mRNA_H-canaliculatus_F_contig11489.1314.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11489.1314.1
Unique NamemRNA_H-canaliculatus_F_contig11489.1314.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11489.1314.1 vs. uniprot
Match: D8LEG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEG2_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.030e-49
Identity = 111/150 (74.00%), Postives = 123/150 (82.00%), Query Frame = 3 
Query:  198 RRASAAAQDATE-------AIELCEKKRELEVGAATREAASRERAVEEQLKRLPEHQQQLLQAEKGRVVRWEERLAAESASLDRREEAHKIDMEACRADARRAEVEARARIEEEASRERSSLKDARSALERERGELLRRVARAEAAGQTS 626
            R A++AAQD  +         ELCE+KRELEV AATR A +RERA EEQLKRLPEHQQQLLQAEK RVVRWEERLAAE+ASL RREEAHKIDMEACRA  RR E E RAR+EE+ASRERS+L +ARSA ERERGELLRRVA AE+AGQ +
Sbjct:  168 RSAASAAQDRADQCQKEATVAELCERKRELEVDAATRAAEARERAAEEQLKRLPEHQQQLLQAEKDRVVRWEERLAAEAASLQRREEAHKIDMEACRAQVRRMEAETRARVEEDASRERSTLTNARSAFERERGELLRRVAAAESAGQAA 317
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BLAST of mRNA_H-canaliculatus_F_contig11489.1314.1 vs. uniprot
Match: A0A6H5JRQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRQ9_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 5.280e-46
Identity = 101/128 (78.91%), Postives = 113/128 (88.28%), Query Frame = 3 
Query:  243 LCEKKRELEVGAATREAASRERAVEEQLKRLPEHQQQLLQAEKGRVVRWEERLAAESASLDRREEAHKIDMEACRADARRAEVEARARIEEEASRERSSLKDARSALERERGELLRRVARAEAAGQTS 626
            LCE+KRELEV AATR A +RERA EEQ+KRLPEHQQQLLQAE+ RVVRWEERLAAE+ASL RREEAHKIDMEACRA  RR E E RAR+EE+ASRERS+L +A+SA ERERGELLRRVA AE+AGQ +
Sbjct:  370 LCERKRELEVDAATRVAEARERAAEEQMKRLPEHQQQLLQAERDRVVRWEERLAAEAASLQRREEAHKIDMEACRAQIRRMEAETRARVEEDASRERSTLTNAKSAFERERGELLRRVAAAESAGQAA 497
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11489.1314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEG2_ECTSI1.030e-4974.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRQ9_9PHAE5.280e-4678.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11489contigH-canaliculatus_F_contig11489:252..3831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size920
Cds size468
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11489.1314.1prot_H-canaliculatus_F_contig11489.1314.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11489 2068..3831 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928835.790381-UTR-H-canaliculatus_F_contig11489:251..4431622928835.790381-UTR-H-canaliculatus_F_contig11489:251..443Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11489 252..443 +
1696845582.7274406-UTR-H-canaliculatus_F_contig11489:251..4431696845582.7274406-UTR-H-canaliculatus_F_contig11489:251..443Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11489 252..443 +
1622928835.810785-UTR-H-canaliculatus_F_contig11489:930..9801622928835.810785-UTR-H-canaliculatus_F_contig11489:930..980Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11489 931..980 +
