mRNA_H-canaliculatus_F_contig1080.759.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1080.759.1 vs. uniprot
Match: D8LF09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF09_ECTSI) HSP 1 Score: 674 bits (1740), Expect = 5.090e-235 Identity = 400/585 (68.38%), Postives = 445/585 (76.07%), Query Frame = 1 Query: 226 VAINASRIDVTNLA--ERKDPASAYQITRPRWYNKAEVAIIVLLCQRLRMLDLKGVEHMLDAASAFAKEDPRDVWQRALFLSKAAPGANFRTVIQRHPRTLLVPVHKMKRVFAILXXXXXXXXXXXXXXXXXSVLSRNATRLESNIAGLKRHAPEVDSAIFQAAPSMVYLPPHTVEEKVAALRACLPGVDLYTFLKGMPTVLGRSKETVPRGMSQLRERFPTASSKELVRIVESAPSLVRMSGANGTLSIKASASAKTADPASVDHLMALLPGVNVTNVISNAPGVLIRGVASLXXXXXXXXXXXXXXXXXXXXXXXXXXMYLDIDRTVRPKAMWIQEAVGLDQQGLDRLVEQGPWLLKAGWGPLARLEFAVQAGIATVDRPSSMFSLVRRSRLAFAAAHHPAYSEFLRNRLEEEEIEGGSGXXXGDWEGGQQGEGGGGALHPLAWRAAASKDEEAGR-VSRRGSAKMRSEPPLANPAGGGRRRTAKLENAGATKGVV-SGAEGEEDDDNASVLERTALEVAELEDALGRGRKSRLAGVKDRPPNAQQSPLARVQGSAQEGDALLDLGREKIVAYETPPQRQLGA 1968 +A+NAS T+LA + AS YQITRPRWYNKAEVAIIVLLCQRLRM+DLKGVEHMLDAA FAKEDPRDVWQRAL+LSKAAPGANFRTVIQRHPRTLLVPVHKM+ V ++LXXXXXXXXXXXXXXXXX N TRLE NIAGLK++APEV+SAIFQAAPSMVYLP HTVEEKVAALRACLPG+DLY FLKGMPT L RSK+TVPRGM QLRERFP+AS++ELVRIVESAPSLVRMSGANG+LSIK V L L P NVT ++S PG+ MYLD+DRTVR KAMWIQ+AVGLDQ+GLDRLVEQGPWLLKAGWGPLARLEFA++AG+ATVDRPS++FSLVRRSRLAFA AHH +Y FLR +LEEE IE G EG GG HPLAWRAAA + GR VSR S K S P A+ GG+ RTA+LENAGAT GVV +G+E+D +A ++ERTALEVA LEDALGRGRKSRL GVKDRPPN QSPLAR+QGS EGDALLDLG+EKIVAY++PPQ QLGA Sbjct: 1 MALNASSDAATSLAVAPTSNSASGYQITRPRWYNKAEVAIIVLLCQRLRMIDLKGVEHMLDAAPKFAKEDPRDVWQRALYLSKAAPGANFRTVIQRHPRTLLVPVHKMQHVLSLLXXXXXXXXXXXXXXXXXXXXXXNTTRLEDNIAGLKKYAPEVNSAIFQAAPSMVYLPAHTVEEKVAALRACLPGIDLYNFLKGMPTALARSKQTVPRGMDQLRERFPSASNRELVRIVESAPSLVRMSGANGSLSIK------------VTKLQELFPSANVTKMVSRTPGI----------------------------------MYLDVDRTVRSKAMWIQQAVGLDQEGLDRLVEQGPWLLKAGWGPLARLEFAIEAGVATVDRPSTIFSLVRRSRLAFARAHHESYGSFLRKKLEEEAIE------LGGREGXXXXXEGGDLHHPLAWRAAAGNAVDGGRRVSRPVSPKKGSGPKAASATLGGK-RTARLENAGATPGVVLESGDGKEEDQDA-LMERTALEVAGLEDALGRGRKSRLGGVKDRPPNPGQSPLARLQGSRHEGDALLDLGKEKIVAYDSPPQPQLGA 531
BLAST of mRNA_H-canaliculatus_F_contig1080.759.1 vs. uniprot
Match: A0A6H5K0X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0X3_9PHAE) HSP 1 Score: 477 bits (1227), Expect = 6.500e-159 Identity = 287/454 (63.22%), Postives = 320/454 (70.48%), Query Frame = 1 Query: 718 MVYLPPHTVEEKVAALRACLPGVDLYTFLKGMPTVLGRSKETVPRGMSQLRERFPTASSKELVRIVESAPSLVRMSGANGTLSIKASASAKT-ADPASVDHLMALLPGVNVTNVISNAPGVLIRGVASLXXXXXXXXXXXXXXXXXXXXXXXXXXM----------------------------------YLDIDRTVRPKAMWIQEAVGLDQQGLDRLVEQGPWLLKAGWGPLARLEFAVQAGIATVDRPSSMFSLVRRSRLAFAAAHHPAYSEFLRNRLEEEEIEGGSGXXXGDWEGGQQGEGGGGALHPLAWRAAASKDEEAGR-VSRRGSAKMRSEPPLANPAGGGRRRTAKLENAGATKGVV-SGAEGEEDDDNASVLERTALEVAELEDALGRGRKSRLAGVKDRPPNAQQSPLARVQGSAQEGDALLDLGREKIVAYETPPQRQLGA 