mRNA_H-canaliculatus_F_contig10079.107.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10079.107.1
Unique NamemRNA_H-canaliculatus_F_contig10079.107.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10079.107.1 vs. uniprot
Match: A0A6H5JCV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV2_9PHAE)

HSP 1 Score: 157 bits (397), Expect = 6.330e-40
Identity = 115/166 (69.28%), Postives = 123/166 (74.10%), Query Frame = 1 
Query:   31 GRAIGEDTMLWVTETDLGG--GIQRTLLQKRVGEFDGREGQDAIPHWVMACVLHGEFHTKEQPKVAFFLAPWVPPERNS---LPAPSSTSRXXXXXXXXXXXXXGG-DAGRPASFREPXXXXXXXXXXXXXXXX--------------SQVSQRFTAPAQMLVSKV 468
            GRAIG+DTMLWVTE DLGG  GIQRTLLQKRVGEFDGREGQDAIP+WVMACVLHGEFHTKEQ K+AFFLAPW+PPER     L  PS+  R       XXXXXX   DA +PAS    XXXXXXXXXXXXXXXX              +Q+SQRFTAP QMLVSKV
Sbjct:  983 GRAIGDDTMLWVTEMDLGGHGGIQRTLLQKRVGEFDGREGQDAIPNWVMACVLHGEFHTKEQDKMAFFLAPWIPPERGGGGGLSLPSTPHRQPQGKRGXXXXXXXXXDARKPASLXXXXXXXXXXXXXXXXXXXXXXXXXVGAGGVPSNQMSQRFTAPVQMLVSKV 1148
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BLAST of mRNA_H-canaliculatus_F_contig10079.107.1 vs. uniprot
Match: A0A6H5JF83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF83_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.940e-7
Identity = 40/68 (58.82%), Postives = 42/68 (61.76%), Query Frame = -2 
Query:  489 CGSTTRSPQSTSTKSSGASREGPGTLPAPXXXXXXXXXXSPLAVAGPFSPSAGCSSTTVLSRCWRRSS 692
            CGS+TRSPQSTSTKSSG SREG    P       XXX   P  V     P +GC  TTVLSRCW RSS
Sbjct:   23 CGSSTRSPQSTSTKSSGVSREGRIITPPAASPPPXXXLPLPPVVXXXXXPPSGC--TTVLSRCWWRSS 88
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10079.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCV2_9PHAE6.330e-4069.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF83_9PHAE1.940e-758.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10079contigH-canaliculatus_F_contig10079:2142..5104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionProtein of unknown function DUF3337
Ec32 orthologEc-06_007550.1
Hectar predicted targeting categoryother localisation
Exons3
Model size797
Cds size795
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10079.107.1prot_H-canaliculatus_F_contig10079.107.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10079 2142..5104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928635.2446194-CDS-H-canaliculatus_F_contig10079:2141..22331622928635.2446194-CDS-H-canaliculatus_F_contig10079:2141..2233Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10079 2142..2233 -