1696845582.7370224-UTR-H-canaliculatus_F_contig11489:930..9801696845582.7370224-UTR-H-canaliculatus_F_contig11489:930..980Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11489 931..980 +
1622928835.8251393-UTR-H-canaliculatus_F_contig11489:1180..13001622928835.8251393-UTR-H-canaliculatus_F_contig11489:1180..1300Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11489 1181..1300 +
1696845582.7465625-UTR-H-canaliculatus_F_contig11489:1180..13001696845582.7465625-UTR-H-canaliculatus_F_contig11489:1180..1300Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11489 1181..1300 +
1622928835.8410892-UTR-H-canaliculatus_F_contig11489:1624..17081622928835.8410892-UTR-H-canaliculatus_F_contig11489:1624..1708Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11489 1625..1708 +
1696845582.75474-UTR-H-canaliculatus_F_contig11489:1624..17081696845582.75474-UTR-H-canaliculatus_F_contig11489:1624..1708Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11489 1625..1708 +
1622928835.8581355-UTR-H-canaliculatus_F_contig11489:2061..20671622928835.8581355-UTR-H-canaliculatus_F_contig11489:2061..2067Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11489 2062..2067 +
1696845582.7636108-UTR-H-canaliculatus_F_contig11489:2061..20671696845582.7636108-UTR-H-canaliculatus_F_contig11489:2061..2067Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11489 2062..2067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928835.8802733-CDS-H-canaliculatus_F_contig11489:2067..22501622928835.8802733-CDS-H-canaliculatus_F_contig11489:2067..2250Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11489 2068..2250 +
1696845582.773846-CDS-H-canaliculatus_F_contig11489:2067..22501696845582.773846-CDS-H-canaliculatus_F_contig11489:2067..2250Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11489 2068..2250 +
1622928835.9038167-CDS-H-canaliculatus_F_contig11489:2962..31101622928835.9038167-CDS-H-canaliculatus_F_contig11489:2962..3110Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11489 2963..3110 +
1696845582.7917528-CDS-H-canaliculatus_F_contig11489:2962..31101696845582.7917528-CDS-H-canaliculatus_F_contig11489:2962..3110Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11489 2963..3110 +
1622928835.9201627-CDS-H-canaliculatus_F_contig11489:3694..38311622928835.9201627-CDS-H-canaliculatus_F_contig11489:3694..3831Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11489 3695..3831 +
1696845582.8025482-CDS-H-canaliculatus_F_contig11489:3694..38311696845582.8025482-CDS-H-canaliculatus_F_contig11489:3694..3831Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11489 3695..3831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11489.1314.1

>prot_H-canaliculatus_F_contig11489.1314.1 ID=prot_H-canaliculatus_F_contig11489.1314.1|Name=mRNA_H-canaliculatus_F_contig11489.1314.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=156bp
