mRNA_H-canaliculatus_F_contig10147.165.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10147.165.1
Unique NamemRNA_H-canaliculatus_F_contig10147.165.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10147.165.1 vs. uniprot
Match: A0A6H5K975_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K975_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.280e-15
Identity = 50/138 (36.23%), Postives = 78/138 (56.52%), Query Frame = 1 
Query:    1 SGVLPLLFAPVFTDVNSMEHYVRFSEIDAVADRTESAYNTISEKREVCHAFRNLIQSCSASTYMVGAPSYTASELGALEKTEREQVAK-------------------------GAVGNANAGESKHREVKQSAPSASG 339
            S ++P L AP+F+  +++  YVR   +  VADR      T + K  VC+AF++L+++CS S ++V +PS+TA  L  L+K+++EQV +                         G V N N GE+K++E+K SAPSASG
Sbjct:  121 SSIVPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVEPGTPAGKAAVCNAFQDLVKACSWSCFVVRSPSFTAEGLHVLQKSQQEQVKQATRVIGVALGTIHKGLHITRNVVVNGVVTNCNVGEAKNKELKASAPSASG 258
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BLAST of mRNA_H-canaliculatus_F_contig10147.165.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 8.250e-15
Identity = 51/138 (36.96%), Postives = 76/138 (55.07%), Query Frame = 1 
Query:    1 SGVLPLLFAPVFTDVNSMEHYVRFSEIDAVADRTESAYNTISEKREVCHAFRNLIQSCSASTYMVGAPSYTASELGALEKTEREQVAK-------------------------GAVGNANAGESKHREVKQSAPSASG 339
            S   P L AP+F+  +++  YVR   +  VADR      T + K  VC+AF++L+++CS S ++V +PS+TA  L AL+K++ EQV +                         G V N N GE+K++E+K SAPSASG
Sbjct:  200 SSSFPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVDPGTPAGKAAVCNAFQDLVKACSWSCFVVRSPSFTAEGLRALQKSQLEQVKQATRVMGVALGTIHKGLHIARNVVVNGVVTNCNVGEAKNKELKASAPSASG 337
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BLAST of mRNA_H-canaliculatus_F_contig10147.165.1 vs. uniprot
Match: A0A6H5JWC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.740e-13
Identity = 48/137 (35.04%), Postives = 74/137 (54.01%), Query Frame = 1 
Query:    4 GVLPLLFAPVFTDVNSMEHYVRFSEIDAVADRTESAYNTISEKREVCHAFRNLIQSCSASTYMVGAPSYTASELGALEKTEREQVAK-------------------------GAVGNANAGESKHREVKQSAPSASG 339
             + P L AP+F+  +++  YVR      VADR      T + K  VC+AF++L+++CS S ++V +PS+TA  L  L+ +++EQV +                         G V N N GE+K++E+K SAPSASG
Sbjct:   51 SIFPFLLAPIFSSPDNLGRYVRAMVAMEVADRISVEPVTPAGKAAVCNAFQDLVKACSWSCFVVRSPSFTAEGLHVLQNSQQEQVKQATRVIRVALGTIHKGLDIARNLVVNGVVTNCNVGEAKNKELKASAPSASG 187
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BLAST of mRNA_H-canaliculatus_F_contig10147.165.1 vs. uniprot
Match: A0A6H5KR91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR91_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 9.280e-10
Identity = 44/136 (32.35%), Postives = 70/136 (51.47%), Query Frame = 1 
Query:    7 VLPLLFAPVFTDVNSMEHYVRFSEIDAVADRTESAYNTISEKREVCHAFRNLIQSCSASTYMVGAPSYTASELGALEKTEREQVAK-------------------------GAVGNANAGESKHREVKQSAPSASG 339
            + P L AP+F+  +++  YVR   +  VADR     +T + K  VC+ F+ L+++CS S + V + S TA     L+++++EQV +                         G V N N  E+K++E+K SAPSASG
Sbjct:   54 IFPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVEPDTPAGKEAVCNTFQYLVKACSWSCFEVRSQSLTAEGFHVLQQSQQEQVKQATRVIGVALGTIHKGLHIARNVVVNGDVTNCNVEEAKNKELKASAPSASG 189
