mRNA_H-canaliculatus_F_contig11913.1676.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig11913.1676.1 vs. uniprot
Match: A0A6H5LKE0_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKE0_9PHAE) HSP 1 Score: 612 bits (1578), Expect = 1.580e-189 Identity = 488/795 (61.38%), Postives = 541/795 (68.05%), Query Frame = 1
Query: 1 AGLPPSEGLARGMAMPRPASITIRIPSIPPFLAPEVWSRPAFLPPTPPPXXXXXXXXXRPADAPTSSKSGPAGGDGQAQKASSVGXXXXXXXXXXXXXXXXSAAADEMDVEEEDQGPGTAGGAXXXXXXXXXASRTAAGKKASASPADGGADGAXXXXXXXXXXXXXXXXXXXXXXXXXXXHRGVEEDK----REGDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARRLRVSMILNRLKEDAEERKRSGRYVPPQGGAAAA-------AQFEDAGWGAGDEG--NEEAVIAVPRLRDR-GVTRKAAGDAGGCGVGGXXXXXXXXSGPAED---GAHWPPLGQRRLKRRLECAKRHAAAAQKPGGAGVRLTTLLRLETQAAAPAAAPAAHGTGTGGWLDSKVARMRKAEGEEWAAWHRRVVEEENSNPAESAGPPLPFGFIPRLAHRALGAYALVRTFSRPLRLTPASSVSFLRALSLRLRTPLLDAIHCELLRRVSCLLRGRTGSWAKGSSAQRELDWQYLDHVTWPAYFVEFVRTMEEQRRREGAKAEAEAEAAGGAENDGAISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTLETLCSIFQTGEHHLLPLEMKVQALEYLVDRAMECPWFEKEIDHRVRSPPESFVVDADDGKVFDCVICGQVGNLLCCDNCPRAYHPKCVGGRQGINSTNWSCWECLIEDSAKDGVRVPRVRTPMGPVWVIGGYVFRAAP 2334
AG P A + + P + RIPS+P F APE W+RP FLPPTPP XXXXXX P P ++ GGD QAQ+A+ A AD MDV+EE + GT G + +S +D G XXXXXXXXXXXXXXXX H GVEE+K +E D XXXXXXXXXXXXXXXX + VS + RL+EDAEERKRSGR PQGG A A A +D W A ++ +E VIAVP LR G KA DAGG G G GPAE A +PPLGQRRL+RRL CA+RHAA AQ PGGAG+RL+TLL+ + A P+ A G+ WL +++ARMR+ EGEEWAAW RRV EEE SNP E+AGPPLPFGF+PRL HRALGAYAL+RTFSRP RLTPASSVSFLRALSLRLRTPLLDAIHCELLRRV CLLRGR+G+WAK S+AQ+ELDW+YLD VTWPAYFVEFVRTMEEQR+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+LETLC FQ GEHHLLPLEMKVQALEYLVDRAMECPWFEKEID+RVR+PPE+FVVDADDGKVFDCVICGQVGNLLCCDNCPRAYHP+CVGG+QGI+S NWSCWECLIEDSA+DGVRVPRV T MGPVWVIGGYVFR P
Sbjct: 1409 AGFSPPAATAARIGVSVPTAEVTRIPSMPAFPAPERWTRPVFLPPTPPXXXXXXXEMPAP---PVAAPPELDGGDVQAQEAARAASGDSSSGPGTAA----GAGADAMDVDEEARRDGTIGSGD---------------SRKQSSWSDTAEAGRSGGDXXXXXXXXXXXXXXXXSKYDGRDH-GVEEEKGGERKESDEATSGKAQGENELAEKEASSKAXXXXXXXXXXXXXXXXAAAAALVCFARVGTMPVSGVXKRLREDAEERKRSGRLAQPQGGGAEAGAXXXXVAALDDPAWAAEEDPFQEQEPVIAVPCLRGHEGNGAKARRDAGGSGEG-------AGGGPAEKDAGAAGYPPLGQRRLQRRLGCARRHAALAQHPGGAGLRLSTLLKADAPAEDPSRGGCAGGSS---WLGARLARMRRIEGEEWAAWQRRVGEEEASNPGEAAGPPLPFGFVPRLVHRALGAYALIRTFSRPFRLTPASSVSFLRALSLRLRTPLLDAIHCELLRRVLCLLRGRSGNWAKSSAAQQELDWKYLDQVTWPAYFVEFVRTMEEQRQX--------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDSLETLCLAFQAGEHHLLPLEMKVQALEYLVDRAMECPWFEKEIDNRVRTPPEAFVVDADDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGGKQGIDSVNWSCWECLIEDSARDGVRVPRVSTSMGPVWVIGGYVFRPTP 2156