MEACRADARRAEVEARARIEEEASRERSSLKDARSALERERGELLRRVAR
AEAAGQTSTAEAASQKREANEMRQRFEAEKSALDLRTSMLAPHLMALEEG
RATLEGLRREAAQGAQRVKEKVCRAVEMEAGVVEREAAVELKWKEITTAR
RALKQV
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mRNA from alignment at H-canaliculatus_F_contig11489:252..3831+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11489.1314.1 ID=mRNA_H-canaliculatus_F_contig11489.1314.1|Name=mRNA_H-canaliculatus_F_contig11489.1314.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3580bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11489:252..3831+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGCGTTACGCGCGAGATTACAGGATGAAGCGACGGAGCTCCGGCACAC
AAGGAGCATGCTTGAAGCGGCGCGATCGAGGGCGTCGGCAGCCGAGGAGC
GCGCCGACCAATTCCAAAAGGAAGCAATCGCGGCTAAGGCATGATATGCG
GGAGGGAATGCGCAGCTAATACTTGCAAAGCTCAACCGGAATGTGAAAAC
GGAGGTTCCAAACGTATTGCACAGACCCTTCCACCTGTGGGTGGCGACTA
GGGTGTGGTGAGACAGGGCGAAAAGGGGTGGACGAAGCGGTATTCCACCT
CTAGACCGAAGATCGATCGACGCGGAGAAGCTTCTGGGGACGTGCACTAG
GTCGATGTCCCCGCGAGCTTTCAACCCTCCTACCGCAGCGAGCAGATTCG
CCTCAACGACGACGATGAAGTTGTGTGCATCACGTGTTGGCTCTTTCTCG
GCGAGGGGTACGGAAATGGGCCCGGGGTCGTGGATTCCGCGCGCTCGCTT
CTATCTCCTCCCTTCTTTCGGCCGCACCGACAAAACTTCGGACTTTCCTT
CCCCCATTCAAGACGTCGCCAGTTCTCTTCACCTGCCGAAAATGTGTGCG
TGCGGTTACTGTGGAAGTAAGGTAACCGCAGAGGAGCTTCTGGTCAAGAT
GGTCGATGTACGGGCGGACGCGGACGAAGAGAGGAGGCGAGCTTCTGCCG
CGGCTCAAGATGCGACAGAAGCAATCGAGGTGGGGCACGCTGCTACTACT
GCTCCCGTCAGTCTCTCATCGACGACCTTACCTGGGTCGTCGGCGTCCTC
GTCATCGTTCGTGTTGTTTCTTGTCTCCATCGTCACATGCCATGTGCAAG
TACCCGAAAAAATATTTGACCCGGCGCCGCCGATGCTGCTCTCTGTCCTG
CTTTGGTCGTGACTCTCGGATTTGGGAAGTTGTGCGAGAAAAAGCGAGAG
CTGGAAGTTGGTGCCGCCACTAGAGAGGCGGCGTCGCGGGAGAGGGCGGT
AGAGGAACAACTGAAACGCTTGCCAGAGCACCAGCAGCAGCTTCTTCAGG
TGGGCTTTGCGAGCTCGTTCCCCGGCAGGGTGGTCTTCGGCACCCCTGCA
TGTTCTTAGGGTCCCTACAACGAGAGTGAACCCATTTTTCGTTTCGTGGA
TCCCTCAAGCACCCTGCTGTGATTATGCAAGAAGGCAATCCTCCATGGAC
AATGATGAGAAGTCGTCCTGGAGTTTGGAACGATCGGGTTGCCTGGTGGG
GGGTAAAATCGCTTCCAACCTACGTGAACGCAGCACTAGTCCCCTCGGCG
ACAATAAAAACGACAACAACAACAACAACACAACAGCTCAAATTGTGCAC
GTACTTGGCTCCGACTACCCCAGGCAGAAAAGGGCCGCGTGGTGAGGTGG
GAGGAGCGCCTGGCGGCGGAGTCGGCGAGTCTTGACCGCAGGGAGGAGGC
GCACAAGGTGAATCGACGGAGAACCGTAAGGTTCTGCATTCCGCGGCGAT
GTCAGTCTTTTTAGAGAGCGGATGGCATTGGCGACTTTGATTTTGGCGTC
AAAAGATATTGCCGAGCAGAATTGGCGCTGTAAGAAAAAACAGATTGCAC
GATATTTGCTCTCTGTCTGAAGCCGGGATCGTTCTCATTACTGCTGCTAG
CTGGGTTTGCGAAACACCCGCGCGCTGCGCCCCAGCTTTGCAGGGGGGCA
GACAAGTCATGCATACATCAGCCCTACACTTTACCCGCGTGCAAGACGGC
GAATGTGATACCACATGCCCTGGCGAACGGCGTGCGCTGTTGGTCACAAA
TTCGACCCAGATCGATATGGAGGCCTGTAGGGCAGACGCCAGAAGGGCAG
AGGTGGAAGCCCGAGCCCGCATAGAGGAGGAGGCTTCTCGAGAGCGATCT
TCTCTCAAGGACGCCCGGTCGGCGTTAGAGAGGGAAAGGGGAGAGCTCTT
GCGGCGTGTTGCGAGGGCCGAGGCCGCCGGCCAGACCTCGACAGCGGAGG
TTCGTTTTGCGGAATGCCTCCCTGACTTTTATTCGCTACGCGATCACGTA
CGAAGGCCGAACACTTTCTGGTGTTCGCTGCAGCGTCGAAGCACGGCCTA
CGGTTAGCATTTCAGTGCGAGAGCCACCAGAGTCAGATATCATTTTGTGC
