
Identity = 29/61 (47.54%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   37 PLAPVGVGNNTATVAEQTAVFQRANAELKAAQNILVIGGGPIGIEMAGEIKEEMPEKSVTL 219
            P  P+G   ++ T+A++ A    A+ +L AAQN+L+IGGG +G+E+AGEI +  P+KSVTL
Sbjct:  106 PTFPIGKSQDSMTLADRNAEVASAHDKLGAAQNVLIIGGGIVGVELAGEIADHYPDKSVTL 166          
BLAST of mRNA_H-canaliculatus_F_contig11915.1678.1 vs. uniprot
Match: A0A1M5SEH6_9BRAD (NADH dehydrogenase, FAD-containing subunit n=2 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5SEH6_9BRAD)

HSP 1 Score: 59.7 bits (143), Expect = 1.050e-8
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 LTPLAPPHRLTNPLAPVGVGNNTATVAEQTAVFQRANAELKAAQNILVIGGGPIGIEMAGEIKEEMPEKSVTLV 222
            +T LA   R + P     + +++ ++ E+ A F R  A L +A+ IL++GGGP+G+EMAGEI E  P +SVT+V
Sbjct:   86 ITVLATGSRFSGPF----IRSSSGSIEERKASFYRLEASLASARRILIVGGGPVGVEMAGEIVETWPGRSVTIV 155          
BLAST of mRNA_H-canaliculatus_F_contig11915.1678.1 vs. uniprot
Match: A0A5N6Q0B8_9ASTR (Pyr_redox_2 domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6Q0B8_9ASTR)

HSP 1 Score: 59.3 bits (142), Expect = 1.450e-8
Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 1
Query:   79 AEQTAVFQRANAELKAAQNILVIGGGPIGIEMAGEIKEEMPEKSVTLV 222
            AE+   +Q  N ++KAAQ+IL++GGGP G+E+AGEI  + PEK +TLV
Sbjct:  115 AERLKQYQAENEKIKAAQSILIVGGGPTGVELAGEIAVDFPEKKITLV 162          
BLAST of mRNA_H-canaliculatus_F_contig11915.1678.1 vs. uniprot
Match: UPI001F5CA477 (apoptosis-inducing factor homolog B-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5CA477)

HSP 1 Score: 58.5 bits (140), Expect = 2.600e-8
Identity = 25/48 (52.08%), Postives = 39/48 (81.25%), Query Frame = 1
Query:   79 AEQTAVFQRANAELKAAQNILVIGGGPIGIEMAGEIKEEMPEKSVTLV 222
            AE+ A FQR + ++K+++++L+IGGGP G+E+AGEI  + PEK VT+V
Sbjct:   89 AERLAEFQRDSGKIKSSESVLIIGGGPTGVELAGEIAVDYPEKKVTIV 136          
BLAST of mRNA_H-canaliculatus_F_contig11915.1678.1 vs. uniprot
Match: A0A2U1MXF4_ARTAN (FAD/NAD(P)-binding oxidoreductase family protein n=4 Tax=Anthemideae TaxID=102810 RepID=A0A2U1MXF4_ARTAN)

HSP 1 Score: 58.5 bits (140), Expect = 2.710e-8
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   73 TVAEQTAVFQRANAELKAAQNILVIGGGPIGIEMAGEIKEEMPEKSVTLV 222
            T AE+   +Q  N ++KAAQ+IL++GGGP G+E+AGEI  + P+K +TLV
Sbjct:  115 TRAERLKQYQAENQKIKAAQSILIVGGGPTGVELAGEIAVDYPDKKITLV 164          
BLAST of mRNA_H-canaliculatus_F_contig11915.1678.1 vs. uniprot
Match: A0A165UQF6_9HYPH (Dihydrolipoyl dehydrogenase n=12 Tax=Pseudovibrio TaxID=258255 RepID=A0A165UQF6_9HYPH)