BLAST of mRNA_H-canaliculatus_F_contig11913.1676.1 vs. uniprot
Match: D7FZH6_ECTSI (WD repeat domain-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH6_ECTSI) HSP 1 Score: 602 bits (1553), Expect = 3.490e-186 Identity = 392/544 (72.06%), Postives = 428/544 (78.68%), Query Frame = 1
Query: 736 LRVSMILNRLKEDAEERKRSGRYVPPQGGAAAAAQ-----FEDAGWGAGDEG--NEEAVIAVPRLRDR-GVTRKAAGDAGGCGVGGXXXXXXXXSGPAEDGAH---WPPLGQRRLKRRLECAKRHAAAAQKPGGAGVRLTTLLRLETQAAAPAAAPAAHGTGTGGWLDSKVARMRKAEGEEWAAWHRRVVEEENSNPAESAGPPLPFGFIPRLAHRALGAYALVRTFSRPLRLTPASSVSFLRALSLRLRTPLLDAIHCELLRRVSCLLRGRTGSWAKGSSAQRELDWQYLDHVTWPAYFVEFVRTMEEQRRREGAKAEAEAEAAGGAENDGAISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTLETLCSIFQTGEHHLLPLEMKVQALEYLVDRAMECPWFEKEIDHRVRSPPESFVVDADDGKVFDCVICGQVGNLLCCDNCPRAYHPKCVGGRQGINSTNWSCWECLIEDSAKDGVRVPRVRTPMGPVWVIGGYVFRAAP 2334
LRV ++L RL+EDAEERKRSGR P+GG +D W A ++ +E VIAVPRLR G KA DAG G G GPAE GA PPLGQRRL+RRL CA+RHAA AQ PGGAG+RL+TLL+ + A P+ A G+ WL +++ARMR+ EGEEWAAW RRV EEE SNP E+AGPPLPFGF+PRL HRALGAYAL+RTFSRP RLTPASSVSFLRALSLRLRTPLLDAIHCELLRRV CLLRGR G+WAK S+AQRELDW+YLD VTWPAYFVEFV+TMEEQR+RE A XXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX D+LETLC FQ GEHHLLPLEMKVQALEYLVDRAMECPWFEKEID+RVR+PPE+FVVDADDGKVFDCVICGQVGNLLCCDNCPRAYHP+CVGG+QGI+S NWSCWECLIEDSA+DGVRVPRV T MGPVWVIGGYVFR P
Sbjct: 1240 LRVFLVLKRLREDAEERKRSGRLAQPRGGXXXXXXXXXXALDDPAWAAEEDPFQEQEPVIAVPRLRGHEGKKAKARQDAGRSGEG-------AGGGPAEKGAGASGCPPLGQRRLQRRLGCARRHAALAQHPGGAGLRLSTLLKADAPAEDPSRGGCAGGSS---WLGARLARMRRVEGEEWAAWQRRVGEEEASNPGEAAGPPLPFGFVPRLVHRALGAYALIRTFSRPFRLTPASSVSFLRALSLRLRTPLLDAIHCELLRRVLCLLRGRAGNWAKSSAAQRELDWKYLDQVTWPAYFVEFVQTMEEQRQRED-----------------AXXXXXXXXXXXXXXGMMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMDSLETLCLAFQAGEHHLLPLEMKVQALEYLVDRAMECPWFEKEIDNRVRTPPEAFVVDADDGKVFDCVICGQVGNLLCCDNCPRAYHPRCVGGKQGIDSVNWSCWECLIEDSARDGVRVPRVSTSMGPVWVIGGYVFRPTP 1756
BLAST of mRNA_H-canaliculatus_F_contig11913.1676.1 vs. uniprot
Match: A0A1D2AC16_AUXPR (Uncharacterized protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AC16_AUXPR) HSP 1 Score: 82.4 bits (202), Expect = 2.940e-12 Identity = 89/352 (25.28%), Postives = 128/352 (36.36%), Query Frame = 1
