mRNA_H-canaliculatus_F_contig1013.155.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1013.155.1
Unique NamemRNA_H-canaliculatus_F_contig1013.155.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig1013.155.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 5.760e-27
Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = 1
Query:   94 KGLLGWPDVASHDIKATQWTRLKGTTRAVIDFMAEHGLCATTSQLQHREDSYAKHTKDEDILDKIVTAAAFPFDNCDMEPTVNVLPGEGPHISTTACTSVAVRGGVGPLED 426
            K +L    + SHDIK  QW + KGT R VI+F+AE+GL ATTSQ+QHRED +A+  +D+D+L +    AA P DNCD +P V V  GEGPH+   A T++ V   VG ++D
Sbjct:  688 KAILRGRHMGSHDIKGAQWAKSKGTCRDVINFVAEYGLWATTSQIQHREDFHARFVEDKDLLSRDAECAAIPLDNCDFDPRVGVGQGEGPHLPFIAATALTVGPDVGRMDD 798          
BLAST of mRNA_H-canaliculatus_F_contig1013.155.1 vs. uniprot
Match: A0A6H5KSG4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG4_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.120e-26
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 1
Query:  118 VASHDIKATQWTRLKGTTRAVIDFMAEHGLCATTSQLQHREDSYAKHTKDEDILDKIVTAAAFPFDNCDMEPTVNVLPGEGPHISTTACTSVAVRGGVGPLED 426
            + SHDIK  QW + KGT R V +F+AEHGL ATTSQ+QHRED +A+  +D+D+L +    AA P DNCD +P V V  GEGPH+   A T++ V   VG ++D
Sbjct:  434 MGSHDIKGAQWAKSKGTCREVTNFVAEHGLWATTSQIQHREDYHARFVEDKDLLSQDAECAAIPLDNCDFDPRVGVGQGEGPHLPFIAATALTVGPDVGRMDD 536          
BLAST of mRNA_H-canaliculatus_F_contig1013.155.1 vs. uniprot
Match: A0A6H5L193_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L193_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.330e-26
Identity = 60/119 (50.42%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   94 KGLLGWPDVASHDIKATQWTRLKGTTRAVIDFMAEHGLCATTSQLQHREDSYAKHTKDEDILDKIVTAAAFPFDNCDMEPTVNVLPGEGPHISTTACTSVAVRGGVGPLEDASRLRKRR 450
            K +     + + DIK  QW + KGT R VIDF+A HGL ATTSQ+QHRED +AK  +D+DIL K    AA   DNCD +P V    G+GPHIS  A T+V V   V  ++DA+ LR+RR
Sbjct:  537 KAIFPGRHLTAADIKGAQWAKSKGTCRQVIDFVAGHGLWATTSQVQHREDYHAKVVEDKDILPKGAQCAAIANDNCDNDPRVGERQGKGPHISFIAATAVTVGDDVVRMQDAASLRRRR 655          
BLAST of mRNA_H-canaliculatus_F_contig1013.155.1 vs. uniprot
Match: A0A6H5L577_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L577_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 8.970e-26
Identity = 59/107 (55.14%), Postives = 71/107 (66.36%), Query Frame = 1
Query:  130 DIKATQWTRLKGTTRAVIDFMAEHGLCATTSQLQHREDSYAKHTKDEDILDKIVTAAAFPFDNCDMEPTVNVLPGEGPHISTTACTSVAVRGGVGPLEDASRLRKRR 450
            DIK  QW + KGT R VIDF+A HGL ATTSQ+QHRED +AK  +D+DIL K    A    DN D +P V    GEGPHIS  A T+V V   VG ++DA+ LR+RR
Sbjct:   94 DIKGAQWAKSKGTCRQVIDFVAGHGLWATTSQVQHREDYHAKVVEDKDILPKGAQCAEIASDNSDHDPRVGERQGEGPHISFIAATAVTVGDDVGRMQDAASLRRRR 200          
BLAST of mRNA_H-canaliculatus_F_contig1013.155.1 vs. uniprot
Match: A0A6H5JHN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHN2_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.310e-25
Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  118 VASHDIKATQWTRLKGTTRAVIDFMAEHGLCATTSQLQHREDSYAKHTKDEDILDKIVTAAAFPFDNCDMEPTVNVLPGEGPHISTTACTSVAVRGGVGPLEDASRLRKR 447
            +ASHDIK  Q  + KGT R VI+F+AEHGL ATTS++QHRED +A+   D+D+  +    AA P DNCD +P V V  GEGPH+   A T++ V   VG ++D S ++ R
Sbjct:    1 MASHDIKGAQRAKSKGTCREVINFVAEHGLWATTSKIQHREDFHARFVDDKDLQSQDAECAAIPLDNCDFDPRVVVGQGEGPHLPFIAATALTVGPDVGGMDDCSLVKSR 110          
BLAST of mRNA_H-canaliculatus_F_contig1013.155.1 vs. uniprot
Match: A0A6H5L8Z0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Z0_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 5.560e-25
Identity = 53/107 (49.53%), Postives = 70/107 (65.42%), Query Frame = 1
