mRNA_H-canaliculatus_F_contig10090.119.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10090.119.1
Unique NamemRNA_H-canaliculatus_F_contig10090.119.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10090.119.1 vs. uniprot
Match: D7FPY3_ECTSI (Peroxin-5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPY3_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.140e-31
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 VMQLMLQAQRWDATDADAHVVLGVLYNVSRDYDSAAEAFRRAIEARPNDHSLWNKLGATLAN 186
            VMQLMLQAQRWDATDADAHVVLGVLYNVSRDYDSAAEAFRRAIEARPNDHSLWNKLGATLAN
Sbjct:  579 VMQLMLQAQRWDATDADAHVVLGVLYNVSRDYDSAAEAFRRAIEARPNDHSLWNKLGATLAN 640
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BLAST of mRNA_H-canaliculatus_F_contig10090.119.1 vs. uniprot
Match: I2CRE6_NANGC (Peroxin-5 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CRE6_NANGC)

HSP 1 Score: 96.3 bits (238), Expect = 9.110e-22
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:    1 VMQLMLQAQRWDAT-------DADAHVVLGVLYNVSRDYDSAAEAFRRAIEARPNDHSLWNKLGATLANNRQS 198
            V QLMLQAQ WD         DAD  VVLGVLYNVS DYDSAA AFR+A+ ARP+D+SLWNKLGATLAN+++S
Sbjct:  113 VTQLMLQAQDWDRATCGPEGQDADVEVVLGVLYNVSHDYDSAAAAFRQALVARPSDYSLWNKLGATLANSQRS 185
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BLAST of mRNA_H-canaliculatus_F_contig10090.119.1 vs. uniprot
Match: K3WYZ0_GLOUD (Peroxin-5 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WYZ0_GLOUD)

HSP 1 Score: 94.7 bits (234), Expect = 3.330e-20
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 VMQLMLQAQRWDATDADAHVVLGVLYNVSRDYDSAAEAFRRAIEARPNDHSLWNKLGATLANNRQS 198
            VMQLMLQA+  D +D+D  VVLGVLYNVS+DYD+AA +FR A + RPN++SLWNKLGATLAN+ +S
Sbjct:  438 VMQLMLQARAHDPSDSDVQVVLGVLYNVSKDYDAAANSFRMAAQERPNEYSLWNKLGATLANSSRS 503
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BLAST of mRNA_H-canaliculatus_F_contig10090.119.1 vs. uniprot
Match: A0A7S1GFM5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GFM5_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 8.590e-20
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 VMQLMLQAQRWDATDADAHVVLGVLYNVSRDYDSAAEAFRRAIEARPNDHSLWNKLGATLANNRQS 198
            V QLM++AQ WD TDA+  VVLGVLYNVSRD+DSA  AF  A++ +P+D+SLWNKLGAT AN+ +S
Sbjct:  223 VAQLMVKAQEWDPTDAEVKVVLGVLYNVSRDFDSAIAAFSAALDTKPDDYSLWNKLGATRANSSRS 288
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BLAST of mRNA_H-canaliculatus_F_contig10090.119.1 vs. uniprot
Match: A0A024G6X9_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6X9_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.490e-19
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 VMQLMLQAQRWDATDADAHVVLGVLYNVSRDYDSAAEAFRRAIEARPNDHSLWNKLGATLANNRQS 198
            VMQ ML AQ  D+ DAD HVVLGVLY+VS+DYD+A + FR A + RP++HSLWNKLGATLAN+  S
Sbjct:  326 VMQFMLHAQNHDSEDADIHVVLGVLYSVSKDYDAAIQNFRFAAQRRPDEHSLWNKLGATLANSSHS 391
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BLAST of mRNA_H-canaliculatus_F_contig10090.119.1 vs. uniprot
Match: A0A1V9Y5F5_9STRA (Peroxin-5 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y5F5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.950e-19
Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 VMQLMLQAQRWDATDADAHVVLGVLYNVSRDYDSAAEAFRRAIEARPNDHSLWNKLGATLANNRQS 198
