mRNA_H-canaliculatus_F_contig1100.928.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1100.928.1 vs. uniprot
Match: D7FTY6_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTY6_ECTSI) HSP 1 Score: 639 bits (1649), Expect = 3.190e-219 Identity = 394/602 (65.45%), Postives = 456/602 (75.75%), Query Frame = 2
Query: 692 MASLHGMIEARDDAAQKLKREGDRLRREMKRLRVHGEEHKGQENAMIVAATQNSRLLKLLEQEELKREEVLKERDEALAEVNELKHRVRTSDERHAERTSGLEIKLIKAIGENLALQEKYSGTDERIETLETELESSKKQAAFNGETTKTELSALRQGHYDVLSQLQESSDELQRTXXXXXXXGEELEVCRQQSAELEMRLRIVQSDLSSAEKAAREQEMAADEASRLAEARLSKELALSEILHNKMASMSRTILRLVERHKNLQAEVRRHQAGEARLLDQIARAGERELRLRQKIVRLESSSTLEVTHKRLHSALDTFNSQMTKPPLSAALTRTNTALAAASTAGGGMASDVGDALRRRRQLLSKYTAFFRLVAGHHANVPGQARRAVEELALSDCGLDDADVDGVIDAVRSCPCLAVLDLSLNYIGDAGAASIAGALRQASCGLKRVDLRGNQMTMEGVRMLARALEENTRRGVSHVYVHSEGRIDALGR-KSDRVSMVGDQQKRSRSMNTLSQDALGSFFSVVVVDARDNAPRKAVTTDTALHAARRSK---SHIALTMSTDDLKGKKGSVKPGRKSKSSVTVARQSQVRDFMTKVAYH 2485
M SLHG+IE +D+A QK KRE DRLRRE+KRL V EE +GQENAMIVAATQNSRLLKLLEQEELKRE VL ERDEALAEV+ELKHRVRTSDE+HA+RTSGLE+KLIKAIGENLAL+EKYS TDE+IETL ELES++KQA F+ ET +T LS LRQ Y V+S+LQES DELQR G+EL VCRQQ+AELEMRL +QSDL+S E+ + E+E AADE SRLA+ARL KE++LSE LHNK+ASMSRTILRLVERHK+L+A+V +H+A EARL DQI A +RE+R +QK+VRL+SS T+E THKRL++ALD FNSQMTKPPL AA N A G GDALR RRQLLS + A F LVAG AR A+ EL LSDCGLDD DV GV++ SCP L VL+LS+NYIGDAGAAS+A LR ASCGL+R+DL NQM+MEGVR+LA+ALEEN RGVSHVYVHSEGRIDALGR K D+ V K S+ QDALG FFSVV+VDARDN P+ A DTAL ARR K HIA K K +KP R S +S+ +ARQSQVRDFMTKVAY+
Sbjct: 1 MGSLHGVIETKDNAVQKHKRESDRLRREIKRLHVEREERQGQENAMIVAATQNSRLLKLLEQEELKRESVLTERDEALAEVSELKHRVRTSDEQHAKRTSGLEVKLIKAIGENLALKEKYSSTDEKIETLTKELESARKQAKFDKETAETALSTLRQSQYRVISELQESRDELQRYKDQAETKGDELAVCRQQNAELEMRLGTLQSDLNSMERTSSEREAAADEDSRLAQARLEKEISLSESLHNKVASMSRTILRLVERHKDLKAQVVKHEAEEARLGDQIEEARKREVRFQQKVVRLKSSLTVETTHKRLYAALDKFNSQMTKPPLPAANGGGNLPHDEALAIGPSTQRIKGDALRCRRQLLSNHMALFGLVAGRDDGT--SARHALNELDLSDCGLDDFDVHGVMELACSCPRLEVLNLSMNYIGDAGAASLATVLRLASCGLRRLDLTCNQMSMEGVRVLAKALEENCSRGVSHVYVHSEGRIDALGREKEDKCQSV----KERNSVPDEEQDALGMFFSVVIVDARDNHPQPAGNPDTALPLARRGKRQIGHIAAARGLIGSKKKGSGIKPERNSHNSL-LARQSQVRDFMTKVAYN 595
BLAST of mRNA_H-canaliculatus_F_contig1100.928.1 vs. uniprot
Match: A0A835Z915_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z915_9STRA) HSP 1 Score: 166 bits (420), Expect = 4.120e-39 Identity = 181/617 (29.34%), Postives = 274/617 (44.41%), Query Frame = 2