HSP 1 Score: 58.5 bits (140), Expect = 2.730e-8
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:   73 TVAEQTAVFQRANAELKAAQNILVIGGGPIGIEMAGEIKEEMPEKSVTLV 222
            + +E+ A F+  +  +++AQ IL++GGGP+GIEMAGEI E  P+KSV LV
Sbjct:  117 STSERHAAFKSTHGAIESAQKILLVGGGPVGIEMAGEITERFPQKSVVLV 166          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11915.1678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVU6_ECTSI9.140e-2286.21Pyr_redox_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KYH0_9PHAE1.170e-2082.76Pyr_redox_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A549T3L9_METSR4.590e-1043.24FAD-dependent oxidoreductase n=2 Tax=Methylosinus ... [more]
A0A7S0MNE4_9CRYP1.150e-950.85Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A220WA56_9SPHN1.550e-947.54NADH dehydrogenase n=1 Tax=Sphingorhabdus sp. SMR4... [more]
A0A1M5SEH6_9BRAD1.050e-841.89NADH dehydrogenase, FAD-containing subunit n=2 Tax... [more]
A0A5N6Q0B8_9ASTR1.450e-854.17Pyr_redox_2 domain-containing protein n=2 Tax=Mika... [more]
UPI001F5CA4772.600e-852.08apoptosis-inducing factor homolog B-like n=1 Tax=L... [more]
A0A2U1MXF4_ARTAN2.710e-852.00FAD/NAD(P)-binding oxidoreductase family protein n... [more]
A0A165UQF6_9HYPH2.730e-852.00Dihydrolipoyl dehydrogenase n=12 Tax=Pseudovibrio ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11915contigH-canaliculatus_F_contig11915:3415..3636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2.9e-18
Seed eggNOG ortholog2880.D7FVU6
EggNOG free text desc.Oxidoreductase
EggNOG OGsCOG1252@1,KOG2495@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928894.880582-CDS-H-canaliculatus_F_contig11915:3414..36361622928894.880582-CDS-H-canaliculatus_F_contig11915:3414..3636Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11915 3415..3636 -
1696845604.3772552-CDS-H-canaliculatus_F_contig11915:3414..36361696845604.3772552-CDS-H-canaliculatus_F_contig11915:3414..3636Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11915 3415..3636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11915.1678.1prot_H-canaliculatus_F_contig11915.1678.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11915 3415..3636 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11915.1678.1

>prot_H-canaliculatus_F_contig11915.1678.1 ID=prot_H-canaliculatus_F_contig11915.1678.1|Name=mRNA_H-canaliculatus_F_contig11915.1678.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=74bp
LTPLAPPHRLTNPLAPVGVGNNTATVAEQTAVFQRANAELKAAQNILVIG
GGPIGIEMAGEIKEEMPEKSVTLV
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mRNA from alignment at H-canaliculatus_F_contig11915:3415..3636-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11915.1678.1 ID=mRNA_H-canaliculatus_F_contig11915.1678.1|Name=mRNA_H-canaliculatus_F_contig11915.1678.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=222bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11915:3415..3636- (Hapterophycus canaliculatus Oshoro5f female)
CTGACCCCCCTCGCTCCCCCCCATCGTCTCACGAACCCTCTGGCCCCAGT CGGGGTGGGAAACAACACCGCGACAGTGGCGGAGCAGACAGCGGTCTTCC AGCGGGCTAACGCCGAGCTGAAGGCGGCCCAAAACATCCTCGTCATCGGG GGCGGGCCTATCGGCATCGAGATGGCTGGAGAGATCAAGGAGGAGATGCC GGAGAAGAGCGTGACTTTGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11915:3415..3636-

>mRNA_H-canaliculatus_F_contig11915.1678.1 ID=mRNA_H-canaliculatus_F_contig11915.1678.1|Name=mRNA_H-canaliculatus_F_contig11915.1678.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=444bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11915:3415..3636- (Hapterophycus canaliculatus Oshoro5f female)
CTGACCCCCCTCGCTCCCCCCCATCGTCTCACGAACCCTCTGGCCCCAGT
CGGGGTGGGAAACAACACCGCGACAGTGGCGGAGCAGACAGCGGTCTTCC
AGCGGGCTAACGCCGAGCTGAAGGCGGCCCAAAACATCCTCGTCATCGGG
GGCGGGCCTATCGGCATCGAGATGGCTGGAGAGATCAAGGAGGAGATGCC
GGAGAAGAGCGTGACTTTGGTGCTGACCCCCCTCGCTCCCCCCCATCGTC
TCACGAACCCTCTGGCCCCAGTCGGGGTGGGAAACAACACCGCGACAGTG
GCGGAGCAGACAGCGGTCTTCCAGCGGGCTAACGCCGAGCTGAAGGCGGC
CCAAAACATCCTCGTCATCGGGGGCGGGCCTATCGGCATCGAGATGGCTG
GAGAGATCAAGGAGGAGATGCCGGAGAAGAGCGTGACTTTGGTG
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