            VMQLMLQAQ  D  D+D  VVLGVLYNVS+DYD+A   FR A  ARP ++SLWNKLGATLAN+ +S
Sbjct:  441 VMQLMLQAQSHDPLDSDVQVVLGVLYNVSKDYDAAVRCFRSASSARPQEYSLWNKLGATLANSSRS 506
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BLAST of mRNA_H-canaliculatus_F_contig10090.119.1 vs. uniprot
Match: A0A836CKH3_9STRA (Peroxin-5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKH3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.250e-19
Identity = 46/79 (58.23%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:    1 VMQLMLQAQRWD-------------ATDADAHVVLGVLYNVSRDYDSAAEAFRRAIEARPNDHSLWNKLGATLANNRQS 198
            VMQLM  A++WD               DAD  VVLGVL+NVSRDYD+A  AFR A+  RP DHSLWNKLGATLAN+ +S
Sbjct:   82 VMQLMRSAEQWDFXXXXXXXXXXXXTADADVKVVLGVLFNVSRDYDAAVGAFREALRLRPEDHSLWNKLGATLANSNRS 160
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BLAST of mRNA_H-canaliculatus_F_contig10090.119.1 vs. uniprot
Match: A0A067C1N4_SAPPC (Peroxin-5 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C1N4_SAPPC)

HSP 1 Score: 91.3 bits (225), Expect = 5.530e-19
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 VMQLMLQAQRWDATDADAHVVLGVLYNVSRDYDSAAEAFRRAIEARPNDHSLWNKLGATLANNRQS 198
            VMQLMLQAQ  D  D+D  VVLGVLYNVS+DYD+A   FR A  ARP++++LWNKLGATLAN+ +S
Sbjct:  449 VMQLMLQAQSHDPLDSDVQVVLGVLYNVSKDYDAAVRCFRLAASARPDEYALWNKLGATLANSSRS 514
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BLAST of mRNA_H-canaliculatus_F_contig10090.119.1 vs. uniprot
Match: H3GFX8_PHYRM (Peroxin-5 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFX8_PHYRM)

HSP 1 Score: 90.9 bits (224), Expect = 8.080e-19
Identity = 41/66 (62.12%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 VMQLMLQAQRWDATDADAHVVLGVLYNVSRDYDSAAEAFRRAIEARPNDHSLWNKLGATLANNRQS 198
            VMQLMLQA+  D +D+D  VVLGVLYNVS+DYD+A E+F+ A ++RP++++LWNK+GATLAN+ +S
Sbjct:  516 VMQLMLQARAHDPSDSDVQVVLGVLYNVSKDYDAAVESFKAATDSRPDEYALWNKIGATLANSARS 581
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BLAST of mRNA_H-canaliculatus_F_contig10090.119.1 vs. uniprot
Match: A0A3M6VSH2_9STRA (Peroxin-5 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSH2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.050e-18
Identity = 41/66 (62.12%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:    1 VMQLMLQAQRWDATDADAHVVLGVLYNVSRDYDSAAEAFRRAIEARPNDHSLWNKLGATLANNRQS 198
            VMQLMLQA+  D +D+D  VVLGVLYNVS+DYD+A E+F+ A ++RP+++ LWNK+GATLAN+ +S
Sbjct:  513 VMQLMLQARAHDPSDSDVQVVLGVLYNVSKDYDAAVESFKAATDSRPDEYGLWNKIGATLANSARS 578
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10090.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPY3_ECTSI1.140e-31100.00Peroxin-5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP... [more]
I2CRE6_NANGC9.110e-2268.49Peroxin-5 n=2 Tax=Nannochloropsis gaditana TaxID=7... [more]
K3WYZ0_GLOUD3.330e-2068.18Peroxin-5 n=1 Tax=Globisporangium ultimum (strain ... [more]
A0A7S1GFM5_9STRA8.590e-2065.15Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A024G6X9_9STRA2.490e-1966.67Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A1V9Y5F5_9STRA2.950e-1968.18Peroxin-5 n=1 Tax=Achlya hypogyna TaxID=1202772 Re... [more]
A0A836CKH3_9STRA3.250e-1958.23Peroxin-5 n=1 Tax=Tribonema minus TaxID=303371 Rep... [more]
A0A067C1N4_SAPPC5.530e-1966.67Peroxin-5 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A... [more]
