mRNA_H-canaliculatus_F_contig1008.109.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1008.109.1
Unique NamemRNA_H-canaliculatus_F_contig1008.109.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1008.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1008contigH-canaliculatus_F_contig1008:7964..11552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size518
Cds size399
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1008.109.1prot_H-canaliculatus_F_contig1008.109.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1008 9455..11552 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928635.6165798-UTR-H-canaliculatus_F_contig1008:7963..80451622928635.6165798-UTR-H-canaliculatus_F_contig1008:7963..8045Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1008 7964..8045 -
1696845505.9692833-UTR-H-canaliculatus_F_contig1008:7963..80451696845505.9692833-UTR-H-canaliculatus_F_contig1008:7963..8045Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1008 7964..8045 -
1622928635.6337357-UTR-H-canaliculatus_F_contig1008:9419..94541622928635.6337357-UTR-H-canaliculatus_F_contig1008:9419..9454Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1008 9420..9454 -
1696845505.986699-UTR-H-canaliculatus_F_contig1008:9419..94541696845505.986699-UTR-H-canaliculatus_F_contig1008:9419..9454Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1008 9420..9454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928635.6484354-CDS-H-canaliculatus_F_contig1008:9454..95481622928635.6484354-CDS-H-canaliculatus_F_contig1008:9454..9548Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1008 9455..9548 -
1696845506.0017285-CDS-H-canaliculatus_F_contig1008:9454..95481696845506.0017285-CDS-H-canaliculatus_F_contig1008:9454..9548Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1008 9455..9548 -
1622928635.6654553-CDS-H-canaliculatus_F_contig1008:10677..107561622928635.6654553-CDS-H-canaliculatus_F_contig1008:10677..10756Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1008 10678..10756 -
1696845506.022417-CDS-H-canaliculatus_F_contig1008:10677..107561696845506.022417-CDS-H-canaliculatus_F_contig1008:10677..10756Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1008 10678..10756 -
1622928635.6937652-CDS-H-canaliculatus_F_contig1008:11326..115521622928635.6937652-CDS-H-canaliculatus_F_contig1008:11326..11552Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1008 11327..11552 -
1696845506.0380123-CDS-H-canaliculatus_F_contig1008:11326..115521696845506.0380123-CDS-H-canaliculatus_F_contig1008:11326..11552Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1008 11327..11552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1008.109.1

>prot_H-canaliculatus_F_contig1008.109.1 ID=prot_H-canaliculatus_F_contig1008.109.1|Name=mRNA_H-canaliculatus_F_contig1008.109.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=133bp
