mRNA_H-canaliculatus_F_contig11671.1481.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11671.1481.1
Unique NamemRNA_H-canaliculatus_F_contig11671.1481.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11671.1481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11671contigH-canaliculatus_F_contig11671:2050..4000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size758
Cds size756
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928859.5876255-CDS-H-canaliculatus_F_contig11671:2049..27331622928859.5876255-CDS-H-canaliculatus_F_contig11671:2049..2733Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11671 2050..2733 +
1696845592.111323-CDS-H-canaliculatus_F_contig11671:2049..27331696845592.111323-CDS-H-canaliculatus_F_contig11671:2049..2733Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11671 2050..2733 +
1622928859.6042166-CDS-H-canaliculatus_F_contig11671:3927..39991622928859.6042166-CDS-H-canaliculatus_F_contig11671:3927..3999Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11671 3928..3999 +
1696845592.1201217-CDS-H-canaliculatus_F_contig11671:3927..39991696845592.1201217-CDS-H-canaliculatus_F_contig11671:3927..3999Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11671 3928..3999 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11671.1481.1prot_H-canaliculatus_F_contig11671.1481.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11671 2050..3999 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11671.1481.1

>prot_H-canaliculatus_F_contig11671.1481.1 ID=prot_H-canaliculatus_F_contig11671.1481.1|Name=mRNA_H-canaliculatus_F_contig11671.1481.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=252bp
APPNVDRARSPHRSSSGSGSHHHHPHHHHRRGHQEPAAAAAAAGTGGDHN
SFVRNSRSPSSSGSSNGGGDGDGRGRGGGGGGGGVSPPPKPSRDARTGRH
NYHHIQQRSGGGGGGDGGGGSNRGSGSGRHDTPGGGNGGGEYGEWDGALQ
NSVVKVIPQPSSTASRGVGGSFGISDRSSSRSPTPKSSWKSSPPAQGPAS
MAQNSSDSRRGHHPHRQHHQHQQRHHRQQVSPPQSASSQQPRQGSPSRQY
QP
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mRNA from alignment at H-canaliculatus_F_contig11671:2050..4000+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11671.1481.1 ID=mRNA_H-canaliculatus_F_contig11671.1481.1|Name=mRNA_H-canaliculatus_F_contig11671.1481.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1951bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11671:2050..4000+ (Hapterophycus canaliculatus Oshoro5f female)
GCCCCTCCCAATGTCGATCGGGCACGCTCACCTCATCGCAGCAGTAGCGG
CAGCGGCAGCCACCACCATCATCCCCACCACCACCATAGACGCGGCCACC
AGGAGCCCGCCGCCGCCGCAGCAGCAGCAGGGACGGGCGGCGACCACAAC
AGCTTCGTTCGGAATTCACGGTCCCCGTCGAGCAGCGGCAGCAGCAACGG
CGGGGGCGACGGCGACGGGAGGGGCCGTGGTGGTGGTGGTGGTGGTGGTG
GTGTGTCGCCACCCCCCAAACCGTCTCGAGACGCACGGACCGGGCGGCAC
AATTACCACCACATCCAGCAGCGGAGCGGTGGCGGCGGTGGCGGCGACGG
CGGCGGCGGTAGCAATCGAGGATCTGGTAGCGGCCGACACGACACACCTG
GCGGTGGCAATGGAGGTGGGGAATACGGAGAGTGGGACGGGGCGCTCCAA
AATTCAGTGGTGAAGGTTATCCCTCAGCCGTCGTCGACGGCCTCCAGGGG
CGTGGGCGGCAGCTTCGGCATCTCGGACCGCTCCTCATCGCGATCGCCAA
CGCCGAAGTCTTCCTGGAAGTCGTCGCCACCGGCCCAGGGACCGGCGTCG
ATGGCGCAAAACTCGTCCGACTCGCGCCGCGGGCACCACCCTCACCGCCA
ACACCACCAGCACCAACAACGCCATCATCGGCAGGTACGACCCGGGGTGG
TGGTTCGATGCCTGCGCTGTCGCCGGTGTTGTTACGGGCTCGTGGCGGCG
GCGACGGGTGTGTAGCTATCTTTGGATGCCTTTTGTACGGTGCGCGTTCG
