mRNA_H-canaliculatus_F_contig1135.1209.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1135.1209.1 vs. uniprot
Match: D8LCN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCN5_ECTSI) HSP 1 Score: 790 bits (2041), Expect = 3.190e-267 Identity = 556/1171 (47.48%), Postives = 673/1171 (57.47%), Query Frame = 1
Query: 16 EKEPLWPTVPSRITVEDPPLLAQVSELMEHAKPMQTLRHSCIRDRVIADVARKKTTQREQERNISRKRGRRSGTANNELEQVYLPAGVASNGMGLGEGSSRERLCNGGKRQGPVWNG---SANIDRSESTSRRSDVGNIGRSRRGKI-DGLRLSGCLPTTRSEQTISTLQPQLPSSGLPFASHWAHSLDLGDNGLSFPSWNTRACQLERHHRQQRGHRLAVPSPSTRRMPAVAMAATNTNTVGDRGTGSHHSDSSPSAPLPVALSLSSPDIDSSRPLTGVCYITYPPTPDLTAVVGAASPGLPLKRSL---------YSGNSGSGTDKGIMAITRERTDGPPVGLTQRQKETAG-----------------AAAEGA----------LTSGSSAADLTSPGA--QDRSCGYR--VDGG------GLGVERQRGDFEEPSSIAGSHGCTSTSAKDPSGTSPCLAHCAEPDDSKQRQQRHLQQQNPRADDQSGVGKVGHRLSVSMGGEGAVGGRAGRKXXXXXXXXKGRGRQRLILGKNSSRLTMKTASTVNLLGGSRVSPTLPGVDEHQRPVFWLAEMHESLRKNRTRMDTEIETELSMVVRYFMRFGAKEGRDGLTLQDLEAAFRASRRADAFLAIEKKGKAAFAKCLVMFEAHGLTPEAWLEELLSKRKGDSLTTFDMGESIRAYNRAKPSWVRSHKHWLHGFMISEKDLRWCQRFVDPDGNTDVDAEEFFNAVRSTLDGKPRISFEESRAVELILEFERFMAINRIRLVDLFEKVDKDKGGTIDEDELREFLKLGRKKIANGGDVTRAKERKEKMEEEARDKTRMDFLRKVTDAKKRQARSRETGVYGLLVSLKSFTKTTGLRLVDMIQATGAHPEEGMDPSQLQTFFERATNSSLRLTKESLEKIVKNVDEDGDGLLSLSEVQLVLTQHTQDELLLRRLAKAVAQHVVRQDKVDHNNQKVLDPGRLLPRSLSSGVGNRASPPSSSVGWRGGASSLRGTNSSNKNNIGISREREDSDGHNLVVSTMATNAGRAPRWKVGGGGEDDGESSELTMPVSSLRQENKVCASPADLEGASSNADYNYHWILDDEYSIDGIASMEGVELSASVTRERRAA-CHMSSSFVPRTAFKVQAGSNLDSSWLPGFDQRFECQRLTQAQRVMGGSCTWYTN 3375
+K+PLWP +PSRIT+EDPPL+AQV ++ME+A+P+Q LR S RDRV ADV+RK RE+E + RKRGRR GTAN+ LEQ YLPAGVA +GL + SR GG G G +A+ +S +R ++ N R G I +G R LP + SE +S+ Q L S ASH + +G S S ++ + Q +R R +A G G D+SP+A L V +SS D D++ PL GVCYITYPPTPDL AV +SP P +R L S ++GS + A RE + G + AAAE + T G +A +++SP Q+ CG R D G G G +RQRG E+P +G K +RH+ G VG SM EG + R+ KG G L ++M + L+ SR SP+LPGVDEHQ P FWLAEMH+++RKNR+R++T+ ETEL+MVVRYFM FG+K GRDGLTLQDLEAAFRASRRADAFLAIEKKGKAAF KCL M +AHGL PE WL+ELLS+RK D LTTF+MGESIR YNRAKP+WVRSHKHWL FMISEKDLRWCQRFVDPDGNTD+D EE NAV+STLDGKPR+SFEESRAVELILEFE+F++ NRIRLVDLFE+VDKDKGGTID +ELREFLKLGRK ETGV +L SLK+FTKT GLRL DMIQATGAHP+EGMDPSQL FFERAT SSL LTKESLEKIV+NVDEDGDGLLSLSE+QL LTQH QDE+LLRRLAKAVA H+ R K + + + + PR+ +S A+ + +G+ + G ST++ N R RW G GG+ SS + P QE++ + A L G S+NAD+NY WIL DE S+D IASMEG+EL S R A ++SS VPR AFKVQAGSNLDSSWLPGFDQRFE QRL Q QRV+GGSCTWYTN
