mRNA_H-canaliculatus_F_contig10082.111.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10082.111.1
Unique NamemRNA_H-canaliculatus_F_contig10082.111.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10082.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10082contigH-canaliculatus_F_contig10082:2807..3319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size375
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928635.8724372-CDS-H-canaliculatus_F_contig10082:2806..30741622928635.8724372-CDS-H-canaliculatus_F_contig10082:2806..3074Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10082 2807..3074 -
1696845506.0958753-CDS-H-canaliculatus_F_contig10082:2806..30741696845506.0958753-CDS-H-canaliculatus_F_contig10082:2806..3074Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10082 2807..3074 -
1622928635.8972514-CDS-H-canaliculatus_F_contig10082:3212..33191622928635.8972514-CDS-H-canaliculatus_F_contig10082:3212..3319Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10082 3213..3319 -
1696845506.1044798-CDS-H-canaliculatus_F_contig10082:3212..33191696845506.1044798-CDS-H-canaliculatus_F_contig10082:3212..3319Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10082 3213..3319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10082.111.1prot_H-canaliculatus_F_contig10082.111.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10082 2807..3319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10082.111.1

>prot_H-canaliculatus_F_contig10082.111.1 ID=prot_H-canaliculatus_F_contig10082.111.1|Name=mRNA_H-canaliculatus_F_contig10082.111.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=125bp
CPSCSLDVKGKELRLHIAGHILQYEVLYQLYVCLFLTCGFCGRQGCKVWA
PLKGKRAPQVRLSCFFAPKADSRSQDVTFSFKSAVKFNKSASSTNVPMQC
IWCEPPVWEWKYSMEFHAKSRHSKF
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mRNA from alignment at H-canaliculatus_F_contig10082:2807..3319-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10082.111.1 ID=mRNA_H-canaliculatus_F_contig10082.111.1|Name=mRNA_H-canaliculatus_F_contig10082.111.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=513bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10082:2807..3319- (Hapterophycus canaliculatus Oshoro5f female)
TGTCCCAGCTGTTCTTTGGACGTCAAGGGGAAGGAGCTAAGGCTTCACAT
CGCGGGGCACATCCTGCAATACGAGGTACTATACCAACTATACGTGTGTT
TATTTTTGTAAATGTTGAGAGAACCCAGGCACCAAGGCACTCGAAGTACA
AAAAATGGCGCCGGTCGTGCTGTGCTGTTTTCATCAACACGTTCCGTCTG
TCGCGCATCTCGTGCCGTTATCCCTCAGGAGTTGCAAAAGGGCAGAACGT
GCGGGTTTTGTGGGCGTCAGGGCTGCAAGGTGTGGGCGCCTCTGAAGGGC
AAGAGGGCGCCTCAAGTTCGTTTAAGCTGCTTTTTCGCACCGAAGGCTGA
CTCTCGAAGCCAAGACGTGACCTTCAGTTTCAAGTCAGCCGTGAAGTTCA
ACAAGAGCGCATCATCTACAAACGTGCCGATGCAATGCATTTGGTGTGAG
CCTCCTGTGTGGGAGTGGAAGTACTCTATGGAGTTCCACGCGAAAAGCCG
CCACTCCAAGTTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10082:2807..3319-

>mRNA_H-canaliculatus_F_contig10082.111.1 ID=mRNA_H-canaliculatus_F_contig10082.111.1|Name=mRNA_H-canaliculatus_F_contig10082.111.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=750bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10082:2807..3319- (Hapterophycus canaliculatus Oshoro5f female)
TGTCCCAGCTGTTCTTTGGACGTCAAGGGGAAGGAGCTAAGGCTTCACAT
CGCGGGGCACATCCTGCAATACGAGGTACTATACCAACTATACGTGTGTT
TATTTTTTGTCCCAGCTGTTCTTTGGACGTCAAGGGGAAGGAGCTAAGGC
TTCACATCGCGGGGCACATCCTGCAATACGAGGTACTATACCAACTATAC
GTGTGTTTATTTTTAACGTGCGGGTTTTGTGGGCGTCAGGGCTGCAAGGT
GTGGGCGCCTCTGAAGGGCAAGAGGGCGCCTCAAGTTCGTTTAAGCTGCT
TTTTCGCACCGAAGGCTGACTCTCGAAGCCAAGACGTGACCTTCAGTTTC
AAGTCAGCCGTGAAGTTCAACAAGAGCGCATCATCTACAAACGTGCCGAT
GCAATGCATTTGGTGTGAGCCTCCTGTGTGGGAGTGGAAGTACTCTATGG
AGTTCCACGCGAAAAGCCGCCACTCCAAGTTCAACGTGCGGGTTTTGTGG
GCGTCAGGGCTGCAAGGTGTGGGCGCCTCTGAAGGGCAAGAGGGCGCCTC
AAGTTCGTTTAAGCTGCTTTTTCGCACCGAAGGCTGACTCTCGAAGCCAA
GACGTGACCTTCAGTTTCAAGTCAGCCGTGAAGTTCAACAAGAGCGCATC
ATCTACAAACGTGCCGATGCAATGCATTTGGTGTGAGCCTCCTGTGTGGG
AGTGGAAGTACTCTATGGAGTTCCACGCGAAAAGCCGCCACTCCAAGTTC
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