mRNA_H-canaliculatus_F_contig1076.721.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1076.721.1
Unique NamemRNA_H-canaliculatus_F_contig1076.721.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1076.721.1 vs. uniprot
Match: A0A6H5K387_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K387_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.790e-40
Identity = 70/115 (60.87%), Postives = 87/115 (75.65%), Query Frame = 1 
Query:    1 MTKGVKGITGGCPVFLRAFKRADKHFHVTDCLFDHTNCAGGKKKPSLRAMATEGAVIVHANRKITSGGLVKTLKGSYGVELRPHTANRLKRLVVGVSEAAQNEGYQRIESYLDIL 345
            M KG K  TGGC   +RA KR DKHFHVT   F+H NC GGKKKPS+ A+A EGA +VHANRK+T+ GL KTLKG++GVEL+  +A+RLKR V+G S+  Q EG QR +SY+D+L
Sbjct:   72 MEKGTKN-TGGCQAHVRANKRRDKHFHVTSASFEHQNCVGGKKKPSVAALAAEGAAVVHANRKVTAPGLAKTLKGTFGVELKSWSAHRLKRRVIGDSKEEQAEGIQRFQSYMDLL 185
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BLAST of mRNA_H-canaliculatus_F_contig1076.721.1 vs. uniprot
Match: A0A6H5JAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT0_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.290e-40
Identity = 70/107 (65.42%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:   25 TGGCPVFLRAFKRADKHFHVTDCLFDHTNCAGGKKKPSLRAMATEGAVIVHANRKITSGGLVKTLKGSYGVELRPHTANRLKRLVVGVSEAAQNEGYQRIESYLDIL 345
            TGGC V +RA KR DKH+++T+  ++H++CAGGKK PS+ A+A EG V+V+ANR+IT+GGLVK L+G++GVEL PHTANR+KR VVGVSE AQNEGYQR++S LD L
Sbjct:   80 TGGCQVLIRANKRKDKHWYITETQYEHSSCAGGKK-PSVAALAKEGEVVVNANREITAGGLVKQLRGAHGVELTPHTANRVKRSVVGVSEEAQNEGYQRLQSSLDQL 185
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BLAST of mRNA_H-canaliculatus_F_contig1076.721.1 vs. uniprot
Match: A0A6H5KMW0_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW0_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 5.200e-33
Identity = 60/113 (53.10%), Postives = 79/113 (69.91%), Query Frame = 1 
Query:    7 KGVKGITGGCPVFLRAFKRADKHFHVTDCLFDHTNCAGGKKKPSLRAMATEGAVIVHANRKITSGGLVKTLKGSYGVELRPHTANRLKRLVVGVSEAAQNEGYQRIESYLDIL 345
            KG K  TGGC   ++A KRADKHF+VT   +DH NCAGG KKPS+RAMA EGAV+V  N K+++  L KTLKG++GV++    A R+KR V    E  + EG QR+ S+LD++
Sbjct:   74 KGSK-TTGGCQAHVKANKRADKHFYVTSVCYDHQNCAGGTKKPSVRAMAAEGAVVVRGNPKVSAPALAKTLKGAHGVDMATWAAGRVKRGVTNGQEDTKKEGIQRLASFLDLI 185
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1076.721.1 vs. uniprot
Match: A0A6H5JMR7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR7_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.970e-31
Identity = 58/113 (51.33%), Postives = 78/113 (69.03%), Query Frame = 1 
Query:    7 KGVKGITGGCPVFLRAFKRADKHFHVTDCLFDHTNCAGGKKKPSLRAMATEGAVIVHANRKITSGGLVKTLKGSYGVELRPHTANRLKRLVVGVSEAAQNEGYQRIESYLDIL 345
            KG K  TGGC   ++A KRADKHF+VT   +DH NCAGG KKPS+ AMA EGAV+V  N K+++  L KTLKG++GV++    A R++R V    E  + EG QR+ S+LD++
Sbjct:   94 KGSK-TTGGCQAHVKANKRADKHFYVTSVCYDHQNCAGGTKKPSVGAMAAEGAVVVRGNPKVSAPALAKTLKGAHGVDMATWAAGRVERGVTNGQEDTKKEGLQRLASFLDLI 205