Query:   94 KGLLGWPDVASHDIKATQWTRLKGTTRAVIDFMAEHGLCATTSQLQHREDSYAKHTKDEDILDKIVTAAAFPFDNCDMEPTVNVLPGEGPHISTTACTSVAVRGGVG 414
            K +L    + SHDIK  QW + KGT R VI+F+AE+GL ATTSQ+QHRED +A+  +D+D+L +    AA P DNCD +P V V  GEGPH+   A  ++ V   VG
Sbjct:  688 KAILRGRHMGSHDIKGAQWAKSKGTCRDVINFVAEYGLWATTSQIQHREDFHARFVEDKDLLSRDAECAAIPLDNCDFDPRVGVGQGEGPHLPFIAAMALTVGPDVG 794          
BLAST of mRNA_H-canaliculatus_F_contig1013.155.1 vs. uniprot
Match: A0A6H5JUI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI8_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 6.830e-25
Identity = 59/119 (49.58%), Postives = 74/119 (62.18%), Query Frame = 1
Query:   94 KGLLGWPDVASHDIKATQWTRLKGTTRAVIDFMAEHGLCATTSQLQHREDSYAKHTKDEDILDKIVTAAAFPFDNCDMEPTVNVLPGEGPHISTTACTSVAVRGGVGPLEDASRLRKRR 450
            K +     + + DIK  QW + KGT R VIDF+A HGL ATTSQ+QHRED  AK  +D+D L K    AA   DNCD +P V     EGPHIS  A T+V V   VG +++A+ LR+RR
Sbjct:  259 KAIFPGRHLTAADIKGAQWAKSKGTCRQVIDFVAGHGLWATTSQVQHREDYRAKVVEDKDTLPKGDQCAAIANDNCDHDPRVGERQWEGPHISFIAATAVTVGDDVGRMQNAASLRRRR 377          
BLAST of mRNA_H-canaliculatus_F_contig1013.155.1 vs. uniprot
Match: A0A6H5JM20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM20_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 1.920e-24
Identity = 60/129 (46.51%), Postives = 76/129 (58.91%), Query Frame = 1
Query:   94 KGLLGWPDVASHDIKATQWTRLKGTTRAVIDFMAEHGLCATTSQLQHREDSYAKHTKDEDILDKIVTAAAFPFDNCDMEPTVNVLP----------GEGPHISTTACTSVAVRGGVGPLEDASRLRKRR 450
            K +     + + DIK  QW + KGT R VIDF+A HGL ATTS +QHRED +AK  +D+DIL K    AA   DNCD +P V              GEGPHIS  + T+V V   VG ++DA+ LR+RR
Sbjct:  537 KAIFPGRHLTAADIKGAQWAKSKGTCRQVIDFVAGHGLWATTSPVQHREDYHAKVVEDKDILPKGAQCAAIANDNCDHDPRVGAXXXXXXXXXERQGEGPHISFISATAVTVGDNVGRIQDAASLRRRR 665          
BLAST of mRNA_H-canaliculatus_F_contig1013.155.1 vs. uniprot
Match: A0A6H5JL54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL54_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.020e-23
Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 1
Query:   94 KGLLGWPDVASHDIKATQWTRLKGTTRAVIDFMAEHGLCATTSQLQHREDSYAKHTKDEDILDKIVTAAAFPFDNCDMEPTVNVLPGEGPHISTTACTSVAVRGGVGPLEDASRLRKR 447
            K +L    + SHDIK  QW + K T R VI+F+AEHGL ATTSQ QHRED +A+  +D+D+L +    AA P +N D +P V V   EGPH+   A T++ V   VG ++D   +R R
Sbjct:  462 KAILRGRHMGSHDIKGAQWGKSKSTCRDVINFVAEHGLWATTSQTQHREDFHARFVEDKDLLSQDAECAAIPLNNYDFDPRVRVGQREGPHLPFIAATALTVGPDVGRMDDWWLVRSR 579          
BLAST of mRNA_H-canaliculatus_F_contig1013.155.1 vs. uniprot
Match: A0A6H5KHQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHQ7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 7.800e-20
Identity = 45/88 (51.14%), Postives = 60/88 (68.18%), Query Frame = 1
Query:  163 GTTRAVIDFMAEHGLCATTSQLQHREDSYAKHTKDEDILDKIVTAAAFPFDNCDMEPTVNVLPGEGPHISTTACTSVAVRGGVGPLED 426
            GT R VI+F+AEHGL ATTSQ+QHRED + +  +D+D+L     +AA P DNCD +P V V  GEGPH+   A T++ V   VG ++D
Sbjct:    2 GTCRDVINFVAEHGLWATTSQIQHREDYHPRFVEDKDLLSPDAESAAIPLDNCDFDPRVEVGQGEGPHLPFIAATALTVGPDVGRMDD 89          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1013.155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5L6D9_9PHAE5.760e-2749.55Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG4_9PHAE2.120e-2651.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L193_9PHAE3.330e-2650.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L577_9PHAE8.970e-2655.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHN2_9PHAE2.310e-2549.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8Z0_9PHAE5.560e-2549.53Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUI8_9PHAE6.830e-2549.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM20_9PHAE1.920e-2446.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL54_9PHAE4.020e-2345.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHQ7_9PHAE7.800e-2051.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1013contigH-canaliculatus_F_contig1013:26276..26728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size455
