mRNA_H-canaliculatus_F_contig11017.941.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig11017.941.1
Unique NamemRNA_H-canaliculatus_F_contig11017.941.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig11017.941.1 vs. uniprot
Match: D8LKQ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKQ0_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.260e-49
Identity = 91/100 (91.00%), Postives = 95/100 (95.00%), Query Frame = 3 
Query:  519 QADKFGGIPSMYVPLTEFESMKAAGQEAREGDDLAQIVRRVKDYRPEREFVVVFQASGVMGADIVRPSVSPPEMAKHVVKSDGVSTMPSASGLDGVIDVN 818
            + DKFGGIPSMYVPLTEFESMKAAGQEA E DDL QIVRRVKDYRPEREFVVVFQA+GVMGADIVRP+VSPPEMAKHVVKSDGVSTMPS +GLDGVIDVN
Sbjct:  190 ETDKFGGIPSMYVPLTEFESMKAAGQEAGEEDDLGQIVRRVKDYRPEREFVVVFQAAGVMGADIVRPNVSPPEMAKHVVKSDGVSTMPSDTGLDGVIDVN 289
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BLAST of mRNA_H-canaliculatus_F_contig11017.941.1 vs. uniprot
Match: A0A836CCX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCX0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.570e-17
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = 3 
Query:  525 DKFGGIPSMYVPLTEFESMKAAGQEAREGDDLAQIVRRVKDYRPEREFVVVFQASGVMGADIVRPSVSPPEMAKHVVKSDGVS----TMPSASGLDGVIDV 815
            +K GGIPSM+ PL EFE+M        E +DL QI++R+K Y P +EFVVVFQA GV GADI  PS+ PP++AK V  +  +     T   A G DG + +
Sbjct:   85 EKLGGIPSMFCPLHEFEAMVPGAAAKGEHNDLDQIIQRIKQYDPTKEFVVVFQAGGVCGADICSPSIPPPDVAKQVEAAIDIEAAARTQRVAMGADGRLGI 185
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BLAST of mRNA_H-canaliculatus_F_contig11017.941.1 vs. uniprot
Match: W7TWP7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWP7_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 6.330e-14
Identity = 48/98 (48.98%), Postives = 62/98 (63.27%), Query Frame = 3 
Query:  519 QADKFGGIPSMYVPLTEF-ESMKAA--GQEAREGDDLAQIVRRVKDYRPEREFVVVFQASGVMGADIVRPSVSPPEMAKHVVKSDGVSTMPSASGLDG 803
            + D+  G+PSMYV L  + ES +AA  G    E  DL QI+ RV  Y PER FVVVFQA G+MGADIV P+VSPP+MA+ ++  +     P    +DG
Sbjct:  123 EIDRVSGVPSMYVSLARWMESGQAAKDGPAQAERQDLQQILDRVISYEPERAFVVVFQAHGLMGADIVTPNVSPPDMAEKLMAKES-DLAPQTIDVDG 219
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BLAST of mRNA_H-canaliculatus_F_contig11017.941.1 vs. uniprot
Match: A0A7S2WW30_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW30_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.020e-12
Identity = 43/101 (42.57%), Postives = 63/101 (62.38%), Query Frame = 3 
Query:  504 LTPILQADKFGGIPSMYVPLTEFESMK---AAGQEAREGDDLAQIVRRVKDYRPEREFVVVFQASGVMGADIVRPSVSPPEMAKHVVKSDGVS-TMPSASG 794
            +T   ++DK+G IPSMYVP  + ++ +   AAG+E+       QI  R++ Y PEREFVVVF A G+MG D+V P + PPE+ +      G + T P+A+G
Sbjct:   99 VTAATESDKYGSIPSMYVPEAQIKAGQINLAAGEES----SFDQIASRLESYDPEREFVVVFHAEGLMGTDVVTPCIPPPEVCRSRRMLKGYTLTNPNANG 195
