mRNA_H-canaliculatus_F_contig11470.1296.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11470.1296.1
Unique NamemRNA_H-canaliculatus_F_contig11470.1296.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11470.1296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11470contigH-canaliculatus_F_contig11470:1840..3165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1326
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11470.1296.1prot_H-canaliculatus_F_contig11470.1296.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11470 2056..2820 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928830.952583-UTR-H-canaliculatus_F_contig11470:1839..20551622928830.952583-UTR-H-canaliculatus_F_contig11470:1839..2055Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11470 1840..2055 +
1696845581.817433-UTR-H-canaliculatus_F_contig11470:1839..20551696845581.817433-UTR-H-canaliculatus_F_contig11470:1839..2055Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11470 1840..2055 +
1622928831.015805-UTR-H-canaliculatus_F_contig11470:2820..31651622928831.015805-UTR-H-canaliculatus_F_contig11470:2820..3165Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11470 2821..3165 +
1696845581.839946-UTR-H-canaliculatus_F_contig11470:2820..31651696845581.839946-UTR-H-canaliculatus_F_contig11470:2820..3165Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11470 2821..3165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928830.9977808-CDS-H-canaliculatus_F_contig11470:2055..28201622928830.9977808-CDS-H-canaliculatus_F_contig11470:2055..2820Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11470 2056..2820 +
1696845581.8269324-CDS-H-canaliculatus_F_contig11470:2055..28201696845581.8269324-CDS-H-canaliculatus_F_contig11470:2055..2820Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11470 2056..2820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11470.1296.1

>prot_H-canaliculatus_F_contig11470.1296.1 ID=prot_H-canaliculatus_F_contig11470.1296.1|Name=mRNA_H-canaliculatus_F_contig11470.1296.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=255bp
MTGPPSHAVSPQQHCPSKTPDISCQRKAVRPIEEFVSRTHAVGAEVGGSD
CGTSYGVDEHVSDSDGGDGMKASAAVQGPSPATTFFPTGEAPSTAFFPTA
EAASTISLQREEAPTSRTIRGDADGSCGDSSEEEAISSNSSGGSGSSSDG
SIGGEDARLGMVRKLYRSFDIGEMHLLEEHGDIGNMSYSSTSNDNDVEDG
VDNGSFDARSVGDKAAERTTRKKIAWEVNLPFDRGRDFDVWAGHGEVTTA
CSAG*
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mRNA from alignment at H-canaliculatus_F_contig11470:1840..3165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11470.1296.1 ID=mRNA_H-canaliculatus_F_contig11470.1296.1|Name=mRNA_H-canaliculatus_F_contig11470.1296.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1326bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11470:1840..3165+ (Hapterophycus canaliculatus Oshoro5f female)
ATCGAACGAGAGATCTACCTTCAGAGGATCGAGGCGGAAAACAAAGCAAA
GTGGGCAAGGGAGGCAGCGGTGCGCGCGGATGAAGTTGCACGATCAGAGC
AACAGGCAAGTTTGCGAGCAACTGAGCAGGCCAAGCAGGAAGAAAGGCAA
AAGAGAGCAGCAGCAGCTACTCCTGCTGTGGTTTCGGCGAGGCGGGAGAA
ACCTCTGTTGGCTTCCATGACAGGGCCGCCGTCGCATGCTGTTTCACCAC