Cds size453
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928642.3183253-CDS-H-canaliculatus_F_contig1013:26275..267281622928642.3183253-CDS-H-canaliculatus_F_contig1013:26275..26728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1013 26276..26728 +
1696845509.3225343-CDS-H-canaliculatus_F_contig1013:26275..267281696845509.3225343-CDS-H-canaliculatus_F_contig1013:26275..26728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1013 26276..26728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1013.155.1prot_H-canaliculatus_F_contig1013.155.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1013 26276..26728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1013.155.1

>prot_H-canaliculatus_F_contig1013.155.1 ID=prot_H-canaliculatus_F_contig1013.155.1|Name=mRNA_H-canaliculatus_F_contig1013.155.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=151bp
PILRGRCKHFPFQSTAAFSPQAGRDAVHECRKGLLGWPDVASHDIKATQW
TRLKGTTRAVIDFMAEHGLCATTSQLQHREDSYAKHTKDEDILDKIVTAA
AFPFDNCDMEPTVNVLPGEGPHISTTACTSVAVRGGVGPLEDASRLRKRR
H
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mRNA from alignment at H-canaliculatus_F_contig1013:26276..26728+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1013.155.1 ID=mRNA_H-canaliculatus_F_contig1013.155.1|Name=mRNA_H-canaliculatus_F_contig1013.155.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=453bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1013:26276..26728+ (Hapterophycus canaliculatus Oshoro5f female)
CCCATCCTCCGAGGCCGCTGCAAACATTTTCCATTCCAATCGACTGCGGC GTTCTCACCACAGGCGGGTCGCGATGCTGTCCACGAGTGTCGCAAAGGCC TCCTTGGATGGCCAGATGTGGCATCGCACGACATCAAAGCAACGCAATGG ACGAGGTTGAAGGGGACGACACGGGCGGTGATCGACTTCATGGCCGAGCA CGGGTTGTGTGCCACAACTTCTCAACTCCAACACCGGGAGGACTCCTATG CTAAGCATACGAAGGACGAGGACATCCTCGACAAAATTGTGACGGCCGCT GCTTTCCCTTTCGACAACTGCGACATGGAACCAACCGTCAACGTCTTGCC CGGTGAGGGCCCTCACATCTCCACCACAGCCTGCACATCGGTGGCAGTGC GAGGCGGGGTGGGTCCGCTCGAAGACGCCAGTAGGTTGAGGAAACGCAGA CAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1013:26276..26728+

>mRNA_H-canaliculatus_F_contig1013.155.1 ID=mRNA_H-canaliculatus_F_contig1013.155.1|Name=mRNA_H-canaliculatus_F_contig1013.155.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=906bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1013:26276..26728+ (Hapterophycus canaliculatus Oshoro5f female)
CCCATCCTCCGAGGCCGCTGCAAACATTTTCCATTCCAATCGACTGCGGC
GTTCTCACCACAGGCGGGTCGCGATGCTGTCCACGAGTGTCGCAAAGGCC
TCCTTGGATGGCCAGATGTGGCATCGCACGACATCAAAGCAACGCAATGG
ACGAGGTTGAAGGGGACGACACGGGCGGTGATCGACTTCATGGCCGAGCA
CGGGTTGTGTGCCACAACTTCTCAACTCCAACACCGGGAGGACTCCTATG
CTAAGCATACGAAGGACGAGGACATCCTCGACAAAATTGTGACGGCCGCT
GCTTTCCCTTTCGACAACTGCGACATGGAACCAACCGTCAACGTCTTGCC
CGGTGAGGGCCCTCACATCTCCACCACAGCCTGCACATCGGTGGCAGTGC
GAGGCGGGGTGGGTCCGCTCGAAGACGCCAGTAGGTTGAGGAAACGCAGA
CACCCCATCCTCCGAGGCCGCTGCAAACATTTTCCATTCCAATCGACTGC
GGCGTTCTCACCACAGGCGGGTCGCGATGCTGTCCACGAGTGTCGCAAAG
GCCTCCTTGGATGGCCAGATGTGGCATCGCACGACATCAAAGCAACGCAA
TGGACGAGGTTGAAGGGGACGACACGGGCGGTGATCGACTTCATGGCCGA
GCACGGGTTGTGTGCCACAACTTCTCAACTCCAACACCGGGAGGACTCCT
ATGCTAAGCATACGAAGGACGAGGACATCCTCGACAAAATTGTGACGGCC
GCTGCTTTCCCTTTCGACAACTGCGACATGGAACCAACCGTCAACGTCTT
GCCCGGTGAGGGCCCTCACATCTCCACCACAGCCTGCACATCGGTGGCAG
TGCGAGGCGGGGTGGGTCCGCTCGAAGACGCCAGTAGGTTGAGGAAACGC
AGACAC
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