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BLAST of mRNA_H-canaliculatus_F_contig11017.941.1 vs. uniprot
Match: A0A0G4ERJ3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ERJ3_VITBC)

HSP 1 Score: 70.9 bits (172), Expect = 3.600e-10
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 3 
Query:  519 QADKFGGIPSMYVPLTEFESMKAAGQEAREGDDLAQIVRRVKDYRPEREFVVVFQASGVMGADIVRPSVSPPEMAKHVVKSDGVSTMPSA 788
            +A K    P+MY P  +F S KA  +E  E   LAQ+ RR+  Y P +EFVVVFQ+SG+MGADIV+P+++P E A+ + K +   T P +
Sbjct:  152 KATKMDVAPTMYAPAEKF-SKKAGSRE--EESHLAQVRRRLDSYDPHKEFVVVFQSSGLMGADIVKPNMAPAEAAR-IYKEENNLTQPDS 237
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BLAST of mRNA_H-canaliculatus_F_contig11017.941.1 vs. uniprot
Match: A0A7S2ZY89_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZY89_9RHOD)

HSP 1 Score: 59.7 bits (143), Expect = 6.530e-7
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 3 
Query:  540 IPSMYVPLTEFESMKAAGQEAREGDDLAQIVRRVKDYRPEREFVVVFQASGVMGADIVRP 719
            +PSMYVP+ +    ++A +   +G D+  I  RV  Y PE++FVVVF+ +GVMGADIV P
Sbjct:   25 VPSMYVPMDKLR--ESASRRPSQGGDMKHITDRVARYDPEKQFVVVFECNGVMGADIVTP 82
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BLAST of mRNA_H-canaliculatus_F_contig11017.941.1 vs. uniprot
Match: A0A7S3EJF2_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EJF2_9RHOD)

HSP 1 Score: 57.4 bits (137), Expect = 4.690e-6
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 3 
Query:  540 IPSMYVPLTEFESMKAAGQEAREGDDLAQIVRRVKDYRPEREFVVVFQASGVMGADIV 713
            +PSMYVP+ +    ++A +   +G D+  I  RV  Y PE++FVVVF+ +GVMGADIV
Sbjct:  114 VPSMYVPMDKLR--ESASRRPSQGGDMKHITDRVARYDPEKQFVVVFECNGVMGADIV 169
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig11017.941.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LKQ0_ECTSI1.260e-4991.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CCX0_9STRA2.570e-1747.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TWP7_9STRA6.330e-1448.98Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2WW30_9STRA3.020e-1242.57Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4ERJ3_VITBC3.600e-1045.56Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S2ZY89_9RHOD6.530e-748.33Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S3EJF2_9RHOD4.690e-648.28Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig11017contigH-canaliculatus_F_contig11017:2..2042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.5
Seed ortholog evalue2.4e-38
Seed eggNOG ortholog2880.D8LKQ0
EggNOG OGs2F0BR@1,2T1HY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1562
