mRNA_H-canaliculatus_F_contig11688.1494.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11688.1494.1
Unique NamemRNA_H-canaliculatus_F_contig11688.1494.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11688.1494.1 vs. uniprot
Match: D8LLK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLK2_ECTSI)

HSP 1 Score: 249 bits (637), Expect = 4.030e-74
Identity = 131/157 (83.44%), Postives = 138/157 (87.90%), Query Frame = 1 
Query:    1 NCHEYQ-RGWGMAAGQG-DGGGRQRGRDEVYLYSLEKGFLMLRPDLRRKHGIVMANVTVSAHDPCLGGKVVQTLVKDFIGYDTVVMNWLISLYGGRGFLYGVHNNELFNLNYAAEFIESTEDIGKFLVFKIGVMFTTLFLFFTTTTLVSFTLRETQV 465
            +CHE+Q RG G  A  G +     R  DEVYLYSLEKGFLMLR DLRRKHGIV ANVTV+AHDPCLGG VVQ LVKDF+GYDTVVMNWLISLYGGRGFLYGVHNNELFNLNYAAEFIESTED+GKF VFKIGV+FTTLFLFFTTTTLVSFTLRETQV
Sbjct:  364 DCHEHQNRGRGDGAEDGVEESASGRDPDEVYLYSLEKGFLMLRADLRRKHGIVTANVTVNAHDPCLGGTVVQGLVKDFVGYDTVVMNWLISLYGGRGFLYGVHNNELFNLNYAAEFIESTEDVGKFFVFKIGVLFTTLFLFFTTTTLVSFTLRETQV 520
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11688.1494.1 vs. uniprot
Match: A0A6H5K094_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K094_9PHAE)

HSP 1 Score: 241 bits (616), Expect = 1.650e-73
Identity = 120/132 (90.91%), Postives = 124/132 (93.94%), Query Frame = 1 
Query:   67 RGRDEVYLYSLEKGFLMLRPDLRRKHGIVMANVTVSAHDPCLGGKVVQTLVKDFIGYDTVVMNWLISLYGGRGFLYGVHNNELFNLNYAAEFIESTEDIGKFLVFKIGVMFTTLFLFFTTTTLVSFTLRETQ 462
            R  DEVYLYSLEKGFLMLRPDLRRKHGIV ANVTV+AHDPCLG  VVQ LVKDF+GYDTVVMNWLISLYGGRGFLY VHNNELFNLNYAAEFIESTED+GKF VFKIGV+FTTLFLFFTTTTLVSFTLRETQ
Sbjct:  396 RDPDEVYLYSLEKGFLMLRPDLRRKHGIVTANVTVNAHDPCLGSTVVQALVKDFVGYDTVVMNWLISLYGGRGFLYSVHNNELFNLNYAAEFIESTEDVGKFFVFKIGVLFTTLFLFFTTTTLVSFTLRETQ 527
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11688.1494.1 vs. uniprot
Match: A0A835Z245_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z245_9STRA)

HSP 1 Score: 180 bits (456), Expect = 8.670e-53
Identity = 91/129 (70.54%), Postives = 105/129 (81.40%), Query Frame = 1 
Query:   76 DEVYLYSLEKGFLMLRPDLRRKHGIVMANVTVSAHDPCLGGKVVQTLVKDFIGYDTVVMNWLISLYGGRGFLYGVHNNELFNLNYAAEFIESTEDIGKFLVFKIGVMFTTLFLFFTTTTLVSFTLRETQ 462
            D+VYL+SLEKGFLMLR DLR +HGIV  NVTV   D C G  + +  ++  IGYDTVVMNWLISLY G+GFLY V   ELFNLNYA EF++STED  KF+VFK+GV+FTT+FLFFTTTTLVSFTLRETQ
Sbjct:   85 DKVYLFSLEKGFLMLRQDLRAQHGIVATNVTVPIWDDCFGTPISKWALEWVIGYDTVVMNWLISLYNGKGFLYSVSTKELFNLNYADEFLQSTEDWDKFVVFKVGVLFTTVFLFFTTTTLVSFTLRETQ 213
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11688.1494.1 vs. uniprot
Match: A0A7S1U341_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U341_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.680e-38
Identity = 79/144 (54.86%), Postives = 97/144 (67.36%), Query Frame = 1 
Query:   82 VYLYSLEKGFLMLRPDLRRKHGIVMANVTVSAHDPCLGGKVVQTLVKDFIGYDTVVMNWLISL----------------YGGRG-FLYGVHNNELFNLNYAAEFIESTEDIGKFLVFKIGVMFTTLFLFFTTTTLVSFTLRETQ 462
            VYL+S EKG+LML P LR +HGI    V +S  D CLG  +V+ L++  +G+DTVVMNW+I                  + GRG FLY V N E+FNLNYA+EF+  T D  K  +FK+GV+FTTLFLFFTTTTLVSFTLRETQ
Sbjct:  160 VYLFSAEKGYLMLAPALRSRHGISTQRVRLSLEDTCLGPPLVRQLLRHVVGFDTVVMNWIIHAKMRLGDDGGGAPGEHAFSGRGGFLYNVQNAEIFNLNYASEFLSYTGDAPKLALFKLGVLFTTLFLFFTTTTLVSFTLRETQ 303
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11688.1494.1 vs. uniprot
Match: A0A7S2SU34_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SU34_9STRA)

