mRNA_H-canaliculatus_F_contig1076.722.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1076.722.1
Unique NamemRNA_H-canaliculatus_F_contig1076.722.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1076.722.1 vs. uniprot
Match: A0A6H5KA14_9PHAE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 2.480e-53
Identity = 95/174 (54.60%), Postives = 120/174 (68.97%), Query Frame = 2 
Query:    2 RWWSEVTSVRSVLRTRKALELLQMKRQAPCPTLLEKLDWDFLQVLLEVMVPFAEATATMEADKTPTIGILLGMVVFLKRKLKELGQHNNPAIRAAAGDMLEDLDQRYTLDPFAEEGLGTSGCTKMHLVGAALDPRAKVMAGVQRSVKRQAFGCVEALGAQIIDEKLAEEFAGKD 523
            RWWSEVT++RSVL  +KAL+ L MK ++PCP LL  LDWD L++LL+++ PFA  TA MEADK  T+G +LGMV FL+ K+ +L  H NP I A A DM  D D R+ LDPF  E  GTSGCTK+HL  A LDPRAK  A +  S++++A   +E LG Q+I EKL  EF   D
Sbjct:  228 RWWSEVTTIRSVLTNKKALQALAMKNESPCPELLAGLDWDLLEILLQLLEPFAAVTAGMEADKYVTVGSVLGMVAFLQHKIGKLTAHANPGIAAPARDMKTDFDSRFKLDPFDHEP-GTSGCTKLHLAAAFLDPRAKDFARIPFSIQQKAANIIECLGEQLIAEKLQTEFGADD 400
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BLAST of mRNA_H-canaliculatus_F_contig1076.722.1 vs. uniprot
Match: A0A6H5KHJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ9_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.090e-36
Identity = 81/180 (45.00%), Postives = 112/180 (62.22%), Query Frame = 2 
Query:    2 RWWSEVTSVRSVLRTRKALELLQMKRQAPCPTLLEKLDWDFLQVLLEVMVPFAEATATMEADKTPTIGILLGMVVFLKRKLKELGQHNNPAIRAAAGDMLEDLDQRY----------TLDPFAEEGLGTSGCTKMHLVGAALDPRAKVMAGVQRSVKRQAFGCVEALGAQIIDEKLAEEF 511
            R W +VT + S+L  R+A+EL  MK +   P   +KL W F++ ++ V+ PFAEAT TME DK  TIG++L ++  L++K+  L +H N AIR AA +M  +L +R+          T+DP AE  LGTSGC K+H   A LDPRAK MA +   V   AFG V  L  Q+++EKLA+EF
Sbjct:  115 RRWLDVTMLESLLFNRRAMELALMKNEPLVPDAAKKLGWGFVEAVVAVLNPFAEATRTMETDKHSTIGLVLELLALLRKKIDGLLKHENGAIRVAAWNMSIELGRRWVGASSLWTVSTIDPSAET-LGTSGCKKIHFAAAVLDPRAKGMARIPGYVMDYAFGIVADLAEQLMEEKLAKEF 293
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BLAST of mRNA_H-canaliculatus_F_contig1076.722.1 vs. uniprot
Match: D8LDT4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT4_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 6.580e-35
Identity = 79/170 (46.47%), Postives = 107/170 (62.94%), Query Frame = 2 
Query:    2 RWWSEVTSVRSVLRTRKALELLQMKRQAPCPTLLEKLDWDFLQVLLEVMVPFAEATATMEADKTPTIGILLGMVVFLKRKLKELGQHNNPAIRAAAGDMLEDLDQRYTLDPFAEEGLGTSGCTKMHLVGAALDPRAKVMAGVQRSVKRQAFGCVEALGAQIIDEKLAEEF 511
            RWW +VT + S+L  R+A+EL  MK +A  P   +KLDW F++ +L V  PFAEAT TMEADK PTIG++LG+V   ++++  L ++ N AIRAAA +M  +  +RYT+DP AE  LGTSGC K+H   A LDPRAK M                     +++EKLA+EF
Sbjct:  582 RWWLDVTMLESLLFNRRAMELALMKNEALVPDAAKKLDWGFMEAVLAV--PFAEATRTMEADKHPTIGLVLGLVALRRKQIDGLLKNENGAIRAAARNMSIEFGRRYTIDPSAET-LGTSGCKKIHYAAAVLDPRAKGM---------------------LMEEKLAKEF 727
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1076.722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KA14_9PHAE2.480e-5354.60Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5KHJ9_9PHAE1.090e-3645.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LDT4_ECTSI6.580e-3546.47Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1076contigH-canaliculatus_F_contig1076:10747..11545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size591
Cds size591
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928740.0674624-CDS-H-canaliculatus_F_contig1076:10746..110191622928740.0674624-CDS-H-canaliculatus_F_contig1076:10746..11019Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1076 10747..11019 -
1696845545.9565132-CDS-H-canaliculatus_F_contig1076:10746..110191696845545.9565132-CDS-H-canaliculatus_F_contig1076:10746..11019Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1076 10747..11019 -
1622928740.0827208-CDS-H-canaliculatus_F_contig1076:11227..115451622928740.0827208-CDS-H-canaliculatus_F_contig1076:11227..11545Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1076 11228..11545 -