Query: 1360 AYALVRTFSRPLRLTPASSVSFLRALSLRLRTPLLDAIHCELLRRVSCLLRGRTGSWAKGSSAQRELDWQYLDHVTWPAYFVEFVRTM---------EEQRRREGAKAEAEAEAAGGAENDGAISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTLETLCSIFQTGEHHLLPLEMKVQALEYLVDRAMECPWFEKEIDHR---------------VRSPPESFVVDADDGKVFDCVICGQVGNLLCCDNCPRAYHPKCVGGR-QGINSTNWSCWECLIEDSAKD-GVRVP--RVRTPMGPVWVIGGYVFRAA 2331
+Y +R FS LRL P ++ AL+ + L+D +H +LR L+ T + AQR LD Q+LD +TWP Y +++R + R G +A AE GA+ G C E+++LPL +KV+ LE L + ++C EID R V PP+ V A D CV+CG GNL+CCD CP YH +C+G + + W C EC+ + GVR+P P ++ G V RAA
Sbjct: 163 SYQTLRAFSWQLRLAPFPLAAYCAALAAEAASHLVDEVHVSMLR---ALMIDETAA----ERAQRALDPQFLDALTWPLYLWDWLRLSGSPLARGEWAHRLERTGRGGQATAEGTETKGGRGALGARAVFHGR-----------------------------------------------------------GPARPRHCP-----EYYVLPLRVKVKILESLANSLLDCITIRAEIDRREAAGQLVAGCEAGPAVAPPPQ--VAGALDHNTDTCVLCGLGGNLICCDGCPATYHMRCLGETSKSLGDGEWLCPECVAGGRGEAAGVRLPPGARNAWKQPYYLAQGSVIRAA 441
BLAST of mRNA_H-canaliculatus_F_contig11913.1676.1 vs. uniprot
Match: A0A2K3DS27_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DS27_CHLRE) HSP 1 Score: 77.8 bits (190), Expect = 8.420e-11 Identity = 39/87 (44.83%), Postives = 48/87 (55.17%), Query Frame = 1
Query: 2086 ADDGKVFDCVICGQVGNLLCCDNCPRAYHPKCVGGR-QGINSTNWSCWECLIEDSAKD-GVRVPRVRTPMG---PVWVIGGYVFRAA 2331
ADDG +CV+CGQ GNLLCCD CP AYH +C+G + + W C EC + + G+RVP PVWV G F AA
Sbjct: 776 ADDGNTENCVLCGQGGNLLCCDRCPAAYHMRCIGETTRSVPEGEWRCPECAVGGRGEAAGLRVPLAGLAPDCGWPVWVAYGAAFAAA 862
BLAST of mRNA_H-canaliculatus_F_contig11913.1676.1 vs. uniprot
Match: A0A8J6C1P9_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J6C1P9_ZIZPA) HSP 1 Score: 76.6 bits (187), Expect = 1.730e-10 Identity = 79/334 (23.65%), Postives = 113/334 (33.83%), Query Frame = 1
Query: 1363 YALVRTFSRPLRLTPASSVSFLRALSLRLRTPLLDAIHCELLRRVSCLLRGRTGS---WAKGSSAQRELDWQYLDHVTWPAYFVEFVRTMEEQRRREGAKAEAEAEAAGGAENDGAISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTLETLCSIFQTGEHHLLPLEMKVQALEYLVDRAMECPWFEKEIDHRVR-----------------------------SPPESFVVDADDGKVFDCVICGQVGNLLCCDNCPRAYHPKCVGGRQGI-NSTNWSCWECLIEDSAKDGVR 2265
Y+ +R+FSR L L+P + +F+ AL PL+D +H LL + L WA R L+W+ LD TWP Y E++ T + R G L L + T E+++ P +K++ L L D +E E+ R+ SPP D +DG +C +CG VGNLLCCD CP A+H KCVG + + +W C ECLI+ + DG R
Sbjct: 237 YSCLRSFSRQLFLSPFTLETFVAALRCTYVNPLIDWVHFALLGSMKSHLENLANEGDPWAV--HCIRNLNWELLDLATWPIYLAEYLLTRGSELR-----------------------------------------------------------------------------------------YGMKLTDL-KLLNT-EYYIQPTTVKLELLRSLCDDVLEIEVIHSELGSRMSELYGSDELCKSTGLRRKRKASAVKDLVNSSPPPDGSSDTEDGNSDECYLCGMVGNLLCCDGCPAAFHSKCVGVVEDLLPEGDWFCPECLIQKN--DGSR 475