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1076.721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K387_9PHAE1.790e-4060.87MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JAT0_9PHAE2.290e-4065.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMW0_9PHAE5.200e-3353.10Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMR7_9PHAE3.970e-3151.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1076contigH-canaliculatus_F_contig1076:8550..8897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size348
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928740.1594496-CDS-H-canaliculatus_F_contig1076:8549..88971622928740.1594496-CDS-H-canaliculatus_F_contig1076:8549..8897Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1076 8550..8897 +
1696845545.982872-CDS-H-canaliculatus_F_contig1076:8549..88971696845545.982872-CDS-H-canaliculatus_F_contig1076:8549..8897Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1076 8550..8897 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1076.721.1prot_H-canaliculatus_F_contig1076.721.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1076 8550..8897 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1076.721.1

>prot_H-canaliculatus_F_contig1076.721.1 ID=prot_H-canaliculatus_F_contig1076.721.1|Name=mRNA_H-canaliculatus_F_contig1076.721.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
MTKGVKGITGGCPVFLRAFKRADKHFHVTDCLFDHTNCAGGKKKPSLRAM
ATEGAVIVHANRKITSGGLVKTLKGSYGVELRPHTANRLKRLVVGVSEAA
QNEGYQRIESYLDILT
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mRNA from alignment at H-canaliculatus_F_contig1076:8550..8897+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1076.721.1 ID=mRNA_H-canaliculatus_F_contig1076.721.1|Name=mRNA_H-canaliculatus_F_contig1076.721.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1076:8550..8897+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGAAGGGGGTGAAGGGCATAACCGGAGGGTGTCCGGTGTTTTTACG
CGCATTCAAGCGCGCCGACAAACACTTTCACGTAACCGACTGTTTGTTCG
ACCACACAAACTGCGCCGGAGGAAAGAAGAAGCCAAGCCTTCGCGCCATG
GCCACCGAGGGTGCTGTGATTGTTCACGCCAATCGGAAGATCACCTCCGG
AGGGCTTGTGAAAACGCTGAAGGGTTCCTACGGAGTGGAGCTGAGACCGC
ACACGGCGAACCGCCTGAAGCGCCTGGTTGTAGGAGTTAGCGAAGCTGCC
CAAAATGAGGGCTATCAACGAATTGAGAGCTACCTCGACATCCTGACA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1076:8550..8897+

>mRNA_H-canaliculatus_F_contig1076.721.1 ID=mRNA_H-canaliculatus_F_contig1076.721.1|Name=mRNA_H-canaliculatus_F_contig1076.721.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1076:8550..8897+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGAAGGGGGTGAAGGGCATAACCGGAGGGTGTCCGGTGTTTTTACG
CGCATTCAAGCGCGCCGACAAACACTTTCACGTAACCGACTGTTTGTTCG
ACCACACAAACTGCGCCGGAGGAAAGAAGAAGCCAAGCCTTCGCGCCATG
GCCACCGAGGGTGCTGTGATTGTTCACGCCAATCGGAAGATCACCTCCGG
AGGGCTTGTGAAAACGCTGAAGGGTTCCTACGGAGTGGAGCTGAGACCGC
ACACGGCGAACCGCCTGAAGCGCCTGGTTGTAGGAGTTAGCGAAGCTGCC
CAAAATGAGGGCTATCAACGAATTGAGAGCTACCTCGACATCCTGACAAT
GACGAAGGGGGTGAAGGGCATAACCGGAGGGTGTCCGGTGTTTTTACGCG
CATTCAAGCGCGCCGACAAACACTTTCACGTAACCGACTGTTTGTTCGAC
CACACAAACTGCGCCGGAGGAAAGAAGAAGCCAAGCCTTCGCGCCATGGC
CACCGAGGGTGCTGTGATTGTTCACGCCAATCGGAAGATCACCTCCGGAG
GGCTTGTGAAAACGCTGAAGGGTTCCTACGGAGTGGAGCTGAGACCGCAC
ACGGCGAACCGCCTGAAGCGCCTGGTTGTAGGAGTTAGCGAAGCTGCCCA
AAATGAGGGCTATCAACGAATTGAGAGCTACCTCGACATCCTGACA
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