1968 MVYLP HTVEEKVAALRACLPG+DLY FLKGMPT L RSK+TVPRGM QLRERFP+AS++ELVRIVESAPSLVRMSGANG+LSIKASA +VD+LM+LLPGVNVTNVISNAPGVLIRGV SL M YLD+DRTVR KAMWIQ+AVGLDQ+GLDRLVEQGPWLLKAGWGPLARLEFA++AG+ATVDRPS++FSLVRRSRLAFA A+H +Y FLR ++EEE IE G XXX HPLAWRAAA D E GR VSR S K S P A+ G+ RTAKLE+AGAT GVV +G+ED D +++ERTALEVA LEDALGRGRKSRL GVKDRPPN Q+PLAR+QGS EGDALLDLGREKIVAY++PPQ QLGA Sbjct: 1 MVYLPAHTVEEKVAALRACLPGIDLYNFLKGMPTALARSKQTVPRGMDQLRERFPSASNRELVRIVESAPSLVRMSGANGSLSIKASAERHFFVSVPTVDNLMSLLPGVNVTNVISNAPGVLIRGVTSLPTKDGAILSEQPPASFLCDHAFKTMTMVSQPRSHAGQVTKLQELFPSANVTKMVSRTPGIMYLDVDRTVRSKAMWIQQAVGLDQEGLDRLVEQGPWLLKAGWGPLARLEFAIEAGVATVDRPSTIFSLVRRSRLAFARAYHESYGSFLRKKIEEEAIEQGXXXXXXXXXD---------LRHPLAWRAAAGNDVEGGRRVSRPVSPKKGSGPTAASATLDGK-RTAKLEHAGATAGVVLESGDGKEDKD--ALMERTALEVAGLEDALGRGRKSRLGGVKDRPPNPGQTPLARLQGSQHEGDALLDLGREKIVAYDSPPQPQLGA 442
BLAST of mRNA_H-canaliculatus_F_contig1080.759.1 vs. uniprot
Match: A0A6H5K0J9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J9_9PHAE) HSP 1 Score: 151 bits (381), Expect = 2.840e-39 Identity = 84/125 (67.20%), Postives = 93/125 (74.40%), Query Frame = 1 Query: 226 VAINASRIDVTNLA--ERKDPASAYQITRPRWYNKAEVAIIVLLCQRLRMLDLKGVEHMLDAASAFAKEDP-----------RDVWQRALFLSKAAPGANFRTVIQRHPRTLLVPVHKMKRVFAI 561 +A+NAS T+LA + ASAYQITRPRWYNKAEVAIIVLLCQRLRM+DLKGVEHMLDAA FAKEDP RDVWQRAL+LSKAAPGANFRTVIQRHPR ++RVF + Sbjct: 1 MALNASSDAATSLAVAPASNSASAYQITRPRWYNKAEVAIIVLLCQRLRMIDLKGVEHMLDAAPKFAKEDPVREPVRSLKLQRDVWQRALYLSKAAPGANFRTVIQRHPR--------VRRVFRV 117 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1080.759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1080.759.1 >prot_H-canaliculatus_F_contig1080.759.1 ID=prot_H-canaliculatus_F_contig1080.759.1|Name=mRNA_H-canaliculatus_F_contig1080.759.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=641bp MTVLSFLLASLLLPISVPAFFVAVPLRVATLNDGRFNPCPSGLCSVEQSTback to top mRNA from alignment at H-canaliculatus_F_contig1080:23402..29170+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1080.759.1 ID=mRNA_H-canaliculatus_F_contig1080.759.1|Name=mRNA_H-canaliculatus_F_contig1080.759.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5769bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1080:23402..29170+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1080:23402..29170+ >mRNA_H-canaliculatus_F_contig1080.759.1 ID=mRNA_H-canaliculatus_F_contig1080.759.1|Name=mRNA_H-canaliculatus_F_contig1080.759.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3846bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1080:23402..29170+ (Hapterophycus canaliculatus Oshoro5f female)back to top |