mRNA_H-canaliculatus_F_contig11297.1163.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11297.1163.1
Unique NamemRNA_H-canaliculatus_F_contig11297.1163.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig11297.1163.1 vs. uniprot
Match: D7FLW2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW2_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 1.480e-32
Identity = 94/135 (69.63%), Postives = 104/135 (77.04%), Query Frame = 2 
Query:    2 ALCVLPALPSLRGLSKAIRGAEIAGVVVGVALRLRSLRFKDMDKMAKPRQRRSLSISGSSFKTNASDESPRPTTNDRNSTLIKRRSASLAGTAVAPSPSELIRPLTSLTSSLSLPLPPAASNTDGFEIVITGSSS 406
            ALCVLPALPSLRGLSKAIRGAEIAGVVVGVALRLRSLRFK++D MA PR RRSLSISGSSFK +   +SP P  N R  TL+KRRSASLAG A+APSPS+               LP AASN+DGFEIVIT +S+
Sbjct:  627 ALCVLPALPSLRGLSKAIRGAEIAGVVVGVALRLRSLRFKNVDVMATPRHRRSLSISGSSFKHDIDTDSP-PRANIRG-TLVKRRSASLAGNAIAPSPSKWES------------LPAAASNSDGFEIVITDTSA 747
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11297.1163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLW2_ECTSI1.480e-3269.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11297contigH-canaliculatus_F_contig11297:599..4224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size3265
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11297.1163.1prot_H-canaliculatus_F_contig11297.1163.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11297 723..1506 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928811.7649612-UTR-H-canaliculatus_F_contig11297:598..7221622928811.7649612-UTR-H-canaliculatus_F_contig11297:598..722Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11297 599..722 +
1696845573.750457-UTR-H-canaliculatus_F_contig11297:598..7221696845573.750457-UTR-H-canaliculatus_F_contig11297:598..722Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11297 599..722 +
1622928811.8094764-UTR-H-canaliculatus_F_contig11297:1506..42241622928811.8094764-UTR-H-canaliculatus_F_contig11297:1506..4224Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11297 1507..4224 +
1696845573.7823248-UTR-H-canaliculatus_F_contig11297:1506..42241696845573.7823248-UTR-H-canaliculatus_F_contig11297:1506..4224Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11297 1507..4224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928811.7784195-CDS-H-canaliculatus_F_contig11297:722..7451622928811.7784195-CDS-H-canaliculatus_F_contig11297:722..745Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11297 723..745 +
1696845573.7613225-CDS-H-canaliculatus_F_contig11297:722..7451696845573.7613225-CDS-H-canaliculatus_F_contig11297:722..745Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11297 723..745 +
1622928811.7913823-CDS-H-canaliculatus_F_contig11297:1106..15061622928811.7913823-CDS-H-canaliculatus_F_contig11297:1106..1506Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11297 1107..1506 +