H3GFX8_PHYRM8.080e-1962.12Peroxin-5 n=1 Tax=Phytophthora ramorum TaxID=16432... [more]
A0A3M6VSH2_9STRA1.050e-1862.12Peroxin-5 n=2 Tax=Peronospora effusa TaxID=542832 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10090contigH-canaliculatus_F_contig10090:112..1692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue9.5e-27
Seed eggNOG ortholog2880.D7FPY3
Preferred namepex5
KEGG koko:K13342
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
GOsGO:0000268,GO:0003674,GO:0005048,GO:0005052,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005829,GO:0006605,GO:0006625,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016043,GO:0016558,GO:0016560,GO:0017038,GO:0031090,GO:0031903,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0042277,GO:0042579,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043574,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072662,GO:0072663,GO:0098588,GO:0098805
EggNOG free text desc.peroxisome matrix targeting signal-1 binding
EggNOG OGsKOG1125@1,KOG1125@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size366
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10090.119.1prot_H-canaliculatus_F_contig10090.119.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10090 115..1692 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928636.9431157-UTR-H-canaliculatus_F_contig10090:111..1141622928636.9431157-UTR-H-canaliculatus_F_contig10090:111..114Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10090 112..114 +
1696845506.5909169-UTR-H-canaliculatus_F_contig10090:111..1141696845506.5909169-UTR-H-canaliculatus_F_contig10090:111..114Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10090 112..114 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928636.9558794-CDS-H-canaliculatus_F_contig10090:114..2761622928636.9558794-CDS-H-canaliculatus_F_contig10090:114..276Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10090 115..276 +
1696845506.6083715-CDS-H-canaliculatus_F_contig10090:114..2761696845506.6083715-CDS-H-canaliculatus_F_contig10090:114..276Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10090 115..276 +
1622928636.9688747-CDS-H-canaliculatus_F_contig10090:851..9681622928636.9688747-CDS-H-canaliculatus_F_contig10090:851..968Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10090 852..968 +
1696845506.624248-CDS-H-canaliculatus_F_contig10090:851..9681696845506.624248-CDS-H-canaliculatus_F_contig10090:851..968Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10090 852..968 +
1622928636.9786587-CDS-H-canaliculatus_F_contig10090:1608..16921622928636.9786587-CDS-H-canaliculatus_F_contig10090:1608..1692Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10090 1609..1692 +
1696845506.6338797-CDS-H-canaliculatus_F_contig10090:1608..16921696845506.6338797-CDS-H-canaliculatus_F_contig10090:1608..1692Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10090 1609..1692 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10090.119.1

>prot_H-canaliculatus_F_contig10090.119.1 ID=prot_H-canaliculatus_F_contig10090.119.1|Name=mRNA_H-canaliculatus_F_contig10090.119.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=121bp
MQLMLQAQRWDATDADAHVVLGVLYNVSRDYDSAAEAFRRAIEARPNDHS
LWNKLGATLANNRQSEDALPAYRRAIATKPGYARAWLNMGISQANLNRYE
