mRNA_H-canaliculatus_F_contig10.16.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10.16.1
Unique NamemRNA_H-canaliculatus_F_contig10.16.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10.16.1 vs. uniprot
Match: D7G540_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G540_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 5.200e-5
Identity = 32/61 (52.46%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:   52 VDDEADRAVLNHIADMMVDLAAPSTPATAGTSTAMGKVD-GGGGDKLGDKAADHVMSLAGE 231
            VDD ADRA+LN IADM+VDLAA    +T  +  A G V  GGGG  L    AD  + L GE
Sbjct:  124 VDDSADRAILNQIADMVVDLAALVPQSTTASPAAPGDVSVGGGGTTLPQPGADQTLLLGGE 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G540_ECTSI5.200e-552.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10contigH-canaliculatus_F_contig10:38030..39557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size467
Cds size465
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928625.3075554-CDS-H-canaliculatus_F_contig10:38029..380801622928625.3075554-CDS-H-canaliculatus_F_contig10:38029..38080Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10 38030..38080 +
1696845498.7777464-CDS-H-canaliculatus_F_contig10:38029..380801696845498.7777464-CDS-H-canaliculatus_F_contig10:38029..38080Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10 38030..38080 +
1622928625.3201897-CDS-H-canaliculatus_F_contig10:39143..395571622928625.3201897-CDS-H-canaliculatus_F_contig10:39143..39557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10 39144..39557 +
1696845498.7880988-CDS-H-canaliculatus_F_contig10:39143..395571696845498.7880988-CDS-H-canaliculatus_F_contig10:39143..39557Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10 39144..39557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10.16.1prot_H-canaliculatus_F_contig10.16.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10 38030..39557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10.16.1

>prot_H-canaliculatus_F_contig10.16.1 ID=prot_H-canaliculatus_F_contig10.16.1|Name=mRNA_H-canaliculatus_F_contig10.16.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=155bp
TLLPLDAPPSRDHVQRKVDDEADRAVLNHIADMMVDLAAPSTPATAGTST
AMGKVDGGGGDKLGDKAADHVMSLAGESSLRKEVSIGNRDLPTSQISSQR
DTDDDDEDADGGANASDTDDSGSSDTGDSPEEAGEKALTGHHGQATSNDE
RYLV*
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mRNA from alignment at H-canaliculatus_F_contig10:38030..39557+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10.16.1 ID=mRNA_H-canaliculatus_F_contig10.16.1|Name=mRNA_H-canaliculatus_F_contig10.16.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1528bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:38030..39557+ (Hapterophycus canaliculatus Oshoro5f female)
ACACTTTTGCCATTGGATGCCCCACCGAGCCGCGACCATGTACAGCGGAA
GGTACGATGGACACGTCAAATCCAAAATCTCAAGAAAAGCAAAGAAACAC