1696845573.7719827-CDS-H-canaliculatus_F_contig11297:1106..15061696845573.7719827-CDS-H-canaliculatus_F_contig11297:1106..1506Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11297 1107..1506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11297.1163.1

>prot_H-canaliculatus_F_contig11297.1163.1 ID=prot_H-canaliculatus_F_contig11297.1163.1|Name=mRNA_H-canaliculatus_F_contig11297.1163.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=141bp
MDKMAKPRQRRSLSISGSSFKTNASDESPRPTTNDRNSTLIKRRSASLAG
TAVAPSPSELIRPLTSLTSSLSLPLPPAASNTDGFEIVITGSSSSGIEAV
DGDVDGAADHTVVGTGNAGGRDFVRRSDSGAPPQPSRRAH*
back to top

mRNA from alignment at H-canaliculatus_F_contig11297:599..4224+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11297.1163.1 ID=mRNA_H-canaliculatus_F_contig11297.1163.1|Name=mRNA_H-canaliculatus_F_contig11297.1163.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3626bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11297:599..4224+ (Hapterophycus canaliculatus Oshoro5f female)
GGCTTTGTGCGTGCTGCCTGCACTGCCATCGTTAAGGGGCCTTTCCAAGG
CCATCCGCGGGGCCGAGATTGCGGGGGTGGTGGTCGGGGTAGCGTTGCGG
CTACGGTCGTTGCGTTTCAAGGACATGGACAAGATGGCCAAGCCTAGGTC
AGTGGCTTGATCTGTTCAGATATACCTTGTGCTTTGCGGGGTCCCCTATG
GAATGTGCGAAAATTGGACGCTGCCTGTGTCACCTGCTGCGGTTCGCTTT
GAGTCTCTCCTCGAATGGTTTGCCGGTTCGTTTCAAGATTTGGAAAGGTA
GTAAAGGCGGCAGCACGGGCAGTACGATAACGACAGTGATGACGACAAAG
CAGGCAATGACGGCATGAAAACCAGCCACAGCGACAGGAATCAAAAACGA
ACAATCAGCGACAACACACTAAACAGAGACAACGACAACACGAACTACGG
AAGCTGCGGCAACAACAGCAACAATGAAAGCAGCAACCTGCTTGTACCCC
TCCCGCAGGCAACGTCGAAGCCTGTCCATCTCAGGATCATCTTTCAAGAC
CAACGCGAGCGACGAGTCCCCAAGGCCCACCACGAACGATCGCAACAGCA
CCCTCATCAAGCGCCGGAGCGCATCCCTGGCGGGTACGGCCGTTGCGCCA
TCTCCATCGGAGTTGATCCGGCCGTTGACATCGTTGACATCGTCCTTGTC
GCTGCCGTTACCCCCAGCTGCCTCGAACACGGACGGGTTCGAGATCGTGA
TCACCGGCAGCAGCAGTAGCGGCATCGAAGCCGTTGACGGTGACGTTGAC
GGTGCCGCCGACCACACCGTTGTCGGTACTGGGAACGCCGGCGGTCGCGA
CTTTGTGAGGCGTTCTGACTCCGGGGCGCCGCCGCAACCATCGAGACGGG
CGCATTGAGAAGCGTTCCGAGAACGAGCTCCTGTTTGTGTCGAGTTTGGG
GACGAAATTGGGTTGATGATGCGGATATGGAATCTAATGTAAGCTGGTGT
GTTGTTGGAAATTATTCTTGTAGGGACTGAGATTGCGTGGAATTCCTTTC
TTGTGGGTGTGAAGTACTGGCTTAAGATTCTTCGCGTCTCGCGTTCGCTG
GTCGCGACCGTAAGAATTTCGGCGACCGCTTGAGCTGCACACTCACCTCC
TCATTTACGTCTGCTATCTAGTTTCAGACGAAATTGACTGTCGTTGGGTC
GTAGTCAACCGTAGCGCCAAGTGGTTGTATTTCCCAGCATCGCACACAAC
ACGCTGTTGTTGAACATCAGCCAGTCAAGAACTTGCGAGCTTGCATCCAT
GATGTCCAAGTAGGGGTGTTGCAAGGTGCTTGTTCAGCACGAGAATGTGT
CGCCGTTGGTCCCAAGATGTGGTCAGGCATGGTTAGGCCAGCCTCCGTTT
TCGTTCTTATTTTTACTTCGTGTCCTCCCTTCAGGCTTGCCGCTGACGAG
AGCAAGATTGTAGCGGTTGGCTTCCAAAGGGCAATGGGAGCGTCTGGAAT
ATCTTCGTCAGATCTAAACGACGCCGTTGTGAACTTCGTGTTGGCGTTGG
CTCCTTTAGGCGTGTTGCCATCGCTGCCATGTTGTATTTATGTTCCGTTT
TGGTGTGTGAGTCTTGCTTCGATTAGATCAGTCTCTACCTCGTAACCTTT
GTGAAAGAGTTATTTCCTGTAAATGAAGTGTTTTTTCAGATGACTTGTTG
AGCTTTCCATGGGGTCATGGAGTGGTTCACCTGCGGGTTATCAGAATCGG
TACGTCATGCCTATTAGTTTTGGTTTCGTGGACCCCCTCCTTGCTGACGC
ATAGTGCTTCGCAAGGCAATTGCGACCCAAGTACGTGCTGTTCCCTTGGG
TGCTCGGTAGTAAGCAAACGAGCAATTTGAACACTGTTTTCTTCACTTGT
ACGCGCAAGTGTATTTGTGATATGTTACGGCGCGTTACAGTCCGAGGAAG
GGGTAGTGGAAGGGTGCATGCACCGTGACCGAGGGGGGAAACTGCCGGAA