HSP 1 Score: 136 bits (342), Expect = 7.400e-36
Identity = 69/133 (51.88%), Postives = 96/133 (72.18%), Query Frame = 1 
Query:   67 RGRDEVYLY-SLEKGFLMLRPDLRRKHGIVMANVTVSAHDPCLGGKVVQTLVKDFIGYDTVVMNWLISLYGGRGFLYGVHNNELFNLNYAAEFIESTEDIGKFLVFKIGVMFTTLFLFFTTTTLVSFTLRETQ 462
            +G +   LY SLEKG+L+L  D+  +H + +  VT+     CLG   ++ L+ + IG+DTV MNW+I++  G G+LY   ++EL+NLNYA EF+ S ED+GKF+ +K+GV+ TTLFLFF TTTLVSFTLRETQ
Sbjct:    5 QGANAYSLYFSLEKGWLLLGTDIIERHHVAVGTVTIDGDAACLGPTPMRHLLYNIIGFDTVAMNWMIAISQGHGYLYSSSSHELYNLNYAREFVASREDVGKFVGYKLGVICTTLFLFFVTTTLVSFTLRETQ 137
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11688.1494.1 vs. uniprot
Match: A9SN20_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SN20_PHYPA)

HSP 1 Score: 134 bits (338), Expect = 4.880e-34
Identity = 67/129 (51.94%), Postives = 89/129 (68.99%), Query Frame = 1 
Query:   76 DEVYLYSLEKGFLMLRPDLRRKHGIVMANVTVSAHDPCLGGKVVQTLVKDFIGYDTVVMNWLISLYGGRGFLYGVHNNELFNLNYAAEFIESTEDIGKFLVFKIGVMFTTLFLFFTTTTLVSFTLRETQ 462
            D  YLYS+EKG+LM+    + +H +   N++VSAH PC G +  Q L+ +F+GYDT++MN L+S YG RG+LY     EL+NLNY  EF    + I  ++V K GV+ TTLF+FFTTT  VSFTLRETQ
Sbjct:   45 DPTYLYSIEKGYLMMTETAKNRHDVKTINISVSAHHPCFGNRWQQFLIDNFVGYDTILMNSLLSAYG-RGYLYNFQTKELYNLNYLQEFGSVPQGIEDYIVSKCGVLITTLFVFFTTTMSVSFTLRETQ 172
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11688.1494.1 vs. uniprot
Match: A0A7I4DG45_PHYPA (Uncharacterized protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4DG45_PHYPA)