BLAST of mRNA_H-canaliculatus_F_contig11913.1676.1 vs. uniprot
Match: A0A388LHD2_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LHD2_CHABU) HSP 1 Score: 72.4 bits (176), Expect = 3.880e-9 Identity = 76/319 (23.82%), Postives = 113/319 (35.42%), Query Frame = 1
Query: 1291 PAESAGPPLPFGFIPRLAHRALGAYALVRTFSRPLRLTPASSVSFLRALSLRLRTPLLDAIHCELLRRV-SCLLRGRTGSWAKGSSAQRELDWQYLDHVTWPAYFVEFVRTMEEQRRREGAKAEAEAEAAGGAENDGAISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDTLETLCSIFQTGEHHLLPLEMKVQALEYLVDRAMECPWFEKEIDHRVRSPPESFVVDADDGKVFDCVICGQVGNLLCCDNCPRAYHPKCVGG--RQGINSTNWSCWECLI 2238
P S P+P + L +G YA++RTFS L L+P + +F AL+ + L+D IH LL+ + L+ K R++ W LD VTWP Y + ++ + R G + + DTL+ + + P ++KV+ E A++ RV V+ DDG +CV+CG GNLLCCD CP A+H +CV G + I S W C EC+I
Sbjct: 1407 PQSSLDLPVPANCVSEL----MGVYAMLRTFSLRLFLSPFTFETFCGALTCKKVNSLVDGIHLALLKVLHQRFLQAAEDVRGKKWPCVRQMKWSLLDEVTWPEYLLFYLVARNFGKER-------------GLDLVRSGLLKSEYYVLPLEVKLAMLSFLCDDALETCDVRAEILVRESNELEGGKPMPICRRAEIDLIRPSTPVPKADTLQLTAE--KQKKRRGRPPKVKVEVSEISEPPAVQ----------RVEELDVVKAVEGDDGNADECVLCGMDGNLLCCDGCPAAFHTRCVVGMAKMTIPSGPWFCPECVI 1696
BLAST of mRNA_H-canaliculatus_F_contig11913.1676.1 vs. uniprot
Match: A0A7S2JU42_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JU42_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 7.330e-9 Identity = 39/117 (33.33%), Postives = 56/117 (47.86%), Query Frame = 1
Query: 1936 IFQTGEHHLLPLEMKVQALEYLVDRAMECPWFEKEIDHRVRSPPESFVVDADDGK--------VFDCVICGQVGNLLCCDNCPRAYHPKCVG-GRQGINSTNWSCWECLIEDSAKDG 2259
+ +T +H LP+E K+ LE+L+D ++ E +R S ES + + V DCV+CG +G L+CCD C A+H +C G W C EC D AK G
Sbjct: 119 LLRTMYYHKLPVEKKLNILEFLLDELLQSRPISTEFTNRDSSHEESGIFGTPPTETELTSIKNVDDCVVCGGLGELVCCDGCSNAFHRRCTSLPTYGDLPGKWLCAECTFPDPAKFG 235
BLAST of mRNA_H-canaliculatus_F_contig11913.1676.1 vs. uniprot
Match: A0A7S4RCH3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RCH3_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.620e-8 Identity = 47/122 (38.52%), Postives = 67/122 (54.92%), Query Frame = 1
Query: 1318 PFGFIPRLAHRALGAYALVRTFSRPLRLTPASSVSFLRALSLRLRTPLLDAIHCELLRRV-------SCLLRG-----RTGSWAKGSSAQREL---DWQYLDHVTWPAYFVEFVRTMEEQRR 1638
P F P + +RA+G Y+L+RT S LRL+P + +FL AL L++ PLL IH +LR + S LRG + + +R+L + YLD VTWP Y+ E+VR EE+ R
Sbjct: 518 PPNFPPSMIYRAIGCYSLLRTLSLRLRLSPFTPTTFLNALLLKVPNPLLGEIHVRVLRMLFAYRKIGSYHLRGSPKHHHPANPLEDGDRKRQLGCDNLHYLDLVTWPVYYEEYVRATEEKWR 639
BLAST of mRNA_H-canaliculatus_F_contig11913.1676.1 vs. uniprot