AATGTCTCTTGTGCCTGCTTTGCGGGGTGTCTCATATGTGACCGCGGCGG
ATACGTCTTTTTGTACAGAGTTGTACCGAAAAGTGTTGGACACCGAACAG
GTGGACAGACGCCCGAAAAGTGGGATGAAAGCACACAAACACACACACAC
ACACATACGTGTGTGGATCACCTGCGAGACTCATGTTTGTGAGAGAAGAG
AAAAATGCAAGCCTTTTGGTTGTCTTGGCTCGTTTTCCTCAAAGAAAAAA
ACGCTTTGTAGGAAAAAGATTCAACGACACCAAAGGAAAGCCCTCTGTAA
GCTCTTGAGACAAAATATAGCGACTCAGGTGGGTTCTGTTAAATTCATTA
CAGTAAGGGTTCAGCATCGTGGAAGATCGTTTTATCTGGCACGGATGGTG
GGAGATACATCTGCGTAAGACGCACTTCGATTCTTCAGATGAGTCGCCGA
AAATAGCGTTTCCCCGTATTCGGTACAACTACAGTACTAGTTTTTTTTCG
AAACTTGACCTGGGATCGTGAGGAATATTGTTGGAGTAGCATGACCTGTC
AACGATCTTGCTAGATGAGAGCGCGTTTCGAAGGAGTTTACCGTGGGTGG
GGTGCACTGTGGAAGGCTTTCCGAGTGGAATGTGCTTGTGTTCCAATTGT
TTGAGAGTGTAATCGTTTGCTTCGTCTCACGGCATCTGTTTATTTAGTCA
AGAAAGGCATCCTTTCGCTCCAGAGGAAATCCTGTCCTCACGTTGGTCTG
CTTGTTCTTGTAAATCTTGAAGCTCTAGACGGCGCTGATTCGGAATGGAA
GAGAGAGAGGTAACATCTTTGGCTTAGAGAAGATGAAACAGTATAGCTAC
GCATTGTGGAACCGATCCACTAGAAGCTCGTGGACCATGGCCAGATAGAA
TGGGCGGAGGCTCCGCAGCCCACTCGTTAGTAAAAATGTCCGGGAGGGGT
GAGCCGGACGTACGCGTGGATGGCCTGGTCAAGTTCCATGAGAATTTTCT
TGAAAGGTTTGGCATGCGAAAGGTTTGGCAGAACCGCGTTCCTCAACCGA
TACTTTCTGTGACCACCCGTTGGGAGTTAGGAGTGGATTTTCACGGGAGT
AATGAAGGATGCGTTGGATCAGGCGACGTGTTGTTTTTGACGTCTTGTTT
TTGCATGGGCTCTGTCGCTCAAAGATCAACAACGTCGTTGTTCATCCAAC
AATCAGTACCACCCTGATTGCCCAGGCTGATGGGTGTACGGAAGATCGCT
TGTCCTCAGTGTTGCGGCCACGAAAAGGAGATAGATGCGTAAAACAGGTG
GCGGTCGACTGGCACATCGCCGGGTGCAGGTAGAACCGGCAAATAACCTC
TTCCATTCACCACAGCAGCTAGGCAGAAGCTAAAACACGCATCGTTCTTG
TTCTCACCACAACAGAAGACGGACTCCGTCCATGAGATGCACTACTGCCT
ACTTCGAAAACCAATCTTTCCTGACGCTTGATCGATCCAAGTAGGGCCTA
CCTTGAAGCCAAAATTGAGTCAGCTCTCTCGTGTGCCGCACTGTGACACC
GCTACTCGTACCCGGTCTTTCATTTGGTCGTCTTCGGTCGTCAATATTTA
TCTTGATATACGAAGAAAGCAAAATG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11297:599..4224+

>mRNA_H-canaliculatus_F_contig11297.1163.1 ID=mRNA_H-canaliculatus_F_contig11297.1163.1|Name=mRNA_H-canaliculatus_F_contig11297.1163.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=846bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11297:599..4224+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGACAAGATGGCCAAGCCTAGATGGACAAGATGGCCAAGCCTAGGCAA
CGTCGAAGCCTGTCCATCTCAGGATCATCTTTCAAGACCAACGCGAGCGA
CGAGTCCCCAAGGCCCACCACGAACGATCGCAACAGCACCCTCATCAAGC
GCCGGAGCGCATCCCTGGCGGGTACGGCCGTTGCGCCATCTCCATCGGAG
TTGATCCGGCCGTTGACATCGTTGACATCGTCCTTGTCGCTGCCGTTACC
CCCAGCTGCCTCGAACACGGACGGGTTCGAGATCGTGATCACCGGCAGCA
GCAGTAGCGGCATCGAAGCCGTTGACGGTGACGTTGACGGTGCCGCCGAC
CACACCGTTGTCGGTACTGGGAACGCCGGCGGTCGCGACTTTGTGAGGCG
TTCTGACTCCGGGGCGCCGCCGCAACCATCGAGACGGGCGCATTGAGCAA
CGTCGAAGCCTGTCCATCTCAGGATCATCTTTCAAGACCAACGCGAGCGA
CGAGTCCCCAAGGCCCACCACGAACGATCGCAACAGCACCCTCATCAAGC
GCCGGAGCGCATCCCTGGCGGGTACGGCCGTTGCGCCATCTCCATCGGAG
TTGATCCGGCCGTTGACATCGTTGACATCGTCCTTGTCGCTGCCGTTACC
CCCAGCTGCCTCGAACACGGACGGGTTCGAGATCGTGATCACCGGCAGCA
GCAGTAGCGGCATCGAAGCCGTTGACGGTGACGTTGACGGTGCCGCCGAC
CACACCGTTGTCGGTACTGGGAACGCCGGCGGTCGCGACTTTGTGAGGCG
TTCTGACTCCGGGGCGCCGCCGCAACCATCGAGACGGGCGCATTGA
back to top