HSP 1 Score: 134 bits (338), Expect = 1.250e-33
Identity = 67/129 (51.94%), Postives = 89/129 (68.99%), Query Frame = 1 
Query:   76 DEVYLYSLEKGFLMLRPDLRRKHGIVMANVTVSAHDPCLGGKVVQTLVKDFIGYDTVVMNWLISLYGGRGFLYGVHNNELFNLNYAAEFIESTEDIGKFLVFKIGVMFTTLFLFFTTTTLVSFTLRETQ 462
            D  YLYS+EKG+LM+    + +H +   N++VSAH PC G +  Q L+ +F+GYDT++MN L+S YG RG+LY     EL+NLNY  EF    + I  ++V K GV+ TTLF+FFTTT  VSFTLRETQ
Sbjct:  290 DPTYLYSIEKGYLMMTETAKNRHDVKTINISVSAHHPCFGNRWQQFLIDNFVGYDTILMNSLLSAYG-RGYLYNFQTKELYNLNYLQEFGSVPQGIEDYIVSKCGVLITTLFVFFTTTMSVSFTLRETQ 417
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11688.1494.1 vs. uniprot
Match: A0A7S2F472_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F472_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.020e-30
Identity = 60/130 (46.15%), Postives = 89/130 (68.46%), Query Frame = 1 
Query:   76 DEVYLYSLEKGFLMLRPDLRRKHGIVMANVTVSAHDPCLGGKVVQTLVKDFIGYDTVVMNWLISLYGGRGFLYGVHNNELFNLNYAAEFIESTE-DIGKFLVFKIGVMFTTLFLFFTTTTLVSFTLRETQ 462
            D  +L+S EKG+L+L  D   +HGI + +VTV     CLG   ++ L+   +G DT+VMNWL++L+GGRG++Y   + E++NL+  ++F+ +   + GK +  K GV+ T+ FLFF TTTLVSFTLRETQ
Sbjct:   51 DNSFLFSNEKGWLLLGKDALHRHGIKVRSVTVPDGSLCLGPTFLRWLLHHVVGQDTLVMNWLVALFGGRGYVYASGSREVYNLSQGSQFMNNAHMEYGKLVALKFGVLCTSTFLFFITTTLVSFTLRETQ 180
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11688.1494.1 vs. uniprot
Match: A0A7J6VVN8_THATH (Membralin n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6VVN8_THATH)

HSP 1 Score: 117 bits (293), Expect = 7.470e-30
Identity = 60/134 (44.78%), Postives = 85/134 (63.43%), Query Frame = 1 
Query:   61 RQRGRDEVYLYSLEKGFLMLRPDLRRKHGIVMANVTVSAHDPCLGGKVVQTLVKDFIGYDTVVMNWLISLYGGRGFLYGVHNNELFNLNYAAEFIESTEDIGKFLVFKIGVMFTTLFLFFTTTTLVSFTLRETQ 462
            R R  +  YLY++EKG+ +L    + +H I   N+++SA D C G    Q L+  F+GYDT++MN L+S   G+G+LY     E ++LNYA +  E +   G +LV K GV+  +LF+FFTTT  VSFTLRETQ
Sbjct:   20 RGRSFEPTYLYTVEKGYFLLPEGAKSRHNIHTVNISISARDSCFGNMWQQLLINSFVGYDTILMNSLLSS-PGQGYLYNYQTKEFYDLNYAHDSTEGSTQFGDYLVKKCGVLIMSLFVFFTTTMSVSFTLRETQ 152
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11688.1494.1 vs. uniprot
Match: A0A2R6XHC8_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XHC8_MARPO)