CCACGACCCAGGGGCATACTCTCGACGGGCGACTTGGGACGAGCAGGTCT
GACTTTCGTTTGACGTTGGAACACAGGCCCTGGAGCCTAAAGTCTAAAAT
TGGAATCAGCGCTTTCAGAACGTTACAGAGGACCCGTCTTCTTTTAGTCT
CGGGCTTTTTGAGGTCATGCCCTTCACGTCTTTCTTGTAAAAGTGTCGTT
GGCTCAATAGGTAGTCATCGCGCTTCCTCCTTTGCACAAATCGGGTTATC
CGCAAGACAGTCGTTCGTCCACGTGAACCGATAGATCGTTTGCGGACTTT
GTGGCCAAATCATTAGTCCGAACAAATTGGAGCTGATGATGTTCTTCCGC
ATATATTTTGTCGTTGTTGTTTTTTCCATTTACCCCGAAGAGAACTTGGG
TGGTGGCACCGGAAGAAGAGGACGGAAACGCCCTGCTGTGTTGGTCCCAC
ATCCTGGACCGTGTCTGATTGACCTATGGACGGGTCAAACTGTTGCAAGG
AATCCAGTAGAAGCCAGCCCATCTTCGTCATTAGATAGGGTCGTCAAGGT
ACAACATGTTTTTGCTGATCGCAGCGTGAGGTTTTGCGCGCTCAATTGTC
ATCAGTAATACGCTGGTTCTGGGCAGTTACTGATCCACAGAGTCCGAGCC
ATCCCAGTGGCACACAACGACCAGTTTTTCCTATCCTTCTCCCGGTGAGA
CTTCCCCAGCCAAATAACCTTGCTCGAAGATAGTGCAAGTTGAAATACGA
CCGACCGCATGGCGTGATTGCTTATTCGGCATTTCGCTAGCTTGCAGACA
CGAGAGGTGGTCGCATTAATCCGGGGTTGATTCCGTCGGCTCCGGGGCCT
CGTTAACAGGGTCATCGAAAAAGTGTCGCAAGATTCCCACATAAAACCCA
GGTCTCTAGTTGATCTGCTCTGTTTGCGTGGAAAAGGAGGACGAGAAAGC
TCTGGGTGCATTCATTCTTTCGAGCGCTTGCGAGTGAAATCGACTTGCAC
CACGCGCCTAACAGGTGGATGATGAAGCTGATCGAGCTGTGCTGAATCAC
ATCGCCGACATGATGGTTGATTTGGCAGCACCATCCACTCCCGCGACTGC
TGGAACCTCAACAGCCATGGGCAAGGTTGATGGGGGCGGCGGCGACAAGC
TTGGAGACAAGGCGGCAGATCACGTCATGTCTCTCGCAGGAGAAAGCTCG
CTGCGCAAAGAAGTATCTATAGGCAACCGTGACCTTCCCACAAGCCAAAT
TTCTAGTCAACGAGACACCGATGACGATGATGAGGACGCTGATGGCGGTG
CCAATGCTTCGGACACCGATGATTCTGGATCTTCGGATACTGGCGATTCG
CCCGAGGAAGCAGGCGAAAAGGCTCTCACGGGACACCACGGGCAGGCTAC
CTCGAACGACGAGAGGTACCTGGTGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10:38030..39557+

>mRNA_H-canaliculatus_F_contig10.16.1 ID=mRNA_H-canaliculatus_F_contig10.16.1|Name=mRNA_H-canaliculatus_F_contig10.16.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=930bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10:38030..39557+ (Hapterophycus canaliculatus Oshoro5f female)
ACACTTTTGCCATTGGATGCCCCACCGAGCCGCGACCATGTACAGCGGAA
GACACTTTTGCCATTGGATGCCCCACCGAGCCGCGACCATGTACAGCGGA
AGGTGGATGATGAAGCTGATCGAGCTGTGCTGAATCACATCGCCGACATG
ATGGTTGATTTGGCAGCACCATCCACTCCCGCGACTGCTGGAACCTCAAC
AGCCATGGGCAAGGTTGATGGGGGCGGCGGCGACAAGCTTGGAGACAAGG
CGGCAGATCACGTCATGTCTCTCGCAGGAGAAAGCTCGCTGCGCAAAGAA
GTATCTATAGGCAACCGTGACCTTCCCACAAGCCAAATTTCTAGTCAACG
AGACACCGATGACGATGATGAGGACGCTGATGGCGGTGCCAATGCTTCGG
ACACCGATGATTCTGGATCTTCGGATACTGGCGATTCGCCCGAGGAAGCA
GGCGAAAAGGCTCTCACGGGACACCACGGGCAGGCTACCTCGAACGACGA
GAGGTACCTGGTGTGAGTGGATGATGAAGCTGATCGAGCTGTGCTGAATC
ACATCGCCGACATGATGGTTGATTTGGCAGCACCATCCACTCCCGCGACT
GCTGGAACCTCAACAGCCATGGGCAAGGTTGATGGGGGCGGCGGCGACAA
GCTTGGAGACAAGGCGGCAGATCACGTCATGTCTCTCGCAGGAGAAAGCT
CGCTGCGCAAAGAAGTATCTATAGGCAACCGTGACCTTCCCACAAGCCAA
ATTTCTAGTCAACGAGACACCGATGACGATGATGAGGACGCTGATGGCGG
TGCCAATGCTTCGGACACCGATGATTCTGGATCTTCGGATACTGGCGATT
CGCCCGAGGAAGCAGGCGAAAAGGCTCTCACGGGACACCACGGGCAGGCT
ACCTCGAACGACGAGAGGTACCTGGTGTGA
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