1696845545.9692235-CDS-H-canaliculatus_F_contig1076:11227..115451696845545.9692235-CDS-H-canaliculatus_F_contig1076:11227..11545Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1076 11228..11545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1076.722.1prot_H-canaliculatus_F_contig1076.722.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1076 10747..11545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1076.722.1

>prot_H-canaliculatus_F_contig1076.722.1 ID=prot_H-canaliculatus_F_contig1076.722.1|Name=mRNA_H-canaliculatus_F_contig1076.722.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=197bp
EVVVGGDERQERPPYQESPRTLANEAPGALSDSARETRLGFPPGTPRSHG
AVRGGDSDDGGRQDPHHRHLAGHGRLLEEETEGARAAQQPGHPRRCWGHA
RGLGSKVHSGPLRRRGAWYVRLHQDAPCRRCSRPEGESNGWRTAQCQAAG
VRMRGGPWRPDYRREARRGVRGEGRWSFDLRRELRGIGLQRRTRRR*
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mRNA from alignment at H-canaliculatus_F_contig1076:10747..11545-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1076.722.1 ID=mRNA_H-canaliculatus_F_contig1076.722.1|Name=mRNA_H-canaliculatus_F_contig1076.722.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=799bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1076:10747..11545- (Hapterophycus canaliculatus Oshoro5f female)
GAGGTGGTGGTCGGAGGTGACGAGCGTCAGGAGCGTCCTCCGTACCAGGA
AAGCCCTCGAACTCTTGCAAATGAAGCGCCAGGCGCCTTGTCCGACTCTG
CTAGAGAAACTCGACTGGGATTTCCTCCAGGTACTCCTCGAAGTCATGGT
GCCGTTCGCGGAGGCGACAGCGACGATGGAGGCCGACAAGACCCCCACCA
TCGGCATCTTGCTGGGCATGGTCGTCTTCTTGAAGAGGAAACTGAAGGAG
CTCGGGCAGCACAACAACCCGGCCATCCGCGCCGCTGCTGGGGACATGCT
CGAGGACTTGGATCAAAGGTGACACGGGATAGATGACCTAGTACATTAGC
ATGTACTGTATTGGACACCTTGCGTGTGGCGGCGCGCCCAGCCAGGACGT
CCTCGGCCAAAGTATTATACCTCGTCTGTAATTTACTGCTTTCCTCCCAT
CATATCTTTTTCCCACCCCAACATTACCACCATCACCAACACATGTGTTT
CCTTTGTGTTTGTCGCTAAACTACAGGTACACTCTGGACCCCTTCGCCGA
AGAGGGGCTTGGTACGTCAGGTTGCACCAAGATGCACCTTGTAGGCGCTG
CTCTCGACCCGAGGGCGAAAGTAATGGCTGGCGTACAGCGCAGTGTCAAG
CGGCAGGCGTTCGGATGCGTGGAGGCCCTTGGCGCCCAGATTATCGACGA
GAAGCTCGCAGAGGAGTTCGCGGGGAAGGACGGTGGTCCTTCGATCTTCG
GCGGGAGCTCCGCGGGATCGGACTCCAACGACGGACCAGGCGGAGATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1076:10747..11545-

>mRNA_H-canaliculatus_F_contig1076.722.1 ID=mRNA_H-canaliculatus_F_contig1076.722.1|Name=mRNA_H-canaliculatus_F_contig1076.722.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1182bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1076:10747..11545- (Hapterophycus canaliculatus Oshoro5f female)
GAGGTGGTGGTCGGAGGTGACGAGCGTCAGGAGCGTCCTCCGTACCAGGA
AAGCCCTCGAACTCTTGCAAATGAAGCGCCAGGCGCCTTGTCCGACTCTG
CTAGAGAAACTCGACTGGGATTTCCTCCAGGTACTCCTCGAAGTCATGGT
GCCGTTCGCGGAGGCGACAGCGACGATGGAGGCCGACAAGACCCCCACCA
TCGGCATCTTGCTGGGCATGGTCGTCTTCTTGAAGAGGAAACTGAAGGAG
CTCGGGCAGCACAACAACCCGGCCATCCGCGCCGCTGCTGGGGACATGCT
CGAGGACTTGGATCAAAGGAGGTGGTGGTCGGAGGTGACGAGCGTCAGGA
GCGTCCTCCGTACCAGGAAAGCCCTCGAACTCTTGCAAATGAAGCGCCAG
GCGCCTTGTCCGACTCTGCTAGAGAAACTCGACTGGGATTTCCTCCAGGT
ACTCCTCGAAGTCATGGTGCCGTTCGCGGAGGCGACAGCGACGATGGAGG
CCGACAAGACCCCCACCATCGGCATCTTGCTGGGCATGGTCGTCTTCTTG
AAGAGGAAACTGAAGGAGCTCGGGCAGCACAACAACCCGGCCATCCGCGC
CGCTGCTGGGGACATGCTCGAGGACTTGGATCAAAGGTACACTCTGGACC
CCTTCGCCGAAGAGGGGCTTGGTACGTCAGGTTGCACCAAGATGCACCTT
GTAGGCGCTGCTCTCGACCCGAGGGCGAAAGTAATGGCTGGCGTACAGCG
CAGTGTCAAGCGGCAGGCGTTCGGATGCGTGGAGGCCCTTGGCGCCCAGA
TTATCGACGAGAAGCTCGCAGAGGAGTTCGCGGGGAAGGACGGTGGTCCT
TCGATCTTCGGCGGGAGCTCCGCGGGATCGGACTCCAACGACGGACCAGG
CGGAGATGAGTACACTCTGGACCCCTTCGCCGAAGAGGGGCTTGGTACGT
CAGGTTGCACCAAGATGCACCTTGTAGGCGCTGCTCTCGACCCGAGGGCG
AAAGTAATGGCTGGCGTACAGCGCAGTGTCAAGCGGCAGGCGTTCGGATG
CGTGGAGGCCCTTGGCGCCCAGATTATCGACGAGAAGCTCGCAGAGGAGT
TCGCGGGGAAGGACGGTGGTCCTTCGATCTTCGGCGGGAGCTCCGCGGGA
TCGGACTCCAACGACGGACCAGGCGGAGATGA
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