HSP 1 Score: 123 bits (308), Expect = 1.380e-29
Identity = 65/134 (48.51%), Postives = 87/134 (64.93%), Query Frame = 1 
Query:   61 RQRGRDEVYLYSLEKGFLMLRPDLRRKHGIVMANVTVSAHDPCLGGKVVQTLVKDFIGYDTVVMNWLISLYGGRGFLYGVHNNELFNLNYAAEFIESTEDIGKFLVFKIGVMFTTLFLFFTTTTLVSFTLRETQ 462
            R++  D  YLYS+EKG+LML    +  H I   NVT+SA + C G K  Q L+ +F+GYDT++MN L++    +G+LY     EL+NLNY  EF         ++VFK GV+ T+LF+FFTTT  VSFTLRETQ
Sbjct:  279 RRKVLDPTYLYSVEKGYLMLSEGAKFHHNIKTVNVTISAQNACFGNKWQQLLIDNFVGYDTILMNSLLNA-REKGYLYNFQTKELYNLNYLQEFSGVPHGFEDYIVFKCGVLITSLFVFFTTTMSVSFTLRETQ 411
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11688.1494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLK2_ECTSI4.030e-7483.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K094_9PHAE1.650e-7390.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z245_9STRA8.670e-5370.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1U341_9STRA2.680e-3854.86Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2SU34_9STRA7.400e-3651.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A9SN20_PHYPA4.880e-3451.94Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A7I4DG45_PHYPA1.250e-3351.94Uncharacterized protein n=5 Tax=Physcomitrium pate... [more]
A0A7S2F472_9STRA2.020e-3046.15Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7J6VVN8_THATH7.470e-3044.78Membralin n=1 Tax=Thalictrum thalictroides TaxID=4... [more]
A0A2R6XHC8_MARPO1.380e-2948.51Uncharacterized protein n=1 Tax=Marchantia polymor... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11688contigH-canaliculatus_F_contig11688:1092..3773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score245.4
Seed ortholog evalue1.7e-62
Seed eggNOG ortholog2880.D8LLK2
Preferred nameTMEM259
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0008150,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010604,GO:0010941,GO:0012505,GO:0019222,GO:0030162,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0032268,GO:0032270,GO:0033554,GO:0034976,GO:0042176,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060548,GO:0061136,GO:0065007,GO:0080090,GO:0080134,GO:0080135,GO:1901214,GO:1901215,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1905897,GO:1905898
EggNOG free text desc.positive regulation of ERAD pathway
EggNOG OGsKOG2092@1,KOG2092@2759
Ec32 ortholog descriptionMembralin
Ec32 orthologEc-04_005490.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size474
Cds size444
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11688.1494.1prot_H-canaliculatus_F_contig11688.1494.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11688 1122..3773 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928860.855052-UTR-H-canaliculatus_F_contig11688:1091..11211622928860.855052-UTR-H-canaliculatus_F_contig11688:1091..1121Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11688 1092..1121 +
1696845592.5426407-UTR-H-canaliculatus_F_contig11688:1091..11211696845592.5426407-UTR-H-canaliculatus_F_contig11688:1091..1121Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11688 1092..1121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928860.871602-CDS-H-canaliculatus_F_contig11688:1121..13011622928860.871602-CDS-H-canaliculatus_F_contig11688:1121..1301Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11688 1122..1301 +
1696845592.5596123-CDS-H-canaliculatus_F_contig11688:1121..13011696845592.5596123-CDS-H-canaliculatus_F_contig11688:1121..1301Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11688 1122..1301 +
1622928860.89352-CDS-H-canaliculatus_F_contig11688:2949..30961622928860.89352-CDS-H-canaliculatus_F_contig11688:2949..3096Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11688 2950..3096 +
1696845592.5703025-CDS-H-canaliculatus_F_contig11688:2949..30961696845592.5703025-CDS-H-canaliculatus_F_contig11688:2949..3096Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11688 2950..3096 +
1622928860.912896-CDS-H-canaliculatus_F_contig11688:3656..37731622928860.912896-CDS-H-canaliculatus_F_contig11688:3656..3773Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11688 3657..3773 +
1696845592.5823312-CDS-H-canaliculatus_F_contig11688:3656..37731696845592.5823312-CDS-H-canaliculatus_F_contig11688:3656..3773Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11688 3657..3773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11688.1494.1

>prot_H-canaliculatus_F_contig11688.1494.1 ID=prot_H-canaliculatus_F_contig11688.1494.1|Name=mRNA_H-canaliculatus_F_contig11688.1494.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=148bp
MAAGQGDGGGRQRGRDEVYLYSLEKGFLMLRPDLRRKHGIVMANVTVSAH
DPCLGGKVVQTLVKDFIGYDTVVMNWLISLYGGRGFLYGVHNNELFNLNY
AAEFIESTEDIGKFLVFKIGVMFTTLFLFFTTTTLVSFTLRETQVPK*
back to top

