mRNA_H-canaliculatus_F_contig10972.893.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10972.893.1
Unique NamemRNA_H-canaliculatus_F_contig10972.893.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10972.893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10972contigH-canaliculatus_F_contig10972:3945..4458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size369
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928768.9427185-CDS-H-canaliculatus_F_contig10972:3944..43131622928768.9427185-CDS-H-canaliculatus_F_contig10972:3944..4313Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10972 3945..4313 +
1696845556.791396-CDS-H-canaliculatus_F_contig10972:3944..43131696845556.791396-CDS-H-canaliculatus_F_contig10972:3944..4313Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10972 3945..4313 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928768.9626706-UTR-H-canaliculatus_F_contig10972:4313..44581622928768.9626706-UTR-H-canaliculatus_F_contig10972:4313..4458Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10972 4314..4458 +
1696845556.800039-UTR-H-canaliculatus_F_contig10972:4313..44581696845556.800039-UTR-H-canaliculatus_F_contig10972:4313..4458Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10972 4314..4458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10972.893.1prot_H-canaliculatus_F_contig10972.893.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10972 3945..4313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10972.893.1

>prot_H-canaliculatus_F_contig10972.893.1 ID=prot_H-canaliculatus_F_contig10972.893.1|Name=mRNA_H-canaliculatus_F_contig10972.893.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=123bp
PVPSGPAPASAPARFITQDVTVTSERDGVLEGGSLRRGWRYLYLVQKAPG
SRSEGAQTGRWTSRSQSFTKRDIIFGPLLPLFFLRRAEDATELCLLGAGE
GGFSRRVSTDTPADRLFHLTSC*
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mRNA from alignment at H-canaliculatus_F_contig10972:3945..4458+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10972.893.1 ID=mRNA_H-canaliculatus_F_contig10972.893.1|Name=mRNA_H-canaliculatus_F_contig10972.893.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=514bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10972:3945..4458+ (Hapterophycus canaliculatus Oshoro5f female)
CCGGTACCGTCCGGTCCTGCCCCTGCTTCTGCTCCTGCACGGTTCATCAC
CCAGGACGTCACCGTAACGTCGGAACGGGACGGGGTGTTGGAGGGGGGAA
GCCTACGGCGGGGTTGGAGGTACTTGTATCTTGTGCAGAAGGCGCCGGGC
TCGCGATCAGAGGGAGCTCAGACTGGCCGGTGGACGTCTCGCAGTCAGTC
TTTCACGAAGCGAGATATCATATTCGGTCCACTGCTGCCTTTGTTTTTTC
TCCGCCGAGCAGAGGATGCCACTGAGCTGTGCCTGCTGGGTGCCGGAGAA
GGGGGCTTTTCGCGGCGAGTTTCAACAGATACGCCCGCAGACAGATTATT
CCACCTCACGAGCTGCTGAGTTAGATGTAATCGGATATCGCCTCCGAGGC
TTCCCCTCGAAAGAATCGGAACCTAATTACAGATGCCTATGTTGCTTCTC
TCAATTTTAGGCCGCGCCAGACAGAACAAGTACTTCAGGGCCGCTGTTAA
CGAGTTTCGGAAAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10972:3945..4458+

>mRNA_H-canaliculatus_F_contig10972.893.1 ID=mRNA_H-canaliculatus_F_contig10972.893.1|Name=mRNA_H-canaliculatus_F_contig10972.893.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=738bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10972:3945..4458+ (Hapterophycus canaliculatus Oshoro5f female)
CCGGTACCGTCCGGTCCTGCCCCTGCTTCTGCTCCTGCACGGTTCATCAC
CCAGGACGTCACCGTAACGTCGGAACGGGACGGGGTGTTGGAGGGGGGAA
GCCTACGGCGGGGTTGGAGGTACTTGTATCTTGTGCAGAAGGCGCCGGGC
TCGCGATCAGAGGGAGCTCAGACTGGCCGGTGGACGTCTCGCAGTCAGTC
TTTCACGAAGCGAGATATCATATTCGGTCCACTGCTGCCTTTGTTTTTTC
TCCGCCGAGCAGAGGATGCCACTGAGCTGTGCCTGCTGGGTGCCGGAGAA
GGGGGCTTTTCGCGGCGAGTTTCAACAGATACGCCCGCAGACAGATTATT
CCACCTCACGAGCTGCTGACCGGTACCGTCCGGTCCTGCCCCTGCTTCTG
CTCCTGCACGGTTCATCACCCAGGACGTCACCGTAACGTCGGAACGGGAC
GGGGTGTTGGAGGGGGGAAGCCTACGGCGGGGTTGGAGGTACTTGTATCT
TGTGCAGAAGGCGCCGGGCTCGCGATCAGAGGGAGCTCAGACTGGCCGGT
GGACGTCTCGCAGTCAGTCTTTCACGAAGCGAGATATCATATTCGGTCCA
CTGCTGCCTTTGTTTTTTCTCCGCCGAGCAGAGGATGCCACTGAGCTGTG
CCTGCTGGGTGCCGGAGAAGGGGGCTTTTCGCGGCGAGTTTCAACAGATA
CGCCCGCAGACAGATTATTCCACCTCACGAGCTGCTGA
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