Sbjct: 12 KKDPLWPAIPSRITLEDPPLIAQVFKMMENAQPVQALRDSLRRDRVAADVSRKFAAPREKESKVGRKRGRRCGTANSALEQAYLPAGVAP-AIGLRQQRSRS----GGSNCGSPSRGLSHAASRHPGDSATRLNN--NHVDERAGDINEGFRSRMGLPGSSSEPILSSAQ-SLSSDITSLASHCGFEFNSRSHGGSNSSLSSSS------RTAQPSNRXXXXXXXXXRNSGQQNSAEVPTWSASHGGG----DTSPTAALSV---MSSGDADTT-PLPGVCYITYPPTPDLAAV-SLSSP--PAERGLDGPRGRARNSSSDAGSDVTQIARAARREDSSADLPGDVEXXXXXXXXXXXXXXXXXXXXXXXXAAAEASPRETHEDECSFTVGGTA-NVSSPVGSWQNERCGNRDIADTGCPGLSSGEGGQRQRGPTEQPPLASG----------------------------KTTLKRHVAYDLEEDPGSYESGLVGAGEVASM--EGIAEQGSERRAAPRRQAGKGGGGGERPLRCGQKVISMMISDGHPLVA-SRGSPSLPGVDEHQLPPFWLAEMHDNMRKNRSRLNTDAETELTMVVRYFMAFGSKGGRDGLTLQDLEAAFRASRRADAFLAIEKKGKAAFIKCLAMLKAHGLAPEDWLQELLSERKQDRLTTFEMGESIRGYNRAKPAWVRSHKHWLREFMISEKDLRWCQRFVDPDGNTDIDEEELSNAVKSTLDGKPRMSFEESRAVELILEFEKFISTNRIRLVDLFERVDKDKGGTIDGEELREFLKLGRKT--------------------------------------------ETGVNRMLDSLKTFTKTKGLRLSDMIQATGAHPDEGMDPSQLLAFFERATGSSLDLTKESLEKIVQNVDEDGDGLLSLSEIQLALTQHAQDEILLRRLAKAVALHMARMLKKTDHTRNIGNGFLRPPRNTTSA----AAATDTDLGFD---PEIHDRXXXXXXXXXXXXXXXRXXGSLASGSTVSGNVSRGLRWSSGSGGD----SSGIIPP----EQEHEDASKQAGLGGPSNNADHNYKWILHDESSMDRIASMEGIELCMSKWERRHPARFQVTSSSVPRAAFKVQAGSNLDSSWLPGFDQRFEVQRLAQGQRVVGGSCTWYTN 1066
BLAST of mRNA_H-canaliculatus_F_contig1135.1209.1 vs. uniprot
Match: A0A6H5JDR9_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR9_9PHAE) HSP 1 Score: 249 bits (636), Expect = 3.820e-73 Identity = 122/162 (75.31%), Postives = 136/162 (83.95%), Query Frame = 1
Query: 1813 MFEAHGLTPEAWLEELLSKRKGDSLTTFDMGESIRAYNRAKPSWVRSHKHWLHGFMISEKDLRWCQRFVDPDG------------NTDVDAEEFFNAVRSTLDGKPRISFEESRAVELILEFERFMAINRIRLVDLFEKVDKDKGGTIDEDELREFLKLGRK 2262
M +AHGL+P+ WL+ELLS+RK D LTTF+MGESIR YNRAKP+WVRSHKHWL FMISEKDLRWCQRFVDPDG NTD+D EE NAVRSTLDGKPR+S EESRAVELILEFE F++ NRIRLVDLFE+VDKDKGGT+D +ELREFLKLGRK
Sbjct: 1 MLKAHGLSPDDWLQELLSRRKQDRLTTFEMGESIRGYNRAKPAWVRSHKHWLREFMISEKDLRWCQRFVDPDGLIAVVSFSYGCRNTDIDEEELSNAVRSTLDGKPRMSLEESRAVELILEFENFISTNRIRLVDLFERVDKDKGGTVDGEELREFLKLGRK 162
BLAST of mRNA_H-canaliculatus_F_contig1135.1209.1 vs. uniprot
Match: A0A7S2B085_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B085_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 1.380e-14 Identity = 85/347 (24.50%), Postives = 163/347 (46.97%), Query Frame = 1
Query: 1684 GAKEGRDGLTLQDLEAAFRASRRADAFLAIEKKGKAAFAKCLVMFEAHGLTPEAWLEELLSKR--KGD-SLTTFDMGESIRAYNRAKPSWVRSHKHWLHGFMISEKDLRWCQRFVDPDGNTDVDAEEFFNAVRST-LDGKPRISFEESRAVELILEFERFMAINRIRLVDLFEKVDKDKGGTIDEDELREFLKLGRKKIANGGDVTRAKERKEKMEEEARDKTRMDFLRKVTDAKKRQARSRETGVYGLLVSLKSFTKTTGLRLVDMIQATGAHPEEGMDPSQLQTFFERATNSSLRLTKESLEKIVKNVDEDGDGLLSLSEVQLVLTQHTQDELLLRRLAKAVAQH 2712
G +G+ ++L++L+ AFR ++RA A E G+ K + E +T E W +E+ + + KGD +++T ++ + + ++K + F SEKDL R++DP+G+ ++D +E +A+R +D P + E +A ++ E M ++R++DLF ++D D G+I ELR+ L K A RA ++ + + KR A S+++G Y +L+ L + + G+R+ D+ +G + G + F + ++ ++ ++ +D+ GDG + +E+ E +RRL K V H
