mRNA_H-canaliculatus_F_contig11607.1413.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11607.1413.1
Unique NamemRNA_H-canaliculatus_F_contig11607.1413.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11607.1413.1 vs. uniprot
Match: A0A6H5K059_9PHAE (G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K059_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.250e-27
Identity = 56/58 (96.55%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 FPGHMVKATKVIREKLKQVDMVFEVRDARIPFTSANDDLDKIVGPSKARLIVLNKVRA 174
            FPGHMVKATKVIREKLKQVDMVFEVRDARIPFTSAN DLDKIVGPSKARLIVLNK RA
Sbjct:   74 FPGHMVKATKVIREKLKQVDMVFEVRDARIPFTSANQDLDKIVGPSKARLIVLNKARA 131
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BLAST of mRNA_H-canaliculatus_F_contig11607.1413.1 vs. uniprot
Match: UPI000FD984F0 (ribosome biogenesis GTPase YlqF n=1 Tax=Halobacteriovorax sp. HLS TaxID=2234000 RepID=UPI000FD984F0)

HSP 1 Score: 77.0 bits (188), Expect = 2.260e-15
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 1 
Query:    1 FPGHMVKATKVIREKLKQVDMVFEVRDARIPFTSANDDLDKIVGPSKARLIVLNKVRAS 177
            FPGHM KATK +  KLK VD+V E+RDARIP  S N+DL K++G +K+RLIVLNK+  S
Sbjct:   28 FPGHMAKATKQVSNKLKMVDIVLEIRDARIPLLSGNEDLKKLIG-TKSRLIVLNKMNLS 85
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BLAST of mRNA_H-canaliculatus_F_contig11607.1413.1 vs. uniprot
Match: A0A2G8HQV5_9PROT (Ribosome biogenesis GTPase A n=1 Tax=Halobacteriovorax sp. JY17 TaxID=2014617 RepID=A0A2G8HQV5_9PROT)

HSP 1 Score: 74.7 bits (182), Expect = 1.640e-14
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 1 
Query:    1 FPGHMVKATKVIREKLKQVDMVFEVRDARIPFTSANDDLDKIVGPSKARLIVLNKVRAS 177
            FPGHM KA K + +KLK VD++ E+RDARIP  S N+DL K+VG +K RL+VLNKV  S
Sbjct:   28 FPGHMAKAMKQVGDKLKMVDIILELRDARIPLLSGNEDLKKLVG-NKCRLVVLNKVNLS 85
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BLAST of mRNA_H-canaliculatus_F_contig11607.1413.1 vs. uniprot
Match: E1WXC8_HALMS (Ribosome biogenesis GTPase A n=2 Tax=Halobacteriovorax marinus TaxID=97084 RepID=E1WXC8_HALMS)

HSP 1 Score: 74.7 bits (182), Expect = 1.910e-14
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 FPGHMVKATKVIREKLKQVDMVFEVRDARIPFTSANDDLDKIVGPSKARLIVLNKV 168
            FPGHM KA K + EKLK VD+V E+RDARIP  S N+DL K++G +K RLIVLNKV
Sbjct:   47 FPGHMAKAMKQVGEKLKMVDIVLELRDARIPLLSGNEDLKKVLG-NKCRLIVLNKV 101
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BLAST of mRNA_H-canaliculatus_F_contig11607.1413.1 vs. uniprot
Match: A0A1L8I540_9BACI (Ribosome biogenesis GTPase A n=1 Tax=Bacillaceae bacterium G1 TaxID=1836462 RepID=A0A1L8I540_9BACI)