AGCAGCACTGTCCATCGAAGACGCCGGATATCAGCTGCCAGAGAAAGGCA
GTGCGTCCGATTGAGGAGTTCGTCTCACGTACGCATGCTGTCGGAGCAGA
GGTTGGTGGTAGCGACTGTGGCACCTCGTATGGCGTGGATGAGCATGTTT
CAGATAGCGATGGTGGTGACGGAATGAAAGCTTCTGCAGCAGTGCAGGGA
CCGTCTCCGGCGACGACGTTCTTCCCCACAGGGGAGGCGCCATCGACGGC
GTTCTTTCCCACGGCAGAAGCAGCATCGACGATTTCCCTCCAACGGGAAG
AAGCGCCCACTTCGCGCACGATCAGGGGCGATGCCGACGGCAGCTGCGGT
GACAGCTCCGAGGAGGAGGCAATCAGCAGCAACAGCAGCGGCGGCAGCGG
CAGCAGCAGCGATGGCAGCATTGGAGGAGAGGACGCGCGCCTGGGGATGG
TGAGAAAGCTTTATCGCTCGTTCGATATTGGCGAGATGCATCTCTTGGAG
GAGCATGGCGACATCGGCAACATGAGCTACAGCAGCACCAGCAACGACAA
CGACGTGGAGGACGGAGTTGACAACGGAAGCTTTGACGCCCGCAGCGTCG
GCGACAAGGCTGCAGAACGGACGACGAGAAAGAAGATAGCGTGGGAGGTT
AATCTCCCTTTCGATCGGGGAAGGGATTTCGACGTTTGGGCGGGGCACGG
TGAGGTGACCACAGCGTGTTCAGCGGGTTGATTTCTTCTGCACGCGAGAA
TATCAGCGATACAATGCCGCCATTCGGAAATACTTCGACCCCCCGATTCA
ACATAAGTCTACTGTAAGTGTAATGGCGTTTGCTTCGAATTTAGTTTTTC
TGTTGTTCTTTCGTCTCGTGGAACATTGTTTGTTGTTACGTTCGCTCTGT
TTCTAGACGATGCACAAGCAACCGCGTTGTTCCTTGTGACGATGTTTGAT
GCATTTTTGGATATCGGTCGTCGTTTTCCCATACGACAGTGAGTGTCTGC
TAATTTCCGATGCTGACCGCGTTTTTCCTGCGACAATATTTTGCGTGTTT
TTTATTGTATTGCTTTGCTGTTCATG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11470:1840..3165+

>mRNA_H-canaliculatus_F_contig11470.1296.1 ID=mRNA_H-canaliculatus_F_contig11470.1296.1|Name=mRNA_H-canaliculatus_F_contig11470.1296.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1530bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11470:1840..3165+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACAGGGCCGCCGTCGCATGCTGTTTCACCACAGCAGCACTGTCCATC
GAAGACGCCGGATATCAGCTGCCAGAGAAAGGCAGTGCGTCCGATTGAGG
AGTTCGTCTCACGTACGCATGCTGTCGGAGCAGAGGTTGGTGGTAGCGAC
TGTGGCACCTCGTATGGCGTGGATGAGCATGTTTCAGATAGCGATGGTGG
TGACGGAATGAAAGCTTCTGCAGCAGTGCAGGGACCGTCTCCGGCGACGA
CGTTCTTCCCCACAGGGGAGGCGCCATCGACGGCGTTCTTTCCCACGGCA
GAAGCAGCATCGACGATTTCCCTCCAACGGGAAGAAGCGCCCACTTCGCG
CACGATCAGGGGCGATGCCGACGGCAGCTGCGGTGACAGCTCCGAGGAGG
AGGCAATCAGCAGCAACAGCAGCGGCGGCAGCGGCAGCAGCAGCGATGGC
AGCATTGGAGGAGAGGACGCGCGCCTGGGGATGGTGAGAAAGCTTTATCG
CTCGTTCGATATTGGCGAGATGCATCTCTTGGAGGAGCATGGCGACATCG
GCAACATGAGCTACAGCAGCACCAGCAACGACAACGACGTGGAGGACGGA
GTTGACAACGGAAGCTTTGACGCCCGCAGCGTCGGCGACAAGGCTGCAGA
ACGGACGACGAGAAAGAAGATAGCGTGGGAGGTTAATCTCCCTTTCGATC
GGGGAAGGGATTTCGACGTTTGGGCGGGGCACGGTGAGGTGACCACAGCG
TGTTCAGCGGGTTGAATGACAGGGCCGCCGTCGCATGCTGTTTCACCACA
GCAGCACTGTCCATCGAAGACGCCGGATATCAGCTGCCAGAGAAAGGCAG
TGCGTCCGATTGAGGAGTTCGTCTCACGTACGCATGCTGTCGGAGCAGAG
GTTGGTGGTAGCGACTGTGGCACCTCGTATGGCGTGGATGAGCATGTTTC
AGATAGCGATGGTGGTGACGGAATGAAAGCTTCTGCAGCAGTGCAGGGAC
CGTCTCCGGCGACGACGTTCTTCCCCACAGGGGAGGCGCCATCGACGGCG
TTCTTTCCCACGGCAGAAGCAGCATCGACGATTTCCCTCCAACGGGAAGA
AGCGCCCACTTCGCGCACGATCAGGGGCGATGCCGACGGCAGCTGCGGTG
ACAGCTCCGAGGAGGAGGCAATCAGCAGCAACAGCAGCGGCGGCAGCGGC
AGCAGCAGCGATGGCAGCATTGGAGGAGAGGACGCGCGCCTGGGGATGGT
GAGAAAGCTTTATCGCTCGTTCGATATTGGCGAGATGCATCTCTTGGAGG
AGCATGGCGACATCGGCAACATGAGCTACAGCAGCACCAGCAACGACAAC
GACGTGGAGGACGGAGTTGACAACGGAAGCTTTGACGCCCGCAGCGTCGG
CGACAAGGCTGCAGAACGGACGACGAGAAAGAAGATAGCGTGGGAGGTTA
ATCTCCCTTTCGATCGGGGAAGGGATTTCGACGTTTGGGCGGGGCACGGT
GAGGTGACCACAGCGTGTTCAGCGGGTTGA
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