1696845505.8647835-CDS-H-canaliculatus_F_contig10079:2141..22331696845505.8647835-CDS-H-canaliculatus_F_contig10079:2141..2233Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10079 2142..2233 -
1622928635.3082538-CDS-H-canaliculatus_F_contig10079:2885..31231622928635.3082538-CDS-H-canaliculatus_F_contig10079:2885..3123Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10079 2886..3123 -
1696845505.8748372-CDS-H-canaliculatus_F_contig10079:2885..31231696845505.8748372-CDS-H-canaliculatus_F_contig10079:2885..3123Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10079 2886..3123 -
1622928635.3255708-CDS-H-canaliculatus_F_contig10079:4639..51041622928635.3255708-CDS-H-canaliculatus_F_contig10079:4639..5104Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10079 4640..5104 -
1696845505.8860686-CDS-H-canaliculatus_F_contig10079:4639..51041696845505.8860686-CDS-H-canaliculatus_F_contig10079:4639..5104Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10079 4640..5104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10079.107.1

>prot_H-canaliculatus_F_contig10079.107.1 ID=prot_H-canaliculatus_F_contig10079.107.1|Name=mRNA_H-canaliculatus_F_contig10079.107.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=265bp
ERGGGGGGGNGRAIGEDTMLWVTETDLGGGIQRTLLQKRVGEFDGREGQD
AIPHWVMACVLHGEFHTKEQPKVAFFLAPWVPPERNSLPAPSSTSRQQQA
RRGGGGGGAGGDAGRPASFREPRGGVGGSAAGGGGVPASQVSQRFTAPAQ
MLVSKVMAYVLSHEDLRQHLESTVVEEHPAEGENGPATASGDGGGGGGRR
GGGAGRVPGPSREAPEDLVEVLCGDRVVEPHLYIGAIQQHIWNPKASGTL
FLHYRSRRRTAVER*
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mRNA from alignment at H-canaliculatus_F_contig10079:2142..5104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10079.107.1 ID=mRNA_H-canaliculatus_F_contig10079.107.1|Name=mRNA_H-canaliculatus_F_contig10079.107.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2963bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10079:2142..5104- (Hapterophycus canaliculatus Oshoro5f female)
GAAAGGGGGGGGGGGGGGGGAGGGGGAAACGGGCGGGCAATAGGCGAGGA
CACGATGCTGTGGGTGACAGAGACGGACCTCGGGGGAGGCATCCAGAGGA
CGCTGCTGCAGAAGAGGGTCGGGGAGTTCGATGGCAGGGAGGGGCAAGAC
GCCATCCCGCACTGGGTGATGGCGTGCGTGCTGCACGGGGAGTTCCACAC
CAAGGAGCAACCGAAGGTGGCCTTTTTCCTCGCCCCCTGGGTACCGCCGG
AGAGGAACAGCCTCCCGGCGCCGTCTAGCACCTCCCGGCAGCAGCAAGCA