HSP 1 Score: 74.3 bits (181), Expect = 2.140e-14
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 FPGHMVKATKVIREKLKQVDMVFEVRDARIPFTSANDDLDKIVGPSKARLIVLNK 165
            +PGHM KAT++IRE+LKQVD+VFE+ DARIP +S N  +D I+GP K RL++ NK
Sbjct:    7 YPGHMAKATRLIRERLKQVDVVFELLDARIPSSSRNPQIDAIIGP-KPRLVIFNK 60
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BLAST of mRNA_H-canaliculatus_F_contig11607.1413.1 vs. uniprot
Match: A0A7X6YBQ8_9FIRM (Ribosome biogenesis GTPase A n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A7X6YBQ8_9FIRM)

HSP 1 Score: 70.9 bits (172), Expect = 3.620e-13
Identity = 34/55 (61.82%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 FPGHMVKATKVIREKLKQVDMVFEVRDARIPFTSANDDLDKIVGPSKARLIVLNK 165
            +PGHM KA +++RE+LK VD+V E+RDARIP +S N DL+K++G  K RLIVLNK
Sbjct:    6 YPGHMAKAKRLLREQLKLVDVVLEIRDARIPDSSGNPDLEKLLGTRK-RLIVLNK 59
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BLAST of mRNA_H-canaliculatus_F_contig11607.1413.1 vs. uniprot
Match: UPI00195A05F0 (ribosome biogenesis GTPase YlqF n=1 Tax=Clostridium sardiniense TaxID=29369 RepID=UPI00195A05F0)

HSP 1 Score: 70.1 bits (170), Expect = 6.810e-13
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 FPGHMVKATKVIREKLKQVDMVFEVRDARIPFTSANDDLDKIVGPSKARLIVLNK 165
            FPGHM K  + I+E LK VD V E+RDARIP +SAN D+DK+VG  K RLI+LNK
Sbjct:    6 FPGHMKKTQREIKENLKLVDAVIEIRDARIPASSANPDIDKLVG-DKPRLILLNK 59
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BLAST of mRNA_H-canaliculatus_F_contig11607.1413.1 vs. uniprot
Match: A0A343JBM8_9CLOT (Ribosome biogenesis GTPase A n=1 Tax=Clostridium isatidis TaxID=182773 RepID=A0A343JBM8_9CLOT)

HSP 1 Score: 70.1 bits (170), Expect = 6.880e-13
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 FPGHMVKATKVIREKLKQVDMVFEVRDARIPFTSANDDLDKIVGPSKARLIVLNK 165
            FPGHM K  + I+E LK VD V E+RDARIP +SAN D+DKI G +KAR+I+LNK
Sbjct:    7 FPGHMKKTQREIKENLKVVDAVIEIRDARIPRSSANPDIDKICG-NKARIILLNK 60
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BLAST of mRNA_H-canaliculatus_F_contig11607.1413.1 vs. uniprot
Match: A0A847P9T7_9FIRM (Ribosome biogenesis GTPase A n=1 Tax=Erysipelotrichia bacterium TaxID=2184014 RepID=A0A847P9T7_9FIRM)

HSP 1 Score: 70.1 bits (170), Expect = 7.370e-13
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 FPGHMVKATKVIREKLKQVDMVFEVRDARIPFTSANDDLDKIVGPSKARLIVLNK 165
            +PGHM KA + +REK+K VDMV E+RDARIP +S N  LD+I+G SK RLIVL+K
Sbjct:   10 YPGHMTKAKREMREKIKLVDMVIEIRDARIPLSSINPLLDEIIG-SKPRLIVLSK 63
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BLAST of mRNA_H-canaliculatus_F_contig11607.1413.1 vs. uniprot
Match: B2KZF2_PICAB (Short integuments 2 (Fragment) n=1 Tax=Picea abies TaxID=3329 RepID=B2KZF2_PICAB)