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10147.165.1 vs. uniprot
Match: A0A6H5JTN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN6_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 5.660e-5
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  139 VCHAFRNLIQSCSASTYMVGAPSYTASELGALEKTEREQV 258
            VC AFR+L+++CSAST+MV   SYT +EL  LEK +REQV
Sbjct:  349 VCRAFRDLMEACSASTFMVRLGSYTDAELRVLEKWQREQV 388
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10147.165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K975_9PHAE1.280e-1536.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWW9_ECTSI8.250e-1536.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWC7_9PHAE4.740e-1335.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR91_9PHAE9.280e-1032.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTN6_9PHAE5.660e-562.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10147contigH-canaliculatus_F_contig10147:344..2271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size343
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10147.165.1prot_H-canaliculatus_F_contig10147.165.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10147 344..2269 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928643.3648403-CDS-H-canaliculatus_F_contig10147:343..3971622928643.3648403-CDS-H-canaliculatus_F_contig10147:343..397Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10147 344..397 +
1696845509.8575156-CDS-H-canaliculatus_F_contig10147:343..3971696845509.8575156-CDS-H-canaliculatus_F_contig10147:343..397Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10147 344..397 +
1622928643.379191-CDS-H-canaliculatus_F_contig10147:814..10151622928643.379191-CDS-H-canaliculatus_F_contig10147:814..1015Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10147 815..1015 +
1696845509.8672678-CDS-H-canaliculatus_F_contig10147:814..10151696845509.8672678-CDS-H-canaliculatus_F_contig10147:814..1015Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10147 815..1015 +
1622928643.389387-CDS-H-canaliculatus_F_contig10147:2185..22691622928643.389387-CDS-H-canaliculatus_F_contig10147:2185..2269Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10147 2186..2269 +
1696845509.8789747-CDS-H-canaliculatus_F_contig10147:2185..22691696845509.8789747-CDS-H-canaliculatus_F_contig10147:2185..2269Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10147 2186..2269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10147.165.1

>prot_H-canaliculatus_F_contig10147.165.1 ID=prot_H-canaliculatus_F_contig10147.165.1|Name=mRNA_H-canaliculatus_F_contig10147.165.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=113bp
SGVLPLLFAPVFTDVNSMEHYVRFSEIDAVADRTESAYNTISEKREVCHA
FRNLIQSCSASTYMVGAPSYTASELGALEKTEREQVAKGAVGNANAGESK
HREVKQSAPSASG
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mRNA from alignment at H-canaliculatus_F_contig10147:344..2271+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10147.165.1 ID=mRNA_H-canaliculatus_F_contig10147.165.1|Name=mRNA_H-canaliculatus_F_contig10147.165.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1928bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10147:344..2271+ (Hapterophycus canaliculatus Oshoro5f female)