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig11017.941.1prot_H-canaliculatus_F_contig11017.941.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig11017 550..1301 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928778.0686114-UTR-H-canaliculatus_F_contig11017:1..5491622928778.0686114-UTR-H-canaliculatus_F_contig11017:1..549Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11017 2..549 +
1696845560.3682575-UTR-H-canaliculatus_F_contig11017:1..5491696845560.3682575-UTR-H-canaliculatus_F_contig11017:1..549Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11017 2..549 +
1622928778.1246789-UTR-H-canaliculatus_F_contig11017:1301..20421622928778.1246789-UTR-H-canaliculatus_F_contig11017:1301..2042Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11017 1302..2042 +
1696845560.4036014-UTR-H-canaliculatus_F_contig11017:1301..20421696845560.4036014-UTR-H-canaliculatus_F_contig11017:1301..2042Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig11017 1302..2042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928778.0864549-CDS-H-canaliculatus_F_contig11017:549..7011622928778.0864549-CDS-H-canaliculatus_F_contig11017:549..701Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11017 550..701 +
1696845560.3826823-CDS-H-canaliculatus_F_contig11017:549..7011696845560.3826823-CDS-H-canaliculatus_F_contig11017:549..701Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11017 550..701 +
1622928778.1063488-CDS-H-canaliculatus_F_contig11017:1180..13011622928778.1063488-CDS-H-canaliculatus_F_contig11017:1180..1301Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11017 1181..1301 +
1696845560.3932135-CDS-H-canaliculatus_F_contig11017:1180..13011696845560.3932135-CDS-H-canaliculatus_F_contig11017:1180..1301Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig11017 1181..1301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig11017.941.1

>prot_H-canaliculatus_F_contig11017.941.1 ID=prot_H-canaliculatus_F_contig11017.941.1|Name=mRNA_H-canaliculatus_F_contig11017.941.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=91bp
MYVPLTEFESMKAAGQEAREGDDLAQIVRRVKDYRPEREFVVVFQASGVM
GADIVRPSVSPPEMAKHVVKSDGVSTMPSASGLDGVIDVN*
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mRNA from alignment at H-canaliculatus_F_contig11017:2..2042+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig11017.941.1 ID=mRNA_H-canaliculatus_F_contig11017.941.1|Name=mRNA_H-canaliculatus_F_contig11017.941.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2041bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11017:2..2042+ (Hapterophycus canaliculatus Oshoro5f female)
CTCACTGTTTTGAACTCAACAGAAGCCTCGGGGTACGCCTCACACGACGT
ACCTCAGGAGGTGTTCTAACGGTGTTGTTATGTTTTCTTTAAAAAACTGA
TTAACTGATCACGGATATCAAAGCGCGCAAGAGACGGTTATGGTCGGTCG
GTCTGAAGGCAAATGGCGGACGAGTGTTGGGCATCGATCATAAAGCGCAA
GAGCATTTCTGCGAGACGATCGTGGTGTGATGTCTGTCGAGTAAAACGCC
TGAGTGGCGACCCATCTGTCGCACACGGTTGCCCCAACCTCAGTCTCGTG
