mRNA_H-canaliculatus_F_contig11611.1422.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11611.1422.1
Unique NamemRNA_H-canaliculatus_F_contig11611.1422.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11611.1422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11611contigH-canaliculatus_F_contig11611:37..1649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size385
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928853.3163195-CDS-H-canaliculatus_F_contig11611:36..3791622928853.3163195-CDS-H-canaliculatus_F_contig11611:36..379Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11611 37..379 +
1696845589.3808775-CDS-H-canaliculatus_F_contig11611:36..3791696845589.3808775-CDS-H-canaliculatus_F_contig11611:36..379Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11611 37..379 +
1622928853.3350205-CDS-H-canaliculatus_F_contig11611:1607..16481622928853.3350205-CDS-H-canaliculatus_F_contig11611:1607..1648Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11611 1608..1648 +
1696845589.3893406-CDS-H-canaliculatus_F_contig11611:1607..16481696845589.3893406-CDS-H-canaliculatus_F_contig11611:1607..1648Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11611 1608..1648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11611.1422.1prot_H-canaliculatus_F_contig11611.1422.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11611 37..1648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11611.1422.1

>prot_H-canaliculatus_F_contig11611.1422.1 ID=prot_H-canaliculatus_F_contig11611.1422.1|Name=mRNA_H-canaliculatus_F_contig11611.1422.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=128bp
TSSGQQQPTTASAPTAAATAAAAAAATATASPPARPPPSPERRIGSRSSG
DGDGGCSRSGTRVVGSGERLSPDGRGQHAGGVGGGYGSGDGSGDAAGRYG
YDGGGGGVGARVNVVGRGRGSSGSADVR
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mRNA from alignment at H-canaliculatus_F_contig11611:37..1649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11611.1422.1 ID=mRNA_H-canaliculatus_F_contig11611.1422.1|Name=mRNA_H-canaliculatus_F_contig11611.1422.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1613bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11611:37..1649+ (Hapterophycus canaliculatus Oshoro5f female)
ACCTCCTCAGGTCAACAACAACCAACCACTGCCTCTGCTCCAACAGCAGC
AGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCCTCCCCCCCCG
CGAGGCCCCCCCCCTCCCCAGAACGGCGGATCGGCAGTCGGAGCAGCGGC
GACGGCGACGGCGGCTGCAGCCGGAGCGGCACCCGGGTTGTCGGCAGCGG
CGAACGCCTATCGCCCGATGGACGCGGTCAACACGCAGGCGGTGTCGGTG
GAGGTTATGGCAGCGGGGACGGGAGCGGGGATGCCGCCGGGAGGTATGGG