HSP 1 Score: 67.0 bits (162), Expect = 7.690e-13
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 FPGHMVKATKVIREKLKQVDMVFEVRDARIPFTSANDDLDKIVGPSKARLIVLNK 165
            FPGHM  AT+ IRE+LK  D+V EVRDARIP +SAN D   I+   K R+I+LNK
Sbjct:   23 FPGHMAAATRAIRERLKLADLVVEVRDARIPLSSANGDFQDILSRKK-RIIILNK 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11607.1413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K059_9PHAE1.250e-2796.55G domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
UPI000FD984F02.260e-1562.71ribosome biogenesis GTPase YlqF n=1 Tax=Halobacter... [more]
A0A2G8HQV5_9PROT1.640e-1461.02Ribosome biogenesis GTPase A n=1 Tax=Halobacteriov... [more]
E1WXC8_HALMS1.910e-1466.07Ribosome biogenesis GTPase A n=2 Tax=Halobacteriov... [more]
A0A1L8I540_9BACI2.140e-1461.82Ribosome biogenesis GTPase A n=1 Tax=Bacillaceae b... [more]
A0A7X6YBQ8_9FIRM3.620e-1361.82Ribosome biogenesis GTPase A n=1 Tax=Clostridia ba... [more]
UPI00195A05F06.810e-1363.64ribosome biogenesis GTPase YlqF n=1 Tax=Clostridiu... [more]
A0A343JBM8_9CLOT6.880e-1363.64Ribosome biogenesis GTPase A n=1 Tax=Clostridium i... [more]
A0A847P9T7_9FIRM7.370e-1363.64Ribosome biogenesis GTPase A n=1 Tax=Erysipelotric... [more]
B2KZF2_PICAB7.690e-1360.00Short integuments 2 (Fragment) n=1 Tax=Picea abies... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11607contigH-canaliculatus_F_contig11607:160..1282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue2.8e-18
Seed eggNOG ortholog2880.D8LR15
Preferred nameMTG1
KEGG koko:K19828
GOsGO:0000313,GO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005840,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019222,GO:0019538,GO:0019866,GO:0022613,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032268,GO:0032543,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0042254,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043576,GO:0043603,GO:0043604,GO:0044057,GO:0044065,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051239,GO:0051246,GO:0060255,GO:0065007,GO:0070013,GO:0070129,GO:0071704,GO:0071840,GO:0080090,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
EggNOG free text desc.GTP binding
EggNOG OGsCOG1161@1,KOG2485@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size177
Cds size165
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11607.1413.1prot_H-canaliculatus_F_contig11607.1413.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11607 160..1270 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.239567-CDS-H-canaliculatus_F_contig11607:159..2821622928852.239567-CDS-H-canaliculatus_F_contig11607:159..282Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11607 160..282 -
1696845588.8602493-CDS-H-canaliculatus_F_contig11607:159..2821696845588.8602493-CDS-H-canaliculatus_F_contig11607:159..282Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11607 160..282 -
1622928852.2505288-CDS-H-canaliculatus_F_contig11607:1228..12701622928852.2505288-CDS-H-canaliculatus_F_contig11607:1228..1270Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11607 1229..1270 -
1696845588.8778634-CDS-H-canaliculatus_F_contig11607:1228..12701696845588.8778634-CDS-H-canaliculatus_F_contig11607:1228..1270Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11607 1229..1270 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928852.2630227-UTR-H-canaliculatus_F_contig11607:1270..12821622928852.2630227-UTR-H-canaliculatus_F_contig11607:1270..1282Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11607 1271..1282 -
1696845588.8897533-UTR-H-canaliculatus_F_contig11607:1270..12821696845588.8897533-UTR-H-canaliculatus_F_contig11607:1270..1282Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11607 1271..1282 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11607.1413.1