GAAATGTGATCCATCAAGTGCTTTCAGGCTCCTCACGATGAAGCAAACCC
AAACATGCCACAAAAAGTCAACAGCGTCCAGGCAGAAACTGATATTGCGC
GAACCTACCAAAGCCAATACTTATTCCCACGGCTGGATGGAAACCTTCTC
AAACCAAATTGCAAGTGGGGCGTGCAACACATCGGCCGCATACACGCCCA
TGCTTAACCCCTATTCTGCAGGCGGATAAATTCGGCGGCATCCCCTCCAT
GTACGTGCCCTTAACGGAGTTCGAGAGCATGAAAGCAGCGGGCCAGGAGG
CGAGGGAAGGGGATGACCTTGCGCAGATCGTGAGGCGGGTCAAGGACTAC
CGCCCTGAGCGGGAATTTGTTGTGGTGTTCCAAGCCTCCGGGGTAATGGG
GTAAGTTTCAAGTTGTCGACTACACGGTACAAAGTCTAGATCTGGAAAAA
TTCAGGTTCATCCCTCCTGTGTGTCTTGTTGAAGATGCATTCGAAAAGCA
CGTCGAGGTTTCCCGACTCTTGAAGAAGGCTGCACGGCACAGAGGAGCAG
CTTGACGGCCTTTCTCTCGCTTCGTGGTACTGAGATACCCGTACACTTGG
CGTGATGCCCATCAGAGGTGGGAACATGCCGCTCGTCCCTTGTACTTCCC
AAACGGTTTCATGGGTCTCTGCTGTTCCTTTTTGCTTTTGACTTCACTGA
GTCACCTTGTGAATTACCTCGTATTGGTTTTTGGTGTGTTTTACTTTGGA
CTCCGCCGGCACGAACCTGATGCAGAGGATTAGCTGTTGTTGTCTTCTCG
ATCCTGCAGTCCGAACGCTGCGTCACATTCCCTGCTCATTTGTATCGTTA
TTTTCCGTCTTTTTGATTGTGTGATGCAGAGCGGACATCGTACGGCCAAG
CGTGTCGCCCCCGGAGATGGCGAAACACGTCGTGAAGTCAGACGGAGTAT
CCACCATGCCAAGTGCTTCTGGCTTGGACGGCGTAATCGACGTCAACTAG
ATCGTCAGACGCAGGAACCACCTAGACTGACACGCGATTCTTGTCAGAGG
CGTCCGGACCTCTAAACGTACGTGAAGAGGGGGAAGGAGTGGCAGCCTCT
CTTGGCAAATGAGGAGGCGGGGGGGTACCGCCAAGTGTTGGGTGTGCGCC
GGACGGAAGTTGTTCTGTACGCGGCGGACTGCTTTGAAGACGGCGTGTTG
CAGCAAGTTTTGCTTTCCTGTGGCTCGAATGGAGGTCTTTCACGTTTCTC
GGTGGCACTGATGCCTGATTTTTGTTGTCAATTTGAGTACCTTGATCACG
GTATCATCTTTCCAAACGTCCATTTAAGATCGTTCCCTTATCCCACGGCT
GCACTAAATACTATGCCTGGGTAGACGAGAACCACGAAGTGGTACTATTT
CCCACTCAATAATGCCGTAGGCGCCACTCTCTACTCGTGCGCTTCCAATC
GTCTTTCCTATGAACACGCATCCAATGAAATTGATTTCAAGGGATGAGCT
GCCCAAGCTCGTTGGCGCAACATTTGTCGGATTCTCTATACCATATCCTC
GTGTCAATTACCACCTGCGTTGTGAGTCCCAGCCCGCACGCGCAGCATGA
TTCTATCACTATCTCCCTTTTGCATTTCGTCCGACTCACATGCCGCTCGG
TGAACATCGGGTCCGTGTCCAAACAAGCGACGTTCGCAACATCTACCGTT
TAGCATTAAGGGGAAATGAGTCACGAGGAGGCGCGCTGCCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig11017:2..2042+

>mRNA_H-canaliculatus_F_contig11017.941.1 ID=mRNA_H-canaliculatus_F_contig11017.941.1|Name=mRNA_H-canaliculatus_F_contig11017.941.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=546bp|location=Sequence derived from alignment at H-canaliculatus_F_contig11017:2..2042+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTACGTGCCCTTAACGGAGTTCGAGAGCATGAAAGCAGCGGGCCAGGA
GGCGAGGGAAGGGGATGACCTTGCGCAGATCGTGAGGCGGGTCAAGGACT
ACCGCCCTGAGCGGGAATTTGTTGTGGTGTTCCAAGCCTCCGGGGTAATG
GGATGTACGTGCCCTTAACGGAGTTCGAGAGCATGAAAGCAGCGGGCCAG
GAGGCGAGGGAAGGGGATGACCTTGCGCAGATCGTGAGGCGGGTCAAGGA
CTACCGCCCTGAGCGGGAATTTGTTGTGGTGTTCCAAGCCTCCGGGGTAA
TGGGAGCGGACATCGTACGGCCAAGCGTGTCGCCCCCGGAGATGGCGAAA
CACGTCGTGAAGTCAGACGGAGTATCCACCATGCCAAGTGCTTCTGGCTT
GGACGGCGTAATCGACGTCAACTAGAGCGGACATCGTACGGCCAAGCGTG
TCGCCCCCGGAGATGGCGAAACACGTCGTGAAGTCAGACGGAGTATCCAC
CATGCCAAGTGCTTCTGGCTTGGACGGCGTAATCGACGTCAACTAG
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