RYDELFVSPFKPWDISAVPGSPISGPDGLLQEVADGQSGSAVTRRSTSAV
QSWEKVPEVSSAVESARCRLEFTPAGGVKKGHFNEVFLHRRGQEPRPDCP
VLVYQSGWELEGLPRRFFTASSVRWLLFDNVS*
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mRNA from alignment at H-canaliculatus_F_contig1008:7964..11552-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1008.109.1 ID=mRNA_H-canaliculatus_F_contig1008.109.1|Name=mRNA_H-canaliculatus_F_contig1008.109.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3589bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1008:7964..11552- (Hapterophycus canaliculatus Oshoro5f female)
CGCTACGACGAACTTTTTGTTTCCCCCTTCAAGCCTTGGGACATATCTGC
TGTGCCCGGAAGTCCGATAAGCGGGCCAGACGGCCTACTGCAAGAAGTGG
CAGACGGTCAAAGCGGATCCGCCGTCACGAGGCGGTCGACCTCAGCAGTA
CAAAGCTGGGAGAAGGTGCCCGAAGTTTCCTCGGCGGTGGAAAGCGCACG
GTGCCGCTTGGAATTCACACCGGCCGGTGCGACATGGGCTAGCAGAACAG
CGGGTTGCTTGATGGCCCCATTAGGCCCGGGGGGAGCTCGGGCGAAGTGT
GACCAGTCTGTCGACTTTGGGGGGTTGTATTCTTTTGCACCAGATGTGCG
CGGGGTATGTATTACTCTGAACGCGTGACATACAGAAGCTGCTTGTCCCT
CGTTATTCTCACAACTTTCTGAGCTACGAAATGGTGCGTGATCGACACTT
CGGGAGGACCTTGGCACACTTGGGTAGAACCTGATGTTCAGGTCGACCGA
ATTCCTGCGGCCTGTCTCCACCCACGCAAACCAGTCCGGTCGACAGCCAT
ATTTGCATCTTCGTTGTGATTTATCTTGTCCTTGTTGTGCTTTTTAGGAA
CTTTCCGCAGGACGAGCCCTTGCGAAACCATGGGCAAAACTTTGGCTTTA
GAGGTACACCTTTTGTGGCGTGTACTTCTCTGGACGTACTAGTTCAACAG
GCTCTCACTCACGCCTCGAGGTATCTCGCATTACGTTTCCTCTAAAGCTT
CTCAGTTTTGCACCTTCCTCCGTCACTCGGCTATAAACGAAAGCAGGTGG
TGTAAAAAAAGGTCACTTCAATGAAGTGTTTCTTCATAGACGAGGGCAAG
AACCGAGGCCGGATTGTCCTGTTCTTTTTGTCGCTACAAATCAAGTGAGT
CGAAGAATCATGACGTTGAAGCATATCCTTTCCCAACTTCTGGAAGACAG
CGGCTGGGCTTGGCCACCTGCGCTTCTGTCAATGGCGCTGCCACTTGTTC
GTTCCTGTCCCCCTGAATACTAGCGAGACGTGTGACATGTCGTCCTAGAA
AAGAACCCGCCAAACAAACGCACAGTGAAATCAAAGAACGATAGAACGAT
GAGATGCCTGTTCTGTAGTATCGAATGGTCAGCAGTTCGTTTCAAAATCG
ATGGTAGGTCTACAGTCCGACGCGATCACCACTCGCTTTTCGGTCGTTTC
CTTCGTGACACACTCACCGTACGAGTTCATCCGCCGAACGTTGTAGAACT
CGGACAAGATGGTGAGATCAAGGAAAGGGAGGGTGACAACGATATAAGGA
AAATCTGATACAAGGTAGCATCGAGAGTAGACTAGGAGACCGCATGCCAG
CAGAAACTACGTGGGCCGCGAAAAAAATGTGGGGATATCATACCAGGTAC
AGGCATAGAGTTTGATGAGCATTAAAGACGGTGCTACATATGTATACACA
ACATGGAAGAGGAGAGGCAGGAAGAAGAGTTCGGGAGGAAAGCGTAGACC
ATGGGCCCATGGATCGCTGAAAATGATGACAATTGAGTTGAAGCAGCAAG
CCTTACGAATCCGGAATGAGTTGTTCGACTGAGGATGACGGCGATGTTGA
GATGCGCATGCGAGAACATAAGCAAATGTCCAGCAGGAGGAGATCCGGGA
AGCAAGTGGATTTGATACGGATTAGCTCGTTTCACTTCAAGTGAGGAGAA
TGCCTTCGTGGTAACCAAAGTCGTGGCGGCCAAAGAAGGGGGGGCAGAAA
CAAGTTCGAGACGTGAAACTCGACGATACAGCAGGAGCACCCGAGTGAAG
GAGTTTCTCTTGTATTGCATGGAAACACTGCTTCCACTGTTTCGACGTGA
AGCATAGACGCGAAGAGACCAACGACTAAGTGGAGCGACAAATGAATTGT
TCCCTCCGCCATCCACAAAACGTTCCACTTTTTGTTCACGAACGGAGTTT
TTGGTGGAAATCATGTCAAGCCCTGCCTACGGAAGCTTTGAGGTCGGCGG
TACCCGTATATCAGAGTGGTTGGGAGCTGGAAGGGCTTCCAAGACGCTTT
TTCACGGCCTCTTCCGTCCGGTGGCTCCTGTTCGACAACGTATCATGAAC