AGGAGAGGCGGCGGCGGCGGTGGGGCCGGGGGAGACGCCGGGAGGCCCGC
CTCGTTCCGGGAGCCTCGCGGGGGTGTTGGGGGGAGTGCGGCGGGAGGGG
GTGGCGTGCCCGCCAGCCAAGTGTCCCAGAGATTTACGGCTCCCGCACAG
ATGCTCGTCTCCAAGGTGCGTGGGTGTTGCGCTGGAAGTCAAGTACAGGT
TCATGCTATAATGGGTTACGCTATGCCGTATGCTGGAGGTCTTCGCAGGC
AGGCAGCCCAGCCGTGTTCACGGAGAAGCATGTGATCGTGCTCGGCTGGC
GCTGTCACGAACTTGCCTGTACGTCTGCCTGCCTGCTTGCCTGTGTTAAA
TCCATGTTCCTGTCTTTGAGCTTGAGGCTGCACGTAGAAGGGCGAGAAGT
GTTGATTGGTGTTATTGTTTACGCTGACGCTTATCCGCAAGCCGCTTGTG
CCTGGTATGTAGTAGACTACGGTCGAGCAAGAAATGGTGGCGAGGGCTGT
ATAGATAAGAACGTTAGCCTTCCGCGTACAGGCGCTGTCCCTCCAACCTT
CCAATGTTTTGTCTTACCAGCAAGACGTGCGGAAATGTTCGCCGATGCTT
TTCACGGGTAGATAAATTGCCATGGCTGCTTGTTCGCAAGAGCCCCCCCC
CCAGTCTCCCTGTGTTGTACTGCGGCCATCATCTGCGGTTTGAGCCGTTC
CAGAGCCTAGCAGCGTTCGCCGCACGTAGTCCGAACCTACCGTAGGGCCT
AATAGAAGGCGGGGCCACGAATAAGGCAGTTACCTTGTTCAGGCACCACC
GCCCTGTCTGAGGCGTTTTCTGCCCAACGCAAACGCCGTATCGTACAAGG
CGGTTACCATCCCCGCAGTAACACTTACGGAAAGGAGCGTTCCCACTTAA
TCTTGCCCATCGCCTTGCACAAGGCAAGCTGCGCTGCAAAGGGTGGGTAC
GCCTCCGGCAGCGATAAAAACCGTAACATGGTTACCTTCCTTACCCGTAT
CCAAGGGCCGGGCGACCCGGAAAGAGCTAGACTTTTTGTTTCATCTGCAC
CCCTCGCGTGCGGAATTTGTTTTCTTCTCGATCCATTTTGCCGGTGTTGG
CTTGTACAAGCGTTGTCTTAAATTTCTTTCGTGACAAATGAAGACATGAT
TTGTGGAATAATTCCTTGTTCTTCGCATGATCACCGGAGTTTATGCCTGT
GACACCAGGCGTCGTCTCTGACCATCACGGGGCTCGCACGACGTTTGTCA
TACCGGTTCTGCTAGTGGACGGGGTAAACATGTTTTACAAATGGCTGGAT
GTTGTCGGACTCGTTCTACATGAGAGCTTGGTTCGTGACCATAATGCTCC
GCTCTACGACGCGCGGAAGAGGCAACAGCGACCACCATATAACCTCCCAC
CTTCGTACGTCCTCAACAAGGCGGTCACCGCCCTATTGAGGCAATATCAA
ATCCTGAAAAAGACTGATCATCCTGTCCTGTTCACGCAAAGGCCGCTGCC
CGATGTACGAGGCGGTACTTCTCGCTAGCCTCACCACCGACTTATGTCGG
GCCCTCTGCTGTACGTTGGTTCCCAAATGCCGGGATTTGTTTGTGAGAGG
CCGGCGGTCCGCCTTCCTCCGCCCGCCGCCGCCCCCTGCTTCCCTTTTGA
TCCCGATCCGCCGGACCGCTGTTCCCTCCAGGTGATGGCATACGTCCTCT
CGCACGAGGATCTACGCCAGCACCTGGAGAGCACCGTAGTGGAAGAACAC
CCGGCAGAAGGAGAAAACGGCCCCGCTACCGCGAGCGGAGACGGCGGCGG
TGGCGGCGGCCGCCGAGGGGGTGGTGCCGGAAGGGTGCCGGGCCCTTCAC
GAGAGGCGCCGGAAGACTTGGTGGAAGTGCTCTGCGGTGACCGGGTGGTT
GAACCACACTTGTATATCGGTGAGACGGAGGGGGGAGGGAGGAGGGCGAG
AAAATACTAGGCAAGACAAGACCCGGCAGAGCAAGAATTGGCGATCGTAT
CTTGCTTCCGCGCGCGCATGCCGGCCTCGAATGGCGCGCTCAACAGCATT
TCCCTCCAGTATTCTTCGCGCCCCCTCGTGTCAAGTTTGATAACCTGTTG
TATGTTTCTCCTGTTGTCTTGTGGTACTTCTGTGGCTTCTGTGTCGTGTC
TTGCATCGGCGTCCCCCGTAAGATGTGCGTTTTCCGCTTGATGAATGGGG
TCTGCCGTCCTACGCCCACCCTCCAGCAGTTTTTCGATTGAGAATACGCC
GCCGCCGTTGTGAAAACTCGCTTTGCCGACGGGAGCACGCATTCTTCTTC
TACCTTGAGCATTCACCTCGGATGATCATATGGTATTATCCGAGAGTAGC
