mRNA_H-canaliculatus_F_contig11609.1415.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11609.1415.1
Unique NamemRNA_H-canaliculatus_F_contig11609.1415.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11609.1415.1 vs. uniprot
Match: D8LBX9_ECTSI (Similar to dedicator of cytokinesis n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBX9_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.170e-16
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 IGAFFRVGFWGALPSELKGLEFVYRVPLMTHVSEFQNRV 117
            IGAFFRVGFWGALP+ELKGLEFVYRVPLMTHVS+FQNRV
Sbjct: 1771 IGAFFRVGFWGALPAELKGLEFVYRVPLMTHVSDFQNRV 1809
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BLAST of mRNA_H-canaliculatus_F_contig11609.1415.1 vs. uniprot
Match: A0A6H5K0M0_9PHAE (DOCKER domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0M0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.830e-15
Identity = 35/39 (89.74%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 IGAFFRVGFWGALPSELKGLEFVYRVPLMTHVSEFQNRV 117
            IGAFFRVGFWGALP+ELKGLEFVYRVPLMT  S+FQNRV
Sbjct:  546 IGAFFRVGFWGALPAELKGLEFVYRVPLMTQFSDFQNRV 584
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BLAST of mRNA_H-canaliculatus_F_contig11609.1415.1 vs. uniprot
Match: A0A5S6QDK1_TRIMR (Uncharacterized protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QDK1_TRIMR)

HSP 1 Score: 47.0 bits (110), Expect = 7.600e-5
Identity = 20/38 (52.63%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 GAFFRVGFWGALPSELKGLEFVYRVPLMTHVSEFQNRV 117
            G +FRVGF+GA+  +L GLEF+YR P +T +SE  +R+
Sbjct: 1784 GTYFRVGFYGAMFGDLDGLEFIYREPAITKLSEISHRL 1821
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11609.1415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LBX9_ECTSI1.170e-1694.87Similar to dedicator of cytokinesis n=1 Tax=Ectoca... [more]
A0A6H5K0M0_9PHAE6.830e-1589.74DOCKER domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A5S6QDK1_TRIMR7.600e-552.63Uncharacterized protein n=1 Tax=Trichuris muris Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11609contigH-canaliculatus_F_contig11609:594..710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue3.9e-14
Seed eggNOG ortholog2880.D8LBX9
KEGG koko:K21853
EggNOG free text desc.memory T cell proliferation
EggNOG OGsKOG1997@1,KOG1997@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSimilar to dedicator of cytokinesis
Ec32 orthologEc-20_003690.5
Exons1
Model size117
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.404196-CDS-H-canaliculatus_F_contig11609:593..7101622928852.404196-CDS-H-canaliculatus_F_contig11609:593..710Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11609 594..710 +
1696845588.979937-CDS-H-canaliculatus_F_contig11609:593..7101696845588.979937-CDS-H-canaliculatus_F_contig11609:593..710Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11609 594..710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11609.1415.1prot_H-canaliculatus_F_contig11609.1415.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11609 594..710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11609.1415.1

>prot_H-canaliculatus_F_contig11609.1415.1 ID=prot_H-canaliculatus_F_contig11609.1415.1|Name=mRNA_H-canaliculatus_F_contig11609.1415.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=39bp
IGAFFRVGFWGALPSELKGLEFVYRVPLMTHVSEFQNRV
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mRNA from alignment at H-canaliculatus_F_contig11609:594..710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11609.1415.1 ID=mRNA_H-canaliculatus_F_contig11609.1415.1|Name=mRNA_H-canaliculatus_F_contig11609.1415.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=117bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11609:594..710+ (Hapterophycus canaliculatus Oshoro5f female)
ATCGGGGCCTTCTTCCGAGTCGGCTTCTGGGGCGCGCTGCCGTCGGAGCT
GAAGGGCCTTGAGTTCGTGTACAGGGTGCCGCTGATGACGCATGTTTCCG
AGTTCCAGAACAGGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11609:594..710+

>mRNA_H-canaliculatus_F_contig11609.1415.1 ID=mRNA_H-canaliculatus_F_contig11609.1415.1|Name=mRNA_H-canaliculatus_F_contig11609.1415.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=234bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11609:594..710+ (Hapterophycus canaliculatus Oshoro5f female)
ATCGGGGCCTTCTTCCGAGTCGGCTTCTGGGGCGCGCTGCCGTCGGAGCT
GAAGGGCCTTGAGTTCGTGTACAGGGTGCCGCTGATGACGCATGTTTCCG
AGTTCCAGAACAGGGTGATCGGGGCCTTCTTCCGAGTCGGCTTCTGGGGC
GCGCTGCCGTCGGAGCTGAAGGGCCTTGAGTTCGTGTACAGGGTGCCGCT
GATGACGCATGTTTCCGAGTTCCAGAACAGGGTG
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