EASSCYLQALRLNPQAKHIW*
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mRNA from alignment at H-canaliculatus_F_contig10090:112..1692+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10090.119.1 ID=mRNA_H-canaliculatus_F_contig10090.119.1|Name=mRNA_H-canaliculatus_F_contig10090.119.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1581bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10090:112..1692+ (Hapterophycus canaliculatus Oshoro5f female)
GTGATGCAGCTGATGCTGCAGGCGCAGCGATGGGACGCGACGGACGCAGA
CGCGCACGTGGTCCTCGGGGTGCTGTACAACGTGTCTCGCGACTACGACA
GCGCCGCGGAGGCATTCCGAAGAGCGATCGAGGCCAGGCCAAACGATCAC
TCCCTCTGGAATAAGGTGAGGGTCGGGGGTAGGGACAGTCGGGGGGGTGT
CGTGGCTGGAGGGTTCGCTGGACCGGCCGGTAGAGACTTGTGCGCGCTGG
CGCGGTGGTATCACAGGATGTCCGGGTTGGCCATGACGAAGACGGGGGGG
GGTGTTAAGCTGCTGCATGGTACCGTTCGACAAAGCTGCTTGTTGGGTAC
GAGAGGGGTGCGAACGTTGTTCGAAGGGCGGGGGAGTATGTCACAGGCTG
ACGAGACGGTCGCCCCGTGACCGGATGCGCTGAGATAGTGAGGTAGTGGA
GGTGAAAATTTGAGAGCCCACGCTCACAAGGGATCGCTTCGTGTGGAAAG
GTGACGCGGGAGGTGGTGGGCGGAGCTATTTCTGCGTAATTATGTTTTCA
TTCCCGGCCTACCAGTCGGTAAACGGTATCGCGGTGTCTGGTTCGCTGGA
ATTTCCGTGGAGGACAAACCGCGTCTGAATGCGAGTATCAATCAGGGTGC
CGCGCGGTGGATTTCCATCTTGCTCTTGTTCGGGTCATGGACCGTTTCCT
GCGTCTGTGTTTGCAACCCCCTCGTGTTTCGTCTTCGCAGCTGGGGGCGA
CGTTGGCGAACAACAGGCAGAGCGAAGACGCTCTGCCCGCCTACCGCCGA
GCTATCGCGACCAAACCCGGGTACGCACGAGCCTGGCTCAACATGGGCAT
AAGTCAGGTGAGTGGAGAGGAGGAATACTGTTCATGGCCCTACTGAATTT
GCCCGGGGGGTGCCTCCTAACCATGCGGATACGTTTGTGATAGGCAAATA
CAGCACGGCGGCCTATTAATAGTGCATATTCGTGTTTCGGCCCGGGCAAA
TGGGCGTTTTTCCAACTCTGGTCTCTGGTGTTCCACGTTTTCTCCTCGAG
GGCTGCGTCTTTCAGGGTGGTGTCTGCGCTTTTTGCGGGTGCACGCGCTT
TGGCTCGCTCTAAGCCTTGCGCTGCTTTTCCTCCTCGCTCTCGGTTGGCG
CGACCTGACGAGGCGCCAGCTCCCTTCGTTGCCAAAGAAGACCCGAGACG
CTCTCCGTTTTTTCCGTTGGATCTACGAAACATTTGTTTGTCGGGGTTGT
GACGCGAACAACGGCAGGTGACTCTAGCAGAAAGATCGCAAGGGGGCATC
GTTTGATGTAGTTGTGGCGTGCCGCCCTTGATCCTCAGCGTGCCCCCCCC
CCTGCCCCCGTTTACTTGTCCGTTATTCGTTTCCTCTTCTCTTGCGGTGT
GACTACGTCGTACTTGGGTTGATTTTCACCTTTTTTTCTATCCGCGTTTT
CTTTCGCGTATCGTGTCCGTTGCTTCAATTTGATCGTTTTACCCAAGGCC
AACCTGAACCGGTACGAGGAAGCGTCATCGTGCTACCTGCAGGCCTTGAG
ATTAAATCCTCAAGCCAAACACATATGGTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10090:112..1692+

>mRNA_H-canaliculatus_F_contig10090.119.1 ID=mRNA_H-canaliculatus_F_contig10090.119.1|Name=mRNA_H-canaliculatus_F_contig10090.119.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=726bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10090:112..1692+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCAGCTGATGCTGCAGGCGCAGCGATGGGACGCGACGGACGCAGACGC
GCACGTGGTCCTCGGGGTGCTGTACAACGTGTCTCGCGACTACGACAGCG
CCGCGGAGGCATTCCGAAGAGCGATCGAGGCCAGGCCAAACGATCACTCC
CTCTGGAATAAGATGCAGCTGATGCTGCAGGCGCAGCGATGGGACGCGAC
GGACGCAGACGCGCACGTGGTCCTCGGGGTGCTGTACAACGTGTCTCGCG
ACTACGACAGCGCCGCGGAGGCATTCCGAAGAGCGATCGAGGCCAGGCCA
AACGATCACTCCCTCTGGAATAAGCTGGGGGCGACGTTGGCGAACAACAG
GCAGAGCGAAGACGCTCTGCCCGCCTACCGCCGAGCTATCGCGACCAAAC
CCGGGTACGCACGAGCCTGGCTCAACATGGGCATAAGTCAGCTGGGGGCG
ACGTTGGCGAACAACAGGCAGAGCGAAGACGCTCTGCCCGCCTACCGCCG
AGCTATCGCGACCAAACCCGGGTACGCACGAGCCTGGCTCAACATGGGCA
TAAGTCAGGCCAACCTGAACCGGTACGAGGAAGCGTCATCGTGCTACCTG
CAGGCCTTGAGATTAAATCCTCAAGCCAAACACATATGGTGAGCCAACCT
GAACCGGTACGAGGAAGCGTCATCGTGCTACCTGCAGGCCTTGAGATTAA
ATCCTCAAGCCAAACACATATGGTGA
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