TATGACGGCGGCGGCGGCGGAGTGGGTGCCCGTGTCAACGTCGGTGAGTG
CCGGCGGCGGGGGCGGCGGCGTCGGCGGGATGGCGAAGGCAGTTTTTTTT
TGGGCTGTTGACTGTTGTCGCTGTGCTGACGAACGGTTACTGGGGCAGTG
ACGATGTTTATGGTGGCGGTGGTAATGCTGCTGCCGCTGCTGCCGCTGCT
GCCGCTTTTCGTTCCTGCCATCGTGTGCCCACGACAGGCACTTGAGCAAC
AACGATTGAACAGCCTCGGAGACGTGAGGCGGCGGCTCCGATGAGTTCAT
TGGAGTAATGTCACGCCGTTCTTTCCTATTCTCATCCTCCGCGAGTTGTC
GCCAGAACCGTTCGTTCAGCATCGCGCGCCGTTGCTGCTTGAGATGCCGC
TGTCCCCGTTCTCTGTCTCGACTTTCGAGGAGGCGCTCGTCGCCGACGCC
GCGTCGCTGCCCACGTCATTCACGCGCGCGATTCCGGTGCTGCCGTCGTA
TTCCTTGCTTCCTGGCCCTTGACGCGTTTCGTCGGTGGTGCAGCACGTCA
TGACTCGTCTCGTTGTTGGCAGGAACGAACCAAAAGCGCCTAGTACGTGT
ACCGCCCGCCGTCTGTCTCGCCTCACGCGCGTACGGTTGTTTCGTCCGAT
GCCGTCAGACGCTTGTCGACCCTGCTGGACCCTCACTGCGAGGAATCGAA
CAAGACTCGCTCCTCCTGGGTCGTTTAGATTTTGCCTCAGGGGAGGGTAT
CCCTGAAGCGTTGTCGACTCTTTCTTTTTAACAGCTTCTCCTGTTCATGT
CGTTATCCCAAGCATACTCGGCACGACTCGTGGTCAACCCTCGTTGTTTG
ACTCTCTCCTTTCAGAAAGCTTCTTCCTGTTGATGTTGTTGTCCCAAGCA
TGCGCGGTAGGAGTCGTAGTCAACCCTCGTCGTTTGGAACTCAACAGAAA
CCTCGGGCTACGTCTCGCACGACGTGGCTAAGGAGGTGTTCCTATCTACG
GTGGTGTTCTATATTTCTACAGAAAGGTGTTGAAAAAATTTCCCGCGCGC
TTGATAGTAGACGGCGGTCTCCTCCCTTCCACCCCTTGGGTCGCTGCCGA
GCAAGCGTAGTATCGGTTCATGTCTGCGGCTGCCTCGGCCTCTTGTTGCT
CGGGCGCCAACATCTCTCCAGTCGAGACTTTTTCCTGGGTTTTCCTGGTG
CCTTTCCGCTCAAGGTTTCGCGTGTCTTCGCCCTCCGTCCTTTTTGTTCG
TTCGTCGTCCGGTCCGAGCAGTCGGGCGTGGACGTGGGTCTTCTGGAAGC
GCAGATGTCCGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11611:37..1649+

>mRNA_H-canaliculatus_F_contig11611.1422.1 ID=mRNA_H-canaliculatus_F_contig11611.1422.1|Name=mRNA_H-canaliculatus_F_contig11611.1422.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=768bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11611:37..1649+ (Hapterophycus canaliculatus Oshoro5f female)
ACCTCCTCAGGTCAACAACAACCAACCACTGCCTCTGCTCCAACAGCAGC
AGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCCTCCCCCCCCG
CGAGGCCCCCCCCCTCCCCAGAACGGCGGATCGGCAGTCGGAGCAGCGGC
GACGGCGACGGCGGCTGCAGCCGGAGCGGCACCCGGGTTGTCGGCAGCGG
CGAACGCCTATCGCCCGATGGACGCGGTCAACACGCAGGCGGTGTCGGTG
GAGGTTATGGCAGCGGGGACGGGAGCGGGGATGCCGCCGGGAGGTATGGG
TATGACGGCGGCGGCGGCGGAGTGGGTGCCCGTGTCAACGTCGACCTCCT
CAGGTCAACAACAACCAACCACTGCCTCTGCTCCAACAGCAGCAGCAACA
GCAGCAGCAGCAGCAGCAGCAACAGCAACAGCCTCCCCCCCCGCGAGGCC
CCCCCCCTCCCCAGAACGGCGGATCGGCAGTCGGAGCAGCGGCGACGGCG
ACGGCGGCTGCAGCCGGAGCGGCACCCGGGTTGTCGGCAGCGGCGAACGC
CTATCGCCCGATGGACGCGGTCAACACGCAGGCGGTGTCGGTGGAGGTTA
TGGCAGCGGGGACGGGAGCGGGGATGCCGCCGGGAGGTATGGGTATGACG
GCGGCGGCGGCGGAGTGGGTGCCCGTGTCAACGTCGTCGGGCGTGGACGT
GGGTCTTCTGGAAGCGCAGATGTCCGGTCGGGCGTGGACGTGGGTCTTCT
GGAAGCGCAGATGTCCGG
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