Match: A0A448ZPZ6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZPZ6_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 2.850e-7 Identity = 36/113 (31.86%), Postives = 53/113 (46.90%), Query Frame = 1
Query: 1954 HHLLPLEMKVQALEYLVDR-----AMECPWFEKEIDHRVRSPPESFVVDADDGKVFD----CVICGQVGNLLCCDNCPRAYHPKCVG--GRQGINSTNWSCWECLIEDSAKDG 2259
+H LP E K+ LE+L+D A+ + ++ I P + D ++ K D C +CGQ G+LLCCD C +YH C+ Q + W C EC + D G
Sbjct: 926 YHRLPXEDKINMLEFLIDELLTVDAISAEFQKRRIRTEYHETPYGSLPDEEEYKNLDNNDECAVCGQEGDLLCCDGCVSSYHRGCLNMNAGQSLPEGKWLCPECSLVDPCTFG 1038
BLAST of mRNA_H-canaliculatus_F_contig11913.1676.1 vs. uniprot
Match: A0A7S4NEB5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NEB5_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 6.810e-7 Identity = 55/153 (35.95%), Postives = 77/153 (50.33%), Query Frame = 1
Query: 1276 EENSNPAESAGPPLPFGFIPRLAHRALGAYALVRTFSRPLRLTPASSVSFLRALSLRLRT---PLLDAIHCELLR-------RVSCLLRGRTGSWAKGSSAQRELDW--------------------QYLDHVTWPAYFVEFVRTMEEQRRRE 1644
E+ P G LP GF P LA RALG+YA++RT S LRL+P + +FLRALSL L + LL A+H LLR R + +LRG S++RE W Y+D+ TW Y+ ++V T++ ++ RE
Sbjct: 527 EDLKGPDHLVGSHLPAGFPPELALRALGSYAILRTLSAHLRLSPFTPTAFLRALSLPLGSGANKLLGAVHVSLLRALYAHAGRGTYVLRGE----GLCRSSKREDHWGVSRVVKYHPDKYLRANENLTYMDNWTWTLYYDDYV-TVQAKKWRE 674 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11913.1676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig11913.1676.1 >prot_H-canaliculatus_F_contig11913.1676.1 ID=prot_H-canaliculatus_F_contig11913.1676.1|Name=mRNA_H-canaliculatus_F_contig11913.1676.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=817bp AGLPPSEGLARGMAMPRPASITIRIPSIPPFLAPEVWSRPAFLPPTPPPPback to top mRNA from alignment at H-canaliculatus_F_contig11913:391..3857- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig11913.1676.1 ID=mRNA_H-canaliculatus_F_contig11913.1676.1|Name=mRNA_H-canaliculatus_F_contig11913.1676.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3467bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11913:391..3857- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11913:391..3857- >mRNA_H-canaliculatus_F_contig11913.1676.1 ID=mRNA_H-canaliculatus_F_contig11913.1676.1|Name=mRNA_H-canaliculatus_F_contig11913.1676.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4902bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11913:391..3857- (Hapterophycus canaliculatus Oshoro5f female)back to top |