mRNA_H-canaliculatus_F_contig10787.735.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10787.735.1
Unique NamemRNA_H-canaliculatus_F_contig10787.735.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10787.735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10787contigH-canaliculatus_F_contig10787:1879..2647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size769
Cds size459
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928742.283647-CDS-H-canaliculatus_F_contig10787:1878..23371622928742.283647-CDS-H-canaliculatus_F_contig10787:1878..2337Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10787 1879..2337 +
1696845546.7163913-CDS-H-canaliculatus_F_contig10787:1878..23371696845546.7163913-CDS-H-canaliculatus_F_contig10787:1878..2337Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10787 1879..2337 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928742.299878-UTR-H-canaliculatus_F_contig10787:2337..26471622928742.299878-UTR-H-canaliculatus_F_contig10787:2337..2647Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10787 2338..2647 +
1696845546.7243621-UTR-H-canaliculatus_F_contig10787:2337..26471696845546.7243621-UTR-H-canaliculatus_F_contig10787:2337..2647Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10787 2338..2647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10787.735.1prot_H-canaliculatus_F_contig10787.735.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10787 1879..2337 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10787.735.1

>prot_H-canaliculatus_F_contig10787.735.1 ID=prot_H-canaliculatus_F_contig10787.735.1|Name=mRNA_H-canaliculatus_F_contig10787.735.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=153bp
LFGCRLGGVVHLLLLLLLVALPPVPVVTAPDFVGAGAAKREREAGVSTER
RPAKKAAAVVAFASAGAGAGAGAGAGAAGAGAARRWGCERPSPAANLEPP
SVAVVAVPAGCRCYPRWVPLLRAGIAPPPPPPPPAAKLAVPSSPLHPCSC
RS*
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mRNA from alignment at H-canaliculatus_F_contig10787:1879..2647+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10787.735.1 ID=mRNA_H-canaliculatus_F_contig10787.735.1|Name=mRNA_H-canaliculatus_F_contig10787.735.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=769bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10787:1879..2647+ (Hapterophycus canaliculatus Oshoro5f female)
CTTTTCGGTTGCCGTTTAGGGGGAGTCGTGCATCTGCTGCTGCTGCTGCT
GCTGGTGGCTCTGCCGCCGGTGCCGGTGGTGACCGCCCCTGATTTTGTGG
GGGCGGGAGCAGCGAAGAGGGAGAGAGAAGCGGGGGTCTCAACGGAGCGG
CGTCCGGCAAAGAAAGCTGCTGCCGTTGTTGCATTTGCGTCTGCTGGTGC
TGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGCTGGTGCTGGTGCTGCTC
GAAGGTGGGGCTGCGAGAGGCCTTCGCCAGCAGCGAATCTAGAGCCACCA
TCGGTGGCGGTTGTTGCTGTTCCTGCTGGCTGCCGCTGTTATCCCCGCTG
GGTTCCGCTGCTGCGCGCTGGGATAGCGCCGCCGCCGCCGCCACCGCCGC
CTGCTGCGAAGCTTGCCGTGCCGAGCTCTCCATTGCACCCGTGCTCATGT
CGCTCCTAGCCCCCGAGCTCTCTGCGTCTTCACGCGGCTGTTGTGGTCGA
CTCCCTTGTTTCCCTGATGGCGAACCGACGTCGTCGGTGATCCCCTGCTC
TTCCCGTTCAACAACGGCGCTGCTGCTGCCGCTGCCGCTGCGGCAAGCGC
GGCCGCTTTCGTCGAGTGCTGGCCCAACTTCGGAGGGCCTAAGGAGTGTC
GGGGGGGAAGGACCCTTCTCAACTTTAGCGCTACCACTGACCATTGCAGC
GAGCCATTGCATTTCTCCGAAGGGTGCGCAGTCCCTGTGACACTCGCTCC
CAATTGTGGGCTGCTTTCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10787:1879..2647+

>mRNA_H-canaliculatus_F_contig10787.735.1 ID=mRNA_H-canaliculatus_F_contig10787.735.1|Name=mRNA_H-canaliculatus_F_contig10787.735.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=918bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10787:1879..2647+ (Hapterophycus canaliculatus Oshoro5f female)
CTTTTCGGTTGCCGTTTAGGGGGAGTCGTGCATCTGCTGCTGCTGCTGCT
GCTGGTGGCTCTGCCGCCGGTGCCGGTGGTGACCGCCCCTGATTTTGTGG
GGGCGGGAGCAGCGAAGAGGGAGAGAGAAGCGGGGGTCTCAACGGAGCGG
CGTCCGGCAAAGAAAGCTGCTGCCGTTGTTGCATTTGCGTCTGCTGGTGC
TGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGCTGGTGCTGGTGCTGCTC
GAAGGTGGGGCTGCGAGAGGCCTTCGCCAGCAGCGAATCTAGAGCCACCA
TCGGTGGCGGTTGTTGCTGTTCCTGCTGGCTGCCGCTGTTATCCCCGCTG
GGTTCCGCTGCTGCGCGCTGGGATAGCGCCGCCGCCGCCGCCACCGCCGC
CTGCTGCGAAGCTTGCCGTGCCGAGCTCTCCATTGCACCCGTGCTCATGT
CGCTCCTAGCTTTTCGGTTGCCGTTTAGGGGGAGTCGTGCATCTGCTGCT
GCTGCTGCTGCTGGTGGCTCTGCCGCCGGTGCCGGTGGTGACCGCCCCTG
ATTTTGTGGGGGCGGGAGCAGCGAAGAGGGAGAGAGAAGCGGGGGTCTCA
ACGGAGCGGCGTCCGGCAAAGAAAGCTGCTGCCGTTGTTGCATTTGCGTC
TGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGCTGGTGCTG
GTGCTGCTCGAAGGTGGGGCTGCGAGAGGCCTTCGCCAGCAGCGAATCTA
GAGCCACCATCGGTGGCGGTTGTTGCTGTTCCTGCTGGCTGCCGCTGTTA
TCCCCGCTGGGTTCCGCTGCTGCGCGCTGGGATAGCGCCGCCGCCGCCGC
CACCGCCGCCTGCTGCGAAGCTTGCCGTGCCGAGCTCTCCATTGCACCCG
TGCTCATGTCGCTCCTAG
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