Sbjct: 55 GPSDGK--ISLRELDQAFRRAKRARAGKEYEVLGRECVYKLEALMEQCDVTVEEWFKEMDNSQGGKGDGTVSTLELRRGLASMTKSKK---------MRDFTFSEKDLTDLLRYMDPNGDGELDIQEVEDALRRAHMD--PDSAAAEEKAGAIMKRLEEIMNQRQMRVIDLFRELDDDDSGSITLGELRDGLI----KFAQPSGEERAMAKRAEDAXXXXXXXXXXXXAFEKELAKRLAASKKSGAYDVLLKLDAHMRKEGMRVKDLFSKSG-FDQSGDGVLDVTEFAGAIAFIGIVMSPSEVKLLMDFLDDSGDGEIEAAEL----------EAAIRRLRKDVISH 373
BLAST of mRNA_H-canaliculatus_F_contig1135.1209.1 vs. uniprot
Match: A0A6H5JBM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBM5_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 5.940e-9 Identity = 98/307 (31.92%), Postives = 130/307 (42.35%), Query Frame = 1
Query: 760 DSSPSAPLPVALSLSSPDIDSSRPLTGVCYITYPPTPDLTAVVGAASPGLPLKRSL-----YSGNSGSGTDKGIMAITRERTDGPPVGLTQ--RQKETAGAAAEGALTSGSSAADLTSPGAQDRSCGYRVDG--------GGLGVER-QRGDFEEPSSIAGSHGCTSTSAKDPSGTSPCLAHCAEPDDSKQRQQRHLQQQNPRADDQSGVGKVGHRLSVSMGGEGAVGGRAGRKXXXXXXXXKGRGRQRLILGKNSSRLTMKTASTV----NLLGGSRVSPTLPGVDEHQRPVFWLAEMHESLRKNR 1620
D+SP+A L V +SS D D++ PL GVCYITYPPTPD+ AV ASP P +R L + N S I R R V L ++ET G +GS+AAD + + C + V G G ER D ++ + G + P+ P + K +RH+ G VG SM EG + + KG G G+ R K S + + L SR P+LPGVDEHQ P FWLAEMH+++RKNR
Sbjct: 109 DTSPTAALSV---MSSGDADTT-PLPGVCYITYPPTPDVAAV-SLASP--PAERGLDGPRARARNRRSDVGSDATQIARARRGDSSVDLPGDVEEEETEGG------ENGSAAADASLRETHEDECSFTVGGTTNASSPVGSWHHERCGNRDIDDTGGPGRTSGEEGQRQRAPTEQPPLASE-------KNALKRHVAYDLEEDSGSYKSGLVGAGEMASM--EGITEQGSEHRAVPRRQAGKGGGG-----GERPMRCGQKVISMMISDGHPLVASRGFPSLPGVDEHQLPSFWLAEMHDNMRKNR 388 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1135.1209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1135.1209.1 >prot_H-canaliculatus_F_contig1135.1209.1 ID=prot_H-canaliculatus_F_contig1135.1209.1|Name=mRNA_H-canaliculatus_F_contig1135.1209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=1126bp MRSNREKEPLWPTVPSRITVEDPPLLAQVSELMEHAKPMQTLRHSCIRDRback to top mRNA from alignment at H-canaliculatus_F_contig1135:11717..27819- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1135.1209.1 ID=mRNA_H-canaliculatus_F_contig1135.1209.1|Name=mRNA_H-canaliculatus_F_contig1135.1209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=16103bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1135:11717..27819- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1135:11717..27819- >mRNA_H-canaliculatus_F_contig1135.1209.1 ID=mRNA_H-canaliculatus_F_contig1135.1209.1|Name=mRNA_H-canaliculatus_F_contig1135.1209.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=6756bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1135:11717..27819- (Hapterophycus canaliculatus Oshoro5f female)back to top |