mRNA_H-canaliculatus_F_contig11719.1529.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11719.1529.1
Unique NamemRNA_H-canaliculatus_F_contig11719.1529.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11719.1529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11719contigH-canaliculatus_F_contig11719:624..1850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1227
Cds size675
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11719.1529.1prot_H-canaliculatus_F_contig11719.1529.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11719 750..1424 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928867.652899-UTR-H-canaliculatus_F_contig11719:623..7491622928867.652899-UTR-H-canaliculatus_F_contig11719:623..749Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11719 624..749 +
1696845595.0199907-UTR-H-canaliculatus_F_contig11719:623..7491696845595.0199907-UTR-H-canaliculatus_F_contig11719:623..749Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11719 624..749 +
1622928867.6789513-UTR-H-canaliculatus_F_contig11719:1424..18501622928867.6789513-UTR-H-canaliculatus_F_contig11719:1424..1850Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11719 1425..1850 +
1696845595.0506032-UTR-H-canaliculatus_F_contig11719:1424..18501696845595.0506032-UTR-H-canaliculatus_F_contig11719:1424..1850Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11719 1425..1850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928867.6658986-CDS-H-canaliculatus_F_contig11719:749..14241622928867.6658986-CDS-H-canaliculatus_F_contig11719:749..1424Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11719 750..1424 +
1696845595.035203-CDS-H-canaliculatus_F_contig11719:749..14241696845595.035203-CDS-H-canaliculatus_F_contig11719:749..1424Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11719 750..1424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11719.1529.1

>prot_H-canaliculatus_F_contig11719.1529.1 ID=prot_H-canaliculatus_F_contig11719.1529.1|Name=mRNA_H-canaliculatus_F_contig11719.1529.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=225bp
MTKPLLRHHAIGPGNFIAEVKLKTKKREKSRRFPHRCCPHCDCVGLLRFL
RMIVGRQTHRHAKMTPHTPQLRKAPRRAGNTCFACTHTPFTATWHPHPTR
STVTQSVHEPREKAFFASIFASSPFQQMLWQLQRDVEHALSLSPRRPATW
DAQSFGHYDRKCLLSFYFLHAEHRGSIITYMAICGTRLSPRTLPKTETIG
LRKCALPRSARRLKKQRHPPPFFE*
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mRNA from alignment at H-canaliculatus_F_contig11719:624..1850+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11719.1529.1 ID=mRNA_H-canaliculatus_F_contig11719.1529.1|Name=mRNA_H-canaliculatus_F_contig11719.1529.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1227bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11719:624..1850+ (Hapterophycus canaliculatus Oshoro5f female)
GCGAGATAGTTCGGCAGTGGCCGACGATGCTTACCGCCCAAGGAAAGTCG
GCCAATCAGAAGTCATCGGCGCCAGTGTTGACCATTAGGAAAACTGTGGG
CACGTAGGGTCTTTCTCTCTGTGGTGATGACGAAACCATTATTACGCCAC