mRNA from alignment at H-canaliculatus_F_contig11688:1092..3773+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11688.1494.1 ID=mRNA_H-canaliculatus_F_contig11688.1494.1|Name=mRNA_H-canaliculatus_F_contig11688.1494.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2682bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11688:1092..3773+ (Hapterophycus canaliculatus Oshoro5f female)
AATTGCCACGAGTACCAACGGGGATGGGGGATGGCGGCGGGCCAGGGGGA
TGGAGGCGGCCGTCAGCGCGGGCGAGACGAGGTTTACCTGTACTCCTTGG
AAAAAGGGTTCCTGATGCTCAGGCCCGATCTCCGGCGGAAACACGGGATC
GTGATGGCGAATGTCACCGTCAGCGCTCACGATCCCTGTCTGGGGGGCAA
GGTCGTCCAGGTGACTGTTGCGAAGCCGCGATAGCGGTCTCGGTTGGTGG
TGGATTTAGTTTTGATGCTGGGTGTGTTGGTCGTGGTGCTGCTGCTGCGG
TGCCGATTTGAGGATTTCACAGCGGGGCAGGCGTCTTCGACATAATCGCG
TGCGGGACCGCGTTTTCGCCGGCTTGGGGTGCGCGAGGTCGGTTTTTACC
CTATTCGGCTCGAATCCGATTCGTGTGAGGGCATTTCCAAACAAAGGTGT
TGGCCTGCAGGAGTTGTTGGTGTAGTAGTTATTTGTGGCTCTCATAATTT
TCGTCTCCAAAGCCTACTTCTTCCTGGAGGGACCTTTGACATCGGCAGTT
TTGTTAGTACCAACATAATTAGCTTACAAAGTGAAGCCGCCTAGTAAGAA
AACAGTAACAATGTCAAAATCAAGGTCGTTAGCTAGAGCCAGCCTGTTCG
GTGCCAGTAAATTTCAAGTGTGGCTACTGGCACAACAGTCCACACCAAAA
GACGATGAAAATCGTGCTTGCTCTAGAAAAATTCAGTACATCATGAGGGA
GACTGAGGATTGAATTTGATCGATTGTAGAATCATGCAAGTGGGAGAGGG
AAAATAGCCGAGCATTGAAGAGGATATCTTCCTACAGGTTGTGTGACATC
TACAGCCGGGTCGCCAGGAGACGCAAGCGCATGAAGAGTTTCAAGTACTG
TTGTCAGTGCAGAAAAATAGATGAACCGAGCGTCGATGCCAGGGCTATTT
TACGTTCAGCATCGAGATCGTCATCGCCGGATCAGTCTTTCCTTACCCGC
CGAATCCTCCACAGCCGGACGCTTCTGCACATACTCTTCAACCCCAAGTT
TTCACGCTACTCAACGCTGCGCCCTATTTTCTGTCGTGACAGGTTTTCCG
TTTTCCGTGCGTCACCCCCGGTTGACTTCAACCCACTCCGCGGGGAAATC
TTTTGTATTGTAGCATTTCGGCTTCTGGAGAGTTTGGTGTCGGGACAGAG
ATGTACTTCACTGAAAGCAATCGCGGGGTTCGAGTGGGCCATGATGGGAA
GTGGCGGCATGCTAGCGTAAATCTGGCTTCGATGTTAACGTTGCCACACT
CTGCCGTCCCCCTCGTCACCGGCTTCCTGGTCACGCCCCCCCCCCAGTGC
GATCGCTGGCACGAGAACGATCAAGCCTCACAAAAGCTCGGCCCTCGCCG
CTTGCTGCTGTGGAAGCTTGTCTATTGGTCTCCCCATCGTGGTCGTTTCC
CGCCCGCCGAGCCCGTCGCCACAACTGCTCCCGGGGGTGTGGATACGGCG
CACAAGTAGTACGATGTGGTTGGTCTTTCTTGAAGCCCTGTCTGGACGAT
GGCGGTCCTTGAATCTGCAAACCCGGAGCCCCCAGAGCACCTCGGCTATC
GTCTTGGATTGCCACTCCTGCCTGTACCTCTGAGGCAGGTTGTTGGTCTA
CATGGTCCTTCCCCTCCTGCCTCCCCCCCCCTCCCCCCCAGGCTCTTCGT
CTCAGCCCGTGCGCATTTTTTCCGGTTGTTTTGGGCGTGTCAAATTGTAG
GAGTGCAACCCCGCGACCTGGTACGATTGACGATTGACACGAGAAAAAAA
AAAACGCGCTCCCCACCGCCGTGCTCGGCGCCACACGACACCCACCGGCC
ACGTTCAGACGCTGGTGAAGGACTTCATCGGCTACGACACGGTTGTGATG
AACTGGCTCATCTCACTGTACGGGGGCCGCGGCTTCCTCTACGGCGTGCA
CAACAACGAGCTCTTCAACCTCAACTACGCGGCCGAGTTCATCGAGTCCA
CCGAGGTATGAGAGGAAACGGGACGGCGCTTCGGCGGGGAGCACCCAAGT
CGCTTGTCGGGATGACCTCGTGTGAAGTGTGCGTGCTCGTTTCGATGTAA
CGCAAGGCGCAAGATGCCGGCGTAGCTCGCGCGGGTCTTTCGGCATCGCG
CTCGAGGTAGGATCACCCCTCCCCCGCCCGCCTTGAGTCTCGTCTGCTTT
TCACTGGTGGGAGATGGCGTCTTCGACCGCTGTGGCTTCAAATCCTGAGG
CTCTCCCCGATAACGTGGAATGCAGAGATGCGACCCTAGCCGGCGCGCAC
TGCTGTGTGTTTTCACGCTTCGTAGGCGTTTTGGAATCATCTGCCAATCC
CTCGTAAAACTCTTTGTTAGTGCGAGTGGGCGGCAGCACCTGAATTTGCT
CTCGAATCTGCTCTCGCATGGCAGGTGGTGTTTTACTTCCTTCCTCGGCG
TGTCCCGTGCCTTAATTTTTTCTTTTATACCACTTGCTTCGAAGTAAATA
TTTCTTCCTCTTTCGTGTGCTTGTTTTCTTCATTTGTTTTTTCTCGACGT
CTCGGCCCCGCGCAGGATATCGGAAAGTTCTTGGTGTTCAAGATCGGGGT
CATGTTCACGACCCTGTTCCTGTTCTTCACCACGACCACCCTCGTGTCGT
TTACTCTGAGAGAGACCCAGGTGCCCAAATAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11688:1092..3773+

