prot_H-canaliculatus_F_contig1164.1446.1 (polypeptide) Hapterophycus canaliculatus Oshoro5f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_F_contig1164.1446.1
Unique Nameprot_H-canaliculatus_F_contig1164.1446.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Sequence length241
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1164.1446.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.020e-39
Identity = 80/136 (58.82%), Postives = 97/136 (71.32%), Query Frame = 0 
Query:   77 SQTLQVSTVCGFCGGEGCRTTIKNPPCKAAPLIRSTCPSATRRDARHEAVVVSLKSAGAGSKASPCSNIAMKCILCSQETFIWKYVTADHVTRCHKEDALVKEGTEVATNFKRAYTILESEKAMVLGKLRGRNPRR 212
            ++T  VSTVCGFCGG GCR+TI +PP +A PL+ STCPSA R DAR EAV ++L SA A S  SPC+N+ +KC LCSQ+ +IW Y   DHVTRCH+ + LV  GT  A  FK A TI ESEKA VL K++   PRR
Sbjct: 1083 NKTSPVSTVCGFCGGVGCRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHVTRCHQANVLVAVGTG-ADKFKEACTISESEKAKVLHKVKAGRPRR 1217
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BLAST of mRNA_H-canaliculatus_F_contig1164.1446.1 vs. uniprot
Match: D7FNW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW9_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 7.460e-16
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 0 
Query:  145 IAMKCILCSQETFIWKYVTADHVTRCHKEDALVKEGTEVATNFKRAYTILESEKAMVLGKLRGRNPRRCR--SDGLPQG 221
            + +KC+ CSQ+T+IWKY  ++HVTRCH+ED LV  GT V   FK AYTI ESEKA VL K +   PRR    ++ LP G
Sbjct:    1 MVLKCLFCSQDTYIWKYGMSEHVTRCHREDILVAAGTTV-DRFKEAYTISESEKAKVLQKFKAGRPRRRGQGNEALPTG 78
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1164.1446.1 vs. uniprot
Match: A0A6H5K5R3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5R3_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.940e-10
Identity = 43/100 (43.00%), Postives = 56/100 (56.00%), Query Frame = 0 
Query:  145 IAMKCILCSQETFIWKYVTADHVTRCHKEDALVKEGTEVATNFKRAYTILESEKAMVLGKLRGRNPRRCRSDG---LPQG----------TSRGLPGTRA 231
            + +KC +CSQ  +IWKY  ++HVTR H+ED  V  GT V   FK AY+I ESEKA  L K +   PR+ R  G   LP G          + R + GTR+
Sbjct:    1 MVLKCFVCSQNNYIWKYGMSEHVTRRHQEDMRVAAGTGV-DKFKEAYSISESEKAKALHKFKAGKPRQ-RGQGNEVLPPGALGRTEGNGASGRNMAGTRS 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1164.1446.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE1.020e-3958.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
D7FNW9_ECTSI7.460e-1654.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5R3_9PHAE2.940e-1043.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1164contigH-canaliculatus_F_contig1164:10336..11058 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1164.1446.1mRNA_H-canaliculatus_F_contig1164.1446.1Hapterophycus canaliculatus Oshoro5f femalemRNAH-canaliculatus_F_contig1164 10336..12090 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_F_contig1164.1446.1 ID=prot_H-canaliculatus_F_contig1164.1446.1|Name=mRNA_H-canaliculatus_F_contig1164.1446.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=241bp
MLLGTIKLESAEIVNVDVAMLPPPETLKALRCPPLLLFRETDHFVYKRSV
SSWSLLHKIVCIFQATAGRPRYLFVLSQTLQVSTVCGFCGGEGCRTTIKN
PPCKAAPLIRSTCPSATRRDARHEAVVVSLKSAGAGSKASPCSNIAMKCI
LCSQETFIWKYVTADHVTRCHKEDALVKEGTEVATNFKRAYTILESEKAM
VLGKLRGRNPRRCRSDGLPQGTSRGLPGTRAKPTCTKRTVI
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