GAGGCTTCACGGCTTTTCCCGAAGGACGGACAGGTAAAGGCGTGTGTCAT
CTTGTTCGCACTATTCCAAAGTGGCTCTATGTAGGTATACCTTAAACGCG
CCGAAATCCTTACCGCTCCCTTGGCGAAGAGACCGCACTCGCTTTTTTCA
GCCCCCGAAATACCAAATACTCCGGAGTATGCAGAATCAAAACACGTATG
TATCCCCCTATTCAAAAGTGAACTAAACTGAACTGCAAGTCAACGACTGA
CATGTGGCGTGACATGAACACTCAAGGTAAACAGGGCCCAAAAAGGTCGT
CATGGGAAGATATGAGCCTGGCGAACACAGCAGCAGCAACCACAAAGTGT
TTCGTGAGCATGAGAACAGCTGCTGAATCTCAACTCTACCCCGTGTCTTC
ACCCCCACCCACGGCGCAACCCCTTCGATGTGCAACGTTCAGATACCTAC
TCTTGCTTACCCTGCTTTTCTGTGCATTTCTAACGTTGCCCACCGTGTGG
CTATCTTTCCGGCGGCGGAAAAATTGGGTCTGATACACGACTCTTCAAGA
TTTGGGGCCTCGTATGGGTTCCCCACACTTTTCGACATAATCTTTTACTT
CCATGGAAGTCGCATTTCGCTTCCACACGAGCTTCCCTAAACTCGTGTTG
CTTCCACGGAAGTCGTACTGGCTTCCATGGGATTGTGCGGAAGTCGTGAA
AATCTCAAAGAAGAAGCGAAAATGGCATGTGCGGACACGAGCTTCTACAA
ACTTTCAGGTGGCTTCCATTGGAACTGATGGCCTTTGATCTATCTGTGGA
AGTAAGTAAGAGTCGTGACGCCTAACATGAAAGTTGCCAAAATAGCTTTT
TCCCGCGAACTCCCGTTGTTGATGGAAGCTGTAGCTATCACGGAAGTTAT
TTTGGGATGATGTCGTCCGGTAGATATAAATGCGTTCCTCCGTGGAAGCC
CATCAACTTCCATGGAACTTACTTAAGCGGAGGCGTGTCTTTCTCACCCT
CATCCTAACCATGACCATAGGAGCTACGCCGCCGTGAATTGAAGAAGGTT
CTTGGTAGCTGTGAAGTTTGGGGTATACTTACATATCTCCAGGGAGTTGC
GTACACGACTTCCTCCTCCTCCTTGAAAATTGTAGATCATGTAATCGTAC
TTCCTTGGAAAAAGAATACAAGGTTACTTGCAAAAAGCAACACGACCAAT
GGAAGCCATGTTAGCTTTCGTGGCAGCTGCAAAACTAGCTTCCATAGAAG
CGAAGAACGTCGGCTTTCATGGACGTCCGAAACTACTTCCATGGAAGTCA
CGGATGTGCAAAGCCATCCCGCTCGCTCTTCTTGTTGTTCAAGATTGCTG
TGTTATCTGTCTGTTCAGCAACATCTCATATTTCCCCGAAACCCTGAACT
GGCACAGACTATGGCTGCGCATGCTCGCTCCTTCTTTCTGGGGTCTATAC
CGAGGAACAACAAGTTTGTGGGATGCTTGCAACAGCTGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1008:7964..11552-

>mRNA_H-canaliculatus_F_contig1008.109.1 ID=mRNA_H-canaliculatus_F_contig1008.109.1|Name=mRNA_H-canaliculatus_F_contig1008.109.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=798bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1008:7964..11552- (Hapterophycus canaliculatus Oshoro5f female)
CGCTACGACGAACTTTTTGTTTCCCCCTTCAAGCCTTGGGACATATCTGC
TGTGCCCGGAAGTCCGATAAGCGGGCCAGACGGCCTACTGCAAGAAGTGG
CAGACGGTCAAAGCGGATCCGCCGTCACGAGGCGGTCGACCTCAGCAGTA
CAAAGCTGGGAGAAGGTGCCCGAAGTTTCCTCGGCGGTGGAAAGCGCACG
GTGCCGCTTGGAATTCACACCGGCCGCGCTACGACGAACTTTTTGTTTCC
CCCTTCAAGCCTTGGGACATATCTGCTGTGCCCGGAAGTCCGATAAGCGG
GCCAGACGGCCTACTGCAAGAAGTGGCAGACGGTCAAAGCGGATCCGCCG
TCACGAGGCGGTCGACCTCAGCAGTACAAAGCTGGGAGAAGGTGCCCGAA
GTTTCCTCGGCGGTGGAAAGCGCACGGTGCCGCTTGGAATTCACACCGGC
CGGTGGTGTAAAAAAAGGTCACTTCAATGAAGTGTTTCTTCATAGACGAG
GGCAAGAACCGAGGCCGGATTGTCCTGTTCTGTGGTGTAAAAAAAGGTCA
CTTCAATGAAGTGTTTCTTCATAGACGAGGGCAAGAACCGAGGCCGGATT
GTCCTGTTCTCGTATATCAGAGTGGTTGGGAGCTGGAAGGGCTTCCAAGA
CGCTTTTTCACGGCCTCTTCCGTCCGGTGGCTCCTGTTCGACAACGTATC
ATGACGTATATCAGAGTGGTTGGGAGCTGGAAGGGCTTCCAAGACGCTTT
TTCACGGCCTCTTCCGTCCGGTGGCTCCTGTTCGACAACGTATCATGA
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