GATAGAAGGGATCTGTCCGCAGTGTATCATGAACCCGGGATCCATCCTAC
CTTTCGAGTTCGTCCCCCTTTACATTTGCCATGCGTACGGATGGGATGCT
GCTTGCGGCAAGTAATTATCGGTCAGCGAGATCGAACCAATGTGCGATGT
CATAAACAACGTCGACACCTGGAACAGCAAGTCTTGCATAAAAAGAGGGA
AAATGAAATCATGCATTTCTTGGTTCAGCGCATAGCATGAAAAGGAGAAA
ACTCTCTCAACCCACAAAATACGATGTTTCTCATACCTGAGCTTGGCAAA
ACGATCTGGTTAATCCCATATTATTCCGGCGAGATCGCAGGGACTACAAG
AATACAAAAAATGCCGCTGTGCTTCCGAGGCGTATCGTGAGAGTTGAATC
GTACTTAAAAGGATGAATACGGCTGGCTGCTCCCGTTCGGATGGGGGGAC
ACCGCTTGTCGTCGAAAGCCTTCCGATCAAAAAAGTTGTCGGGATGGATA
GCGTGATCCTGACCGAACAATCGCATAGTTATTTTGCGTTGTGGACATGC
TTGCTCTCAAGGCGGCTTCACAAAAGAGAGAGGCAAACGAAATGCGTCAA
AGGTTCGAGGCCGAAAAGAGCGCGCTGGACCTCAGGACCTCGATGCTCGC
GCCTCACCTCATGGCCCTGGAGGAAGGGCGAGCGACGCTCGAAGGGTTAC
GACGAGAGGGTGCGTTCCCATCACCCGACCTACCTACACAGCAGCACCAT
TCCGCTGATCCCGCCCAGAACTTGAGAAATACTCTCCTTGCTTGGTCGCG
TGGTGTAACCTAACCCCGACCCTGTTCAGCGGGTGACATTTCGAGACGAA
TAGTGGAGTTGGCGGCCTGCTGCCGGGTTGGCAGATACGGTTTCCATGCG
GTAGTGGTAAGGTACATTACGTTGTACATCGTTCGGTTTGCACCCTTGCC
TTCCCTGCGACCCCGCGTGACGTGACAAGTTCTCTCGTTTTGTGCTCCTG
GACTTATCGCTGAAAGCTTTCAGAGATCGTCGGGAGAGGCACACGTCTCA
AAGACTGGATTCGAGAGACATCTTTGGGAGTCCGTCAAAGAAAGAAGAAG
CAGGCAACGGGTGCCCTCGAGATAGTCGCAGGCGTTATTGACAGATACTA
ACCCCGGTTCCCCTTCCCTCGCCTCCCATCCGCCTCCACCCCGTGGTCCG
AAACGCCTATCCCCTTTCATAATTTTGTATCCTAGCGAGCTTTCCTATTT
TCCGCCGGGTATTCCTGCTTGACTCGCTTTCGATCCCCCCCAGCGGCGCA
AGGAGCACAACGAGTGAAGGAGAAAGTATGCCGCGCCGTCGAGATGGAGG
CGGGAGTTGTAGAGAGAGAGGCCGCGGTGGAGTTGAAGTGGAAGGAGATC
ACGACGGCTCGGCGAGCGTTGAAGCAGGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11489:252..3831+

>mRNA_H-canaliculatus_F_contig11489.1314.1 ID=mRNA_H-canaliculatus_F_contig11489.1314.1|Name=mRNA_H-canaliculatus_F_contig11489.1314.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=936bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11489:252..3831+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGCCTGTAGGGCAGACGCCAGAAGGGCAGAGGTGGAAGCCCGAGC
CCGCATAGAGGAGGAGGCTTCTCGAGAGCGATCTTCTCTCAAGGACGCCC
GGTCGGCGTTAGAGAGGGAAAGGGGAGAGCTCTTGCGGCGTGTTGCGAGG
GCCGAGGCCGCCGGCCAGACCTCGACAGCGGAGATGGAGGCCTGTAGGGC
AGACGCCAGAAGGGCAGAGGTGGAAGCCCGAGCCCGCATAGAGGAGGAGG
CTTCTCGAGAGCGATCTTCTCTCAAGGACGCCCGGTCGGCGTTAGAGAGG
GAAAGGGGAGAGCTCTTGCGGCGTGTTGCGAGGGCCGAGGCCGCCGGCCA
GACCTCGACAGCGGAGGCGGCTTCACAAAAGAGAGAGGCAAACGAAATGC
GTCAAAGGTTCGAGGCCGAAAAGAGCGCGCTGGACCTCAGGACCTCGATG
CTCGCGCCTCACCTCATGGCCCTGGAGGAAGGGCGAGCGACGCTCGAAGG
GTTACGACGAGAGGGCGGCTTCACAAAAGAGAGAGGCAAACGAAATGCGT
CAAAGGTTCGAGGCCGAAAAGAGCGCGCTGGACCTCAGGACCTCGATGCT
CGCGCCTCACCTCATGGCCCTGGAGGAAGGGCGAGCGACGCTCGAAGGGT
TACGACGAGAGGCGGCGCAAGGAGCACAACGAGTGAAGGAGAAAGTATGC
CGCGCCGTCGAGATGGAGGCGGGAGTTGTAGAGAGAGAGGCCGCGGTGGA
GTTGAAGTGGAAGGAGATCACGACGGCTCGGCGAGCGTTGAAGCAGGTAC
GGCGCAAGGAGCACAACGAGTGAAGGAGAAAGTATGCCGCGCCGTCGAGA
TGGAGGCGGGAGTTGTAGAGAGAGAGGCCGCGGTGGAGTTGAAGTGGAAG
GAGATCACGACGGCTCGGCGAGCGTTGAAGCAGGTA
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