mRNA_H-canaliculatus_F_contig1093.865.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1093.865.1
Unique NamemRNA_H-canaliculatus_F_contig1093.865.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1093.865.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1093contigH-canaliculatus_F_contig1093:16136..16919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size784
Cds size513
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1093.865.1prot_H-canaliculatus_F_contig1093.865.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1093 16277..16789 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928764.5386097-UTR-H-canaliculatus_F_contig1093:16135..162761622928764.5386097-UTR-H-canaliculatus_F_contig1093:16135..16276Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1093 16136..16276 +
1696845554.5561569-UTR-H-canaliculatus_F_contig1093:16135..162761696845554.5561569-UTR-H-canaliculatus_F_contig1093:16135..16276Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1093 16136..16276 +
1622928764.5670202-UTR-H-canaliculatus_F_contig1093:16789..169191622928764.5670202-UTR-H-canaliculatus_F_contig1093:16789..16919Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1093 16790..16919 +
1696845554.5832443-UTR-H-canaliculatus_F_contig1093:16789..169191696845554.5832443-UTR-H-canaliculatus_F_contig1093:16789..16919Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1093 16790..16919 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928764.5550632-CDS-H-canaliculatus_F_contig1093:16276..167891622928764.5550632-CDS-H-canaliculatus_F_contig1093:16276..16789Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1093 16277..16789 +
1696845554.5709789-CDS-H-canaliculatus_F_contig1093:16276..167891696845554.5709789-CDS-H-canaliculatus_F_contig1093:16276..16789Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1093 16277..16789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1093.865.1

>prot_H-canaliculatus_F_contig1093.865.1 ID=prot_H-canaliculatus_F_contig1093.865.1|Name=mRNA_H-canaliculatus_F_contig1093.865.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=171bp
MEVTLMRGAPSPRRRACDVRLRGGSKKKKRDLQESVWKEWEQKQKWTLVE
GTSRKVPPPQRLSRLAASFHNWRQRMGLFTSGSQTRARIRFMSFPLIIYS
RKENSLPYHKKENNNGGLIMNSRFTSVVGVANPYTPCSYRKTSEWGGKQD
PTCNSFCLDVTGLPQSVKNP*
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mRNA from alignment at H-canaliculatus_F_contig1093:16136..16919+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1093.865.1 ID=mRNA_H-canaliculatus_F_contig1093.865.1|Name=mRNA_H-canaliculatus_F_contig1093.865.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=784bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1093:16136..16919+ (Hapterophycus canaliculatus Oshoro5f female)
CCGACGCCAGCGTCGCGAACGTTGCCAGGAGTGCAGCGGCAGCCAAGGCG
AAAAATCCCATCAGAGTCTTCCAAAACCTGTCCGCCTGCACGTGCACGGG
GTGGGATCAAGAACGCTTACCAAACTTGTGCTTCGTAGCACATGGAAGTA
ACGTTGATGAGAGGGGCCCCTTCGCCACGACGGCGGGCATGTGATGTACG
GTTACGTGGTGGGAGCAAGAAAAAGAAAAGGGACCTACAAGAATCCGTGT
GGAAGGAGTGGGAGCAGAAACAAAAATGGACACTGGTGGAGGGCACCTCC
AGAAAGGTACCGCCTCCTCAACGTCTGTCGAGGTTGGCTGCTTCTTTTCA
CAATTGGCGTCAACGAATGGGCCTGTTCACCTCGGGGTCACAGACGCGAG
CTCGAATTCGTTTTATGTCATTTCCTCTTATCATCTACAGTAGAAAGGAA
AATTCCCTTCCATATCATAAAAAGGAGAATAACAACGGGGGCCTGATCAT
GAACTCGCGCTTCACTTCCGTGGTGGGCGTGGCGAACCCGTATACTCCAT
GTAGTTATCGAAAGACAAGCGAGTGGGGAGGAAAACAGGATCCAACTTGC
AATAGCTTCTGTCTAGACGTGACGGGCTTGCCTCAATCCGTGAAAAACCC
ATGAAAAAATCAGCGGAAAGATGGACGGGAAACACACACAGTGGGATAGA
CTCGTCGCCAGCCGCTCGGGTTCCGGTTATACCCCTCGTACACTTCTTTC
TTAGCAACCAAAGAAAGACTCAAAAAGGGGAGGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1093:16136..16919+

>mRNA_H-canaliculatus_F_contig1093.865.1 ID=mRNA_H-canaliculatus_F_contig1093.865.1|Name=mRNA_H-canaliculatus_F_contig1093.865.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1026bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1093:16136..16919+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAGTAACGTTGATGAGAGGGGCCCCTTCGCCACGACGGCGGGCATG
TGATGTACGGTTACGTGGTGGGAGCAAGAAAAAGAAAAGGGACCTACAAG
AATCCGTGTGGAAGGAGTGGGAGCAGAAACAAAAATGGACACTGGTGGAG
GGCACCTCCAGAAAGGTACCGCCTCCTCAACGTCTGTCGAGGTTGGCTGC
TTCTTTTCACAATTGGCGTCAACGAATGGGCCTGTTCACCTCGGGGTCAC
AGACGCGAGCTCGAATTCGTTTTATGTCATTTCCTCTTATCATCTACAGT
AGAAAGGAAAATTCCCTTCCATATCATAAAAAGGAGAATAACAACGGGGG
CCTGATCATGAACTCGCGCTTCACTTCCGTGGTGGGCGTGGCGAACCCGT
ATACTCCATGTAGTTATCGAAAGACAAGCGAGTGGGGAGGAAAACAGGAT
CCAACTTGCAATAGCTTCTGTCTAGACGTGACGGGCTTGCCTCAATCCGT
GAAAAACCCATGAATGGAAGTAACGTTGATGAGAGGGGCCCCTTCGCCAC
GACGGCGGGCATGTGATGTACGGTTACGTGGTGGGAGCAAGAAAAAGAAA
AGGGACCTACAAGAATCCGTGTGGAAGGAGTGGGAGCAGAAACAAAAATG
GACACTGGTGGAGGGCACCTCCAGAAAGGTACCGCCTCCTCAACGTCTGT
CGAGGTTGGCTGCTTCTTTTCACAATTGGCGTCAACGAATGGGCCTGTTC
ACCTCGGGGTCACAGACGCGAGCTCGAATTCGTTTTATGTCATTTCCTCT
TATCATCTACAGTAGAAAGGAAAATTCCCTTCCATATCATAAAAAGGAGA
ATAACAACGGGGGCCTGATCATGAACTCGCGCTTCACTTCCGTGGTGGGC
GTGGCGAACCCGTATACTCCATGTAGTTATCGAAAGACAAGCGAGTGGGG
AGGAAAACAGGATCCAACTTGCAATAGCTTCTGTCTAGACGTGACGGGCT
TGCCTCAATCCGTGAAAAACCCATGA
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