TCAGGCGTGCTCCCGCTGCTGTTCGCTCCAGTCTTCACGGACGTCAATTC
AATGGTAACTGTCTGCTTTCGCACAACTGGTGCCGGCAAGCACTATTTGG
ATTTTGCTAACCGCCCGTGACTGCATCATGCGAGGATGGCTGGGGATGAA
GACACCAAACAAATTGGCCGGCAATCGCGGGCCATGTGCAAGGTTTTCCG
TTCCAAAGTATTTTTCAGAGTTATGTCCTCAGGGGCGTGGAGGGGGGGGG
AGATCATGCTCATCCTCTTGTCTCTGATCTGGTTGCCAATCCGCGTTTTG
TGCCTACCGATTTCAGGCTCAACATGAGTTCTTCGCCTCCGCAGATGTTA
TAATCCCACACGCCATCCAGCACCCAGTTACTGAAATAATATCCACACCA
TCGCCTTCTCCTGTGGAGCCGAACGTGGTTTTTCAACAGACTCTTTGTCG
TACACCGTACCTTTTCCTCAGGAACATTACGTCCGATTCTCGGAGATTGA
TGCTGTCGCAGATAGGACGGAGTCGGCGTATAACACCATCTCGGAGAAGA
GGGAGGTGTGCCATGCATTCCGGAACCTCATCCAATCATGCAGTGCCAGC
ACCTACATGGTAGGGGCTCCCTCGTACACTGCATCAGAGCTAGGCGCGCT
TGAGAAGACCGAGAGAGAACAGGTGGGGCGATTCTCGTGGTTATTTTCTG
ATTTTTATCGAGGACGTGCTGCGGCGACATTTGAATGGTTTTGGGAGAAA
TCGAGTGATGATGGGGGGGGGGGCAAGGTGTGTCAGAGCGGAATAAACGC
TCTTGTCTTTACCCCAGTAAACCTTACTCTAAGGCCAGCTCACCGCGCTG
AACACATTGTGTCAACGCTGTCTCTGAGCGTGGTCCAACCCGGACATTCT
GATCTGTTTCGGGCATGAGGGTGGAGCGTTACGTACCACCTTCCCCAGAC
AGCTTTCCCTTCCAAACTCCGGTCAAAACCGCCTGATAGTGGAGAAGGGA
CAGAGAACCTCGAATCGTCATCTTGTGGGTCTCTAGTGACCAGGTCTCGC
ACAACTGGAGGCTCAGTAGCCGTTCACACCCCCAACGTCACCTGCGGCGG
CTTCGCCCCCCTACGTTTTTTACTGGCTCCGTTTTTTGCCTCAACTTCCT
ACACCACGATTCACATCTTTCACATCGTCGACCACTGTACTACATATTGG
GAGGAACCCTACGCTTGGACTCTCAGTCCGTTTTCAATGTGCAGGGGCGT
CGTTCGGAGAATGCGGCTCAAAAGTAGGTTGGCGATTCAGATGGACGCCT
TTGCTTTTCTCCAGCGGTCGGTGTGCCCCATTTTCTGCGCGCTTCGTCAC
CCGCATGCAGGTCAAGCAGACCTCTCTCGTAATGGGACAAGAGCTGGGCT
CTTTCCACAAAGGGCTGCATGCTGCCGACGATGTCCGAAACCTATGCGAG
CCCCTCTGCGGTACTCGCACGCCATCTGGAAAGTAGCTCGCTCACAACCG
AGATGCTGCTAGGGGTGCTGGTTTCCGCCATGTTTCCGGCGATCACGTCA
TCGACCATCGGTAGAGCGCGAGCTGTCCCGCCTTGCGAACCTGCTACGAG
GGTCACCGGTGCTGCTGTGAGGCGCGCTTTTCGCGCTTGGCTGATCGGCG
ATACCCGCTTATCAACCTGGCAACACGCCACTGCACCAGACGACAGCAAT
CCGACAAGCTTCCTGCTTCTAAAATGCGATACAGACCATGCCGTTCGTCC
TGAAGTACAGCCTTTTTCACACCGTGCGAGGGTTGATTCTCCATACACTT
AGTTCACAGTCTAGTCCTCCCTCTGCCATCGTGTTGTTGTAGGTCGCGAA
AGGTGCGGTCGGCAACGCGAATGCCGGGGAATCCAAGCACAGGGAGGTAA
AACAATCTGCGCCATCTGCCAGCGGTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10147:344..2271+

>mRNA_H-canaliculatus_F_contig10147.165.1 ID=mRNA_H-canaliculatus_F_contig10147.165.1|Name=mRNA_H-canaliculatus_F_contig10147.165.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=678bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10147:344..2271+ (Hapterophycus canaliculatus Oshoro5f female)
TCAGGCGTGCTCCCGCTGCTGTTCGCTCCAGTCTTCACGGACGTCAATTC
AATGTCAGGCGTGCTCCCGCTGCTGTTCGCTCCAGTCTTCACGGACGTCA
ATTCAATGGAACATTACGTCCGATTCTCGGAGATTGATGCTGTCGCAGAT
AGGACGGAGTCGGCGTATAACACCATCTCGGAGAAGAGGGAGGTGTGCCA
TGCATTCCGGAACCTCATCCAATCATGCAGTGCCAGCACCTACATGGTAG
GGGCTCCCTCGTACACTGCATCAGAGCTAGGCGCGCTTGAGAAGACCGAG
AGAGAACAGGAACATTACGTCCGATTCTCGGAGATTGATGCTGTCGCAGA
TAGGACGGAGTCGGCGTATAACACCATCTCGGAGAAGAGGGAGGTGTGCC
ATGCATTCCGGAACCTCATCCAATCATGCAGTGCCAGCACCTACATGGTA
GGGGCTCCCTCGTACACTGCATCAGAGCTAGGCGCGCTTGAGAAGACCGA
GAGAGAACAGGTCGCGAAAGGTGCGGTCGGCAACGCGAATGCCGGGGAAT
CCAAGCACAGGGAGGTAAAACAATCTGCGCCATCTGCCAGCGGTGTCGCG
AAAGGTGCGGTCGGCAACGCGAATGCCGGGGAATCCAAGCACAGGGAGGT
AAAACAATCTGCGCCATCTGCCAGCGGT
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