ACGGGCTGAAATTACGTGGACGTGGACACGGTGTGGGCGGACCTGGCCCG
GGTACAGTGACGGCATCTCTCCTTGTCCACTCTTCCTCTCTTTTCCCGAC
CACCCTCTCTCATCCACGGGCTCCGAAGCTTCTCGCGCTCCGCGCTTTTC
CTCGTTGCGGCCGCTCGTTTTCCGTGACAACTCAAAATGGACAATCCAAA
CCATGATTCTCGTACCCCCAGGAGCGATCCAGCAGCATATTTGGAACCCC
AAGGCGTCTGGAACTCTCTTCTTGCACTACCGCTCCCGGCGTAGAACAGC
AGTGGAAAGATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10079:2142..5104-

>mRNA_H-canaliculatus_F_contig10079.107.1 ID=mRNA_H-canaliculatus_F_contig10079.107.1|Name=mRNA_H-canaliculatus_F_contig10079.107.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1590bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10079:2142..5104- (Hapterophycus canaliculatus Oshoro5f female)
GAAAGGGGGGGGGGGGGGGGAGGGGGAAACGGGCGGGCAATAGGCGAGGA
CACGATGCTGTGGGTGACAGAGACGGACCTCGGGGGAGGCATCCAGAGGA
CGCTGCTGCAGAAGAGGGTCGGGGAGTTCGATGGCAGGGAGGGGCAAGAC
GCCATCCCGCACTGGGTGATGGCGTGCGTGCTGCACGGGGAGTTCCACAC
CAAGGAGCAACCGAAGGTGGCCTTTTTCCTCGCCCCCTGGGTACCGCCGG
AGAGGAACAGCCTCCCGGCGCCGTCTAGCACCTCCCGGCAGCAGCAAGCA
AGGAGAGGCGGCGGCGGCGGTGGGGCCGGGGGAGACGCCGGGAGGCCCGC
CTCGTTCCGGGAGCCTCGCGGGGGTGTTGGGGGGAGTGCGGCGGGAGGGG
GTGGCGTGCCCGCCAGCCAAGTGTCCCAGAGATTTACGGCTCCCGCACAG
ATGCTCGTCTCCAAGGAAAGGGGGGGGGGGGGGGGAGGGGGAAACGGGCG
GGCAATAGGCGAGGACACGATGCTGTGGGTGACAGAGACGGACCTCGGGG
GAGGCATCCAGAGGACGCTGCTGCAGAAGAGGGTCGGGGAGTTCGATGGC
AGGGAGGGGCAAGACGCCATCCCGCACTGGGTGATGGCGTGCGTGCTGCA
CGGGGAGTTCCACACCAAGGAGCAACCGAAGGTGGCCTTTTTCCTCGCCC
CCTGGGTACCGCCGGAGAGGAACAGCCTCCCGGCGCCGTCTAGCACCTCC
CGGCAGCAGCAAGCAAGGAGAGGCGGCGGCGGCGGTGGGGCCGGGGGAGA
CGCCGGGAGGCCCGCCTCGTTCCGGGAGCCTCGCGGGGGTGTTGGGGGGA
GTGCGGCGGGAGGGGGTGGCGTGCCCGCCAGCCAAGTGTCCCAGAGATTT
ACGGCTCCCGCACAGATGCTCGTCTCCAAGGTGATGGCATACGTCCTCTC
GCACGAGGATCTACGCCAGCACCTGGAGAGCACCGTAGTGGAAGAACACC
CGGCAGAAGGAGAAAACGGCCCCGCTACCGCGAGCGGAGACGGCGGCGGT
GGCGGCGGCCGCCGAGGGGGTGGTGCCGGAAGGGTGCCGGGCCCTTCACG
AGAGGCGCCGGAAGACTTGGTGGAAGTGCTCTGCGGTGACCGGGTGGTTG
AACCACACTTGTATATCGGTGATGGCATACGTCCTCTCGCACGAGGATCT
ACGCCAGCACCTGGAGAGCACCGTAGTGGAAGAACACCCGGCAGAAGGAG
AAAACGGCCCCGCTACCGCGAGCGGAGACGGCGGCGGTGGCGGCGGCCGC
CGAGGGGGTGGTGCCGGAAGGGTGCCGGGCCCTTCACGAGAGGCGCCGGA
AGACTTGGTGGAAGTGCTCTGCGGTGACCGGGTGGTTGAACCACACTTGT
ATATCGGAGCGATCCAGCAGCATATTTGGAACCCCAAGGCGTCTGGAACT
CTCTTCTTGCACTACCGCTCCCGGCGTAGAACAGCAGTGGAAAGATAGGA
GCGATCCAGCAGCATATTTGGAACCCCAAGGCGTCTGGAACTCTCTTCTT
GCACTACCGCTCCCGGCGTAGAACAGCAGTGGAAAGATAG
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