>prot_H-canaliculatus_F_contig11607.1413.1 ID=prot_H-canaliculatus_F_contig11607.1413.1|Name=mRNA_H-canaliculatus_F_contig11607.1413.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=55bp
MVKATKVIREKLKQVDMVFEVRDARIPFTSANDDLDKIVGPSKARLIVLN
KVRAS
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mRNA from alignment at H-canaliculatus_F_contig11607:160..1282-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11607.1413.1 ID=mRNA_H-canaliculatus_F_contig11607.1413.1|Name=mRNA_H-canaliculatus_F_contig11607.1413.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1123bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11607:160..1282- (Hapterophycus canaliculatus Oshoro5f female)
TTTCCGGGTCACATGGTGAAAGCTACCAAGGTCATCCGAGAGAAGCTCAA
GCAGGTGCTTTTCTACTGAAGGCCGGTGTCAACTCGAGCTCGAGGAAAGT
CCGGGTTGACACCTAGTCACGGCCGCAGCAGATCCAGCTGTTCGTCGATG
GCGCTTTCCATAACCAGAATATTGGAGCTGCCGCCACGGGTTTTATGCCC
CTTCCAAAGTCTACGGCAGCTCGGACATTGCTTGGGGGTTCTTGGTGTGC
TCGGTGACAGGCATGGATCCGTCGATCAAACAGCTCGCACGGTTTTGTAC
GCATCATGGACGGTGTAGACACGAGGAAAAACATGACCCACGGAAACTTG
AGAATGAGCGTAAGCGTCTGTCGGAAAAAACTTTCTTATCTACCGTTTTA
CCCTGTTCCCATCCGCCTGTTGTTGGTGCCTTATGTGCCGAATCCCGGGG
ACTTCCGAAGAGCCGAACGTCCCATCGGTAGCGCTAGGGCGCTCGGCGGC
GAGACGCATTCGTCCGATCCGAGGTTTCCTCTCCGCAAATTTGGAACCTG
GCATCCGATGACGTCCACAAGTCCCTGCTGGTCACCCCGTGGGGGAACCT
CTTCCATGGCCGTTGGCTAGTTACCCACAACGATTTGAAAGGCCGGCGAA
ACATGAAAACCCACCAAAGCTTGGAATCACGCGAGATGTGCGGGTGCGAA
AGCCATGCCTGCAAGAGTGCTTTTTTTTTTCCCCTCTGTAATGTCCCACC
TCGTCTTGTCTCCCCAGACGGGCAAAGGGTTCTCTTCACCTGTGCACCAG
GAGAGGGGGTTCAAGCCAAAGTGCAGTCGTGAGATCACTGCAGCGAGCAC
GGTTCGGGATCGAAGACTAGCGCCTGTTTTCTCCGTCCCGTGTGTCCTCC
GCCTGTTGCTTGTTCCGCGGGGCGTGCGTTTCACCATATGTATATATATA
TATATTCTCCTTCTGCACATGTTTTGTACTCTTGGGGGGCGGATGTGCAG
GTAGACATGGTGTTCGAGGTGCGCGACGCCAGAATCCCCTTCACCTCCGC
CAACGACGACTTGGACAAGATCGTCGGACCCAGCAAGGCGCGATTGATCG
TCCTCAATAAGGTGCGTGCGTCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11607:160..1282-

>mRNA_H-canaliculatus_F_contig11607.1413.1 ID=mRNA_H-canaliculatus_F_contig11607.1413.1|Name=mRNA_H-canaliculatus_F_contig11607.1413.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=330bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11607:160..1282- (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGAAAGCTACCAAGGTCATCCGAGAGAAGCTCAAGCAGATGGTGAA
AGCTACCAAGGTCATCCGAGAGAAGCTCAAGCAGGTAGACATGGTGTTCG
AGGTGCGCGACGCCAGAATCCCCTTCACCTCCGCCAACGACGACTTGGAC
AAGATCGTCGGACCCAGCAAGGCGCGATTGATCGTCCTCAATAAGGTGCG
TGCGTCGGTAGACATGGTGTTCGAGGTGCGCGACGCCAGAATCCCCTTCA
CCTCCGCCAACGACGACTTGGACAAGATCGTCGGACCCAGCAAGGCGCGA
TTGATCGTCCTCAATAAGGTGCGTGCGTCG
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