GGCGGTGGGGAGCGCTTAGCATGGATGGGTAGCTCTTGCGCGTTCGCCAG
CACGCGCATGTAACCTCTCGGTGTGAGCGTCGGCGGTGAGTGCCAGTCGT
CGTAAAAGGACAGGAACCGCCGCCGTCGCCGCCGCCGCCGCCGCAGCAGC
AGCAGTAGAAGCAGCAGCAGCAGCAGCAGCAGTTCTGATCCTGAAGCGCC
GTTCTGTTGGCCCTGCGAGCGGAGACCGTTACGCACGCACGTGTCTCTTG
TTCCGTCGAGGGTGGCCACGCTTGATCCCGCCGACGACGTTTTCCTCGCA
CGTAGCTAACGGCCAGCTTTGCCGCTGGATCCGACTGGCGCGTGAAGCGG
GTACCGTATACGACAGAAGATACCATACCCCCTGGACCGATTTTTAAAGC
GTGGTTACTCCGCGACCAGTATGATTCGAACACCAAATGAAACATTTTCT
GGCAGCTCTCGAAGAGATCTTTCAAGAGATCTTTCCAGCGCCGCACGTTT
CGGGATCGGTATCTCTTTTGCTGAGAACTTGAGGTTTGAAAATCGGTCCA
GGGGGTGTGGTATCTTATGTCGTATATGGCAGGCAGGCGGACGAGCAGGG
TGACACGCGCCCTCCGCTCCGCGCCGCGCCGTACGCCTCCGTTGACCACG
CTCCAGTCTGTACACCTAGGGGTCGCGCTGGGCTTCCTCTGCGGAGACGT
CAGGGAAACCATGAGAGGGCTCCTTTCCTTTCTCGTAGCCGCGCTCAAGG
GCGAGGGCGCCTTCACATGTCCATAAACGCCCCAAGATTTTGCGTTTTGC
TCGTGCAATATTCGGGCGAGATTGCCGCAATGGTAAAGGCTGCGGGTCGG
TGTGAGGATGAACAAGCGTTAAGATTTTGGCCGTGCGCCGGCGAGGAGCC
ATTATACCTGACCAACTCTCACGCCCCCCCCCCTCCCCACACACAGAAAA
TCGGGAATACGTAATGGCATAGCTTTCGGTGCTCTGCGAAAGCGAGAAGA
CCGTGGCCCATTTTTCTCATTGGAATGTGACGGCCAGCAATTTTTTCTCC
CGCGCCGGTGTTGCAACCACAACAACAGCAGGTATCACCACCGCAATCGG
CCTCATCGCAGCAACCCCGTCAAGGCTCCCCAAGCCGCCAGTACCAACCA
T
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11671:2050..4000+

>mRNA_H-canaliculatus_F_contig11671.1481.1 ID=mRNA_H-canaliculatus_F_contig11671.1481.1|Name=mRNA_H-canaliculatus_F_contig11671.1481.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1512bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11671:2050..4000+ (Hapterophycus canaliculatus Oshoro5f female)
GCCCCTCCCAATGTCGATCGGGCACGCTCACCTCATCGCAGCAGTAGCGG
CAGCGGCAGCCACCACCATCATCCCCACCACCACCATAGACGCGGCCACC
AGGAGCCCGCCGCCGCCGCAGCAGCAGCAGGGACGGGCGGCGACCACAAC
AGCTTCGTTCGGAATTCACGGTCCCCGTCGAGCAGCGGCAGCAGCAACGG
CGGGGGCGACGGCGACGGGAGGGGCCGTGGTGGTGGTGGTGGTGGTGGTG
GTGTGTCGCCACCCCCCAAACCGTCTCGAGACGCACGGACCGGGCGGCAC
AATTACCACCACATCCAGCAGCGGAGCGGTGGCGGCGGTGGCGGCGACGG
CGGCGGCGGTAGCAATCGAGGATCTGGTAGCGGCCGACACGACACACCTG
GCGGTGGCAATGGAGGTGGGGAATACGGAGAGTGGGACGGGGCGCTCCAA
AATTCAGTGGTGAAGGTTATCCCTCAGCCGTCGTCGACGGCCTCCAGGGG
CGTGGGCGGCAGCTTCGGCATCTCGGACCGCTCCTCATCGCGATCGCCAA
CGCCGAAGTCTTCCTGGAAGTCGTCGCCACCGGCCCAGGGACCGGCGTCG
ATGGCGCAAAACTCGTCCGACTCGCGCCGCGGGCACCACCCTCACCGCCA
ACACCACCAGCACCAACAACGCCATCATCGGCAGGCCCCTCCCAATGTCG
ATCGGGCACGCTCACCTCATCGCAGCAGTAGCGGCAGCGGCAGCCACCAC
CATCATCCCCACCACCACCATAGACGCGGCCACCAGGAGCCCGCCGCCGC
CGCAGCAGCAGCAGGGACGGGCGGCGACCACAACAGCTTCGTTCGGAATT
CACGGTCCCCGTCGAGCAGCGGCAGCAGCAACGGCGGGGGCGACGGCGAC
GGGAGGGGCCGTGGTGGTGGTGGTGGTGGTGGTGGTGTGTCGCCACCCCC
CAAACCGTCTCGAGACGCACGGACCGGGCGGCACAATTACCACCACATCC
AGCAGCGGAGCGGTGGCGGCGGTGGCGGCGACGGCGGCGGCGGTAGCAAT
CGAGGATCTGGTAGCGGCCGACACGACACACCTGGCGGTGGCAATGGAGG
TGGGGAATACGGAGAGTGGGACGGGGCGCTCCAAAATTCAGTGGTGAAGG
TTATCCCTCAGCCGTCGTCGACGGCCTCCAGGGGCGTGGGCGGCAGCTTC
GGCATCTCGGACCGCTCCTCATCGCGATCGCCAACGCCGAAGTCTTCCTG
GAAGTCGTCGCCACCGGCCCAGGGACCGGCGTCGATGGCGCAAAACTCGT
CCGACTCGCGCCGCGGGCACCACCCTCACCGCCAACACCACCAGCACCAA
CAACGCCATCATCGGCAGCAGGTATCACCACCGCAATCGGCCTCATCGCA
GCAACCCCGTCAAGGCTCCCCAAGCCGCCAGTACCAACCACAGGTATCAC
CACCGCAATCGGCCTCATCGCAGCAACCCCGTCAAGGCTCCCCAAGCCGC
CAGTACCAACCA
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