>mRNA_H-canaliculatus_F_contig11688.1494.1 ID=mRNA_H-canaliculatus_F_contig11688.1494.1|Name=mRNA_H-canaliculatus_F_contig11688.1494.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=888bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11688:1092..3773+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCGGCGGGCCAGGGGGATGGAGGCGGCCGTCAGCGCGGGCGAGACGA
GGTTTACCTGTACTCCTTGGAAAAAGGGTTCCTGATGCTCAGGCCCGATC
TCCGGCGGAAACACGGGATCGTGATGGCGAATGTCACCGTCAGCGCTCAC
GATCCCTGTCTGGGGGGCAAGGTCGTCCAGATGGCGGCGGGCCAGGGGGA
TGGAGGCGGCCGTCAGCGCGGGCGAGACGAGGTTTACCTGTACTCCTTGG
AAAAAGGGTTCCTGATGCTCAGGCCCGATCTCCGGCGGAAACACGGGATC
GTGATGGCGAATGTCACCGTCAGCGCTCACGATCCCTGTCTGGGGGGCAA
GGTCGTCCAGACGCTGGTGAAGGACTTCATCGGCTACGACACGGTTGTGA
TGAACTGGCTCATCTCACTGTACGGGGGCCGCGGCTTCCTCTACGGCGTG
CACAACAACGAGCTCTTCAACCTCAACTACGCGGCCGAGTTCATCGAGTC
CACCGAGACGCTGGTGAAGGACTTCATCGGCTACGACACGGTTGTGATGA
ACTGGCTCATCTCACTGTACGGGGGCCGCGGCTTCCTCTACGGCGTGCAC
AACAACGAGCTCTTCAACCTCAACTACGCGGCCGAGTTCATCGAGTCCAC
CGAGGATATCGGAAAGTTCTTGGTGTTCAAGATCGGGGTCATGTTCACGA
CCCTGTTCCTGTTCTTCACCACGACCACCCTCGTGTCGTTTACTCTGAGA
GAGACCCAGGTGCCCAAATAGGATATCGGAAAGTTCTTGGTGTTCAAGAT
CGGGGTCATGTTCACGACCCTGTTCCTGTTCTTCACCACGACCACCCTCG
TGTCGTTTACTCTGAGAGAGACCCAGGTGCCCAAATAG
back to top