CATGCGATCGGCCCAGGCAATTTCATTGCTGAAGTGAAGCTGAAAACAAA
AAAGAGAGAAAAATCGCGACGCTTTCCACACCGCTGCTGTCCACATTGCG
ACTGCGTAGGCTTGCTTCGATTCCTCAGGATGATCGTCGGGAGACAAACA
CACAGACACGCTAAGATGACCCCCCACACACCACAACTACGAAAAGCACC
GCGGCGAGCTGGCAACACTTGCTTCGCCTGCACACACACTCCCTTTACCG
CAACCTGGCATCCCCACCCCACCCGAAGTACAGTCACGCAAAGTGTACAC
GAACCCCGCGAAAAAGCATTCTTCGCATCTATCTTCGCATCCTCCCCTTT
CCAGCAAATGTTGTGGCAACTCCAACGAGATGTTGAACACGCGCTTTCAC
TTTCCCCACGCCGCCCAGCCACATGGGACGCGCAGAGCTTCGGCCATTAC
GACAGAAAGTGCCTTCTTTCTTTCTATTTCCTCCATGCCGAACACCGAGG
CTCCATCATCACTTACATGGCAATTTGCGGCACCAGACTTTCGCCGAGGA
CTTTGCCGAAAACCGAGACAATCGGCCTCCGAAAATGCGCGCTACCTAGG
TCTGCACGCAGACTTAAAAAACAACGCCACCCTCCCCCCTTTTTCGAGTA
ACCTACATATATAAAGAATTGTATAAATAATAGAAACTCATGAGAAATGG
GGAAATGTCGTGTTTCCCAAATGGTGCTCTGAGAACTCCCGACCATCCGA
AACTAGCGTCCTTGGTCCTCTCCAGACGCCCACATAAACTGTTACGACGA
TATTCGAAAGAAGTTCCGTTTGCAGGAACGAAGCTATTTTTCACCTCTGT
TTCTCTGCTTCGTTTGTCTCTGCATCACCGGCATCAACAACGAAGTAGCT
CCCCCTTGACTCCCACCACATACGCAACCGATGCTTCCCCCTTGCGCTGA
ATTTCTTCGGCGTCTATTTAGACGAAATAAATACGCTCACCCGTCCTGTG
TGCTTCATTGGCACACAGCAGTCGGTCCTCGCTCTGCACACCCTACTCTT
TGTCTTCATTGCCCGCGTAACGGAGAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11719:624..1850+

>mRNA_H-canaliculatus_F_contig11719.1529.1 ID=mRNA_H-canaliculatus_F_contig11719.1529.1|Name=mRNA_H-canaliculatus_F_contig11719.1529.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1350bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11719:624..1850+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGAAACCATTATTACGCCACCATGCGATCGGCCCAGGCAATTTCAT
TGCTGAAGTGAAGCTGAAAACAAAAAAGAGAGAAAAATCGCGACGCTTTC
CACACCGCTGCTGTCCACATTGCGACTGCGTAGGCTTGCTTCGATTCCTC
AGGATGATCGTCGGGAGACAAACACACAGACACGCTAAGATGACCCCCCA
CACACCACAACTACGAAAAGCACCGCGGCGAGCTGGCAACACTTGCTTCG
CCTGCACACACACTCCCTTTACCGCAACCTGGCATCCCCACCCCACCCGA
AGTACAGTCACGCAAAGTGTACACGAACCCCGCGAAAAAGCATTCTTCGC
ATCTATCTTCGCATCCTCCCCTTTCCAGCAAATGTTGTGGCAACTCCAAC
GAGATGTTGAACACGCGCTTTCACTTTCCCCACGCCGCCCAGCCACATGG
GACGCGCAGAGCTTCGGCCATTACGACAGAAAGTGCCTTCTTTCTTTCTA
TTTCCTCCATGCCGAACACCGAGGCTCCATCATCACTTACATGGCAATTT
GCGGCACCAGACTTTCGCCGAGGACTTTGCCGAAAACCGAGACAATCGGC
CTCCGAAAATGCGCGCTACCTAGGTCTGCACGCAGACTTAAAAAACAACG
CCACCCTCCCCCCTTTTTCGAGTAAATGACGAAACCATTATTACGCCACC
ATGCGATCGGCCCAGGCAATTTCATTGCTGAAGTGAAGCTGAAAACAAAA
AAGAGAGAAAAATCGCGACGCTTTCCACACCGCTGCTGTCCACATTGCGA
CTGCGTAGGCTTGCTTCGATTCCTCAGGATGATCGTCGGGAGACAAACAC
ACAGACACGCTAAGATGACCCCCCACACACCACAACTACGAAAAGCACCG
CGGCGAGCTGGCAACACTTGCTTCGCCTGCACACACACTCCCTTTACCGC
AACCTGGCATCCCCACCCCACCCGAAGTACAGTCACGCAAAGTGTACACG
AACCCCGCGAAAAAGCATTCTTCGCATCTATCTTCGCATCCTCCCCTTTC
CAGCAAATGTTGTGGCAACTCCAACGAGATGTTGAACACGCGCTTTCACT
TTCCCCACGCCGCCCAGCCACATGGGACGCGCAGAGCTTCGGCCATTACG
ACAGAAAGTGCCTTCTTTCTTTCTATTTCCTCCATGCCGAACACCGAGGC
TCCATCATCACTTACATGGCAATTTGCGGCACCAGACTTTCGCCGAGGAC
TTTGCCGAAAACCGAGACAATCGGCCTCCGAAAATGCGCGCTACCTAGGT
CTGCACGCAGACTTAAAAAACAACGCCACCCTCCCCCCTTTTTCGAGTAA
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