Query: 560 FYNAEILRQQ*LFHFPLMIRSTQVLLLSKQNQGLREGIDAVEKEMASLHGMIEARDDAAQKLKREGDRLRREMKRLRVHGEEHKGQENAMIVAATQNSRLLKLLEQEELKREEVLKERDEALAEVNELKHRVRTSDERHAERTSGLEIKLIKAIGENLALQEKYSGTDERIETLETELESSKKQAAFNGETTKTELSALRQGHYDVLSQLQESSDELQRTXXXXXXXGEELEVCRQQSAELEMRLRIVQSDLSSAEKAAREQEMAADEASRLAEARLSKELALSEILHNKMASMSRTILRLVERHKNLQAEVRRHQAGEARLLDQIARAGERELRLRQKIVRLESSSTLEVTHKRLHSALDTFNSQMTKPPLSAALTRTNTALAA------ASTAGGGMASDVGDALRR----RRQLLS---KYTAFFRLVAGHHANVPGQARRAVEELA-------------------LSDCGLDDADVDGVIDAVR------SCPCLAVLDLSLNYIGDAGAASIAGALRQASCGLKRVDLRGNQMTMEGVRMLARALEENTRRGVSHVYVHSEGRIDALGRKSDRVSMVGDQQKRSRSMNTLSQDALG--SFFSVVVVDARDNA 2290
F ++LR + L + +V L++ QN LR+ +A E EMA+L ++ ++ A ++ +R R +KRL+ E + G+E A+ ++A Q++RLLKLLEQEE+KRE +L+E+D A++EV ELK RV + HAE+ L+++L KA+ + A E ++G L + A E +L + L+ AAR+ + A E + LA+AR + A E L ++ + +LR + +L S++++E T +RLH ALD FN+QM P + + GG+ + AL++ +RQ+LS ++ A + +A VP + A L +CG+ D+D+D V D + + P L V DLS N+I D GA+ +A LR C +KR+DLR NQ+TMEGVR LARALE T G+SHVYVH+EGRIDALG + + + G S Q LG S S+ VVD RDNA
Sbjct: 34 FSKVQLLRLLRVRDGMLEAKQKEVSLVAHQNGLLRDQTNAAEAEMAALQLTLKEKEQALSAERKVSERAGRAVKRLQNEMEHYLGREQAIHMSAAQSTRLLKLLEQEEIKREHLLREKDAAVSEVGELKARVAALTKTHAEQEVDLQLRLAKALRDLAATNEHHAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRDGGEDAAALLSALSHKGAAQEAQLAAALAALADVRAAARDAQARAAEDAALADARAESDRAAKEKLQERVRDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTALTQQLRGVVDQLRSAASMEATQRRLHRALDKFNTQMA-PGVGGXXXXXXXXXXXXXXXXFVADMAGGVTASAWTALQQQTWSKRQMLSLFVQHAAATAAASAANAVVPDSGACDADSPASFKMERSGAGGTPSELLIPLGNCGIVDSDIDCVADTLARVAEYTALPPLMV-DLSANFITDTGASQLAAVLRLDGCKVKRLDLRYNQVTMEGVRALARALESCTHHGISHVYVHAEGRIDALGVQQPQCTTGGS----STDAAATEQQPLGPDSLVSIAVVDVRDNA 644 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1100.928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1100.928.1 >prot_H-canaliculatus_F_contig1100.928.1 ID=prot_H-canaliculatus_F_contig1100.928.1|Name=mRNA_H-canaliculatus_F_contig1100.928.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=628bp MIRSTQVLLLSKQNQGLREGIDAVEKEMASLHGMIEARDDAAQKLKREGDback to top mRNA from alignment at H-canaliculatus_F_contig1100:6772..15498+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1100.928.1 ID=mRNA_H-canaliculatus_F_contig1100.928.1|Name=mRNA_H-canaliculatus_F_contig1100.928.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=8727bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1100:6772..15498+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1100:6772..15498+ >mRNA_H-canaliculatus_F_contig1100.928.1 ID=mRNA_H-canaliculatus_F_contig1100.928.1|Name=mRNA_H-canaliculatus_F_contig1100.928.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3768bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1100:6772..15498+ (Hapterophycus canaliculatus Oshoro5f female)back to top |