mRNA_H-canaliculatus_F_contig10755.719.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10755.719.1
Unique NamemRNA_H-canaliculatus_F_contig10755.719.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10755.719.1 vs. uniprot
Match: A0A643C2B2_BALPH (Uncharacterized protein (Fragment) n=1 Tax=Balaenoptera physalus TaxID=9770 RepID=A0A643C2B2_BALPH)

HSP 1 Score: 87.0 bits (214), Expect = 6.830e-20
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGDCLQILEGHTDEIFSCAFNY 135
            FNPQG R+LT SSDK AR+WD  TG CLQ+LEGHTDEIFSCAFNY
Sbjct:   80 FNPQGNRLLTGSSDKTARIWDVQTGQCLQVLEGHTDEIFSCAFNY 124
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BLAST of mRNA_H-canaliculatus_F_contig10755.719.1 vs. uniprot
Match: A0A5N4E733_CAMDR (Dynein assembly factor with WDR repeat domains 1 n=1 Tax=Camelus dromedarius TaxID=9838 RepID=A0A5N4E733_CAMDR)

HSP 1 Score: 89.0 bits (219), Expect = 3.070e-19
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGDCLQILEGHTDEIFSCAFNY 135
            FNPQG+R+LT SSDK AR+WDA TG CLQ+LEGHTDEIFSCAFNY
Sbjct:  376 FNPQGSRLLTGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNY 420
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BLAST of mRNA_H-canaliculatus_F_contig10755.719.1 vs. uniprot
Match: A0A8D1EEP9_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1EEP9_PIG)

HSP 1 Score: 87.4 bits (215), Expect = 3.620e-19
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGDCLQILEGHTDEIFSCAFNY 135
            FNPQG R+LT S+DK AR+WDA TG CLQ+LEGHTDEIFSCAFNY
Sbjct:  228 FNPQGNRLLTGSADKTARIWDAQTGQCLQVLEGHTDEIFSCAFNY 272
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BLAST of mRNA_H-canaliculatus_F_contig10755.719.1 vs. uniprot
Match: A0A8D1K9R8_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1K9R8_PIG)

HSP 1 Score: 87.4 bits (215), Expect = 1.060e-18
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGDCLQILEGHTDEIFSCAFNY 135
            FNPQG R+LT S+DK AR+WDA TG CLQ+LEGHTDEIFSCAFNY
Sbjct:  351 FNPQGNRLLTGSADKTARIWDAQTGQCLQVLEGHTDEIFSCAFNY 395
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BLAST of mRNA_H-canaliculatus_F_contig10755.719.1 vs. uniprot
Match: A0A2G9RJ73_LITCT (Uncharacterized protein (Fragment) n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RJ73_LITCT)

HSP 1 Score: 82.8 bits (203), Expect = 4.400e-18
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGDCLQILEGHTDEIFSCAFNY 135
            FN QG+RILTASSDK A LWD  TG C+Q+LEGHTDEIFSCAFNY
Sbjct:  156 FNAQGSRILTASSDKTACLWDPQTGQCVQVLEGHTDEIFSCAFNY 200
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BLAST of mRNA_H-canaliculatus_F_contig10755.719.1 vs. uniprot
Match: A0A0G4GWY9_9ALVE (Uncharacterized protein (Fragment) n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GWY9_9ALVE)

HSP 1 Score: 76.3 bits (186), Expect = 7.500e-17
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGDCLQILEGHTDEIFSCAFNY 135
            F+P G ++LTASSD   RLW ADTG  LQ+LEGHTDEIFSCAFNY
Sbjct:    3 FSPNGAKVLTASSDWTCRLWRADTGALLQVLEGHTDEIFSCAFNY 47
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BLAST of mRNA_H-canaliculatus_F_contig10755.719.1 vs. uniprot
Match: A0A2P4TGK6_BAMTH (Uncharacterized protein n=1 Tax=Bambusicola thoracicus TaxID=9083 RepID=A0A2P4TGK6_BAMTH)

HSP 1 Score: 79.3 bits (194), Expect = 1.530e-16
Identity = 36/41 (87.80%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:   13 GTRILTASSDKVARLWDADTGDCLQILEGHTDEIFSCAFNY 135
            G RILTASSDK ARLWDA TG CLQ LEGHTDEIFSCAFNY
Sbjct:  153 GNRILTASSDKTARLWDAATGHCLQTLEGHTDEIFSCAFNY 193
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BLAST of mRNA_H-canaliculatus_F_contig10755.719.1 vs. uniprot
Match: A0A7J6LPN1_PEROL (U4 u6 small nuclear ribonucleoprotein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LPN1_PEROL)

HSP 1 Score: 80.1 bits (196), Expect = 4.200e-16
Identity = 31/45 (68.89%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGDCLQILEGHTDEIFSCAFNY 135
            F+P G R+LTA+SD   R+WD++TG+CLQ+LEGHTDE+FSCAFNY
Sbjct:  318 FSPTGCRVLTAASDHTCRVWDSNTGECLQVLEGHTDEVFSCAFNY 362
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BLAST of mRNA_H-canaliculatus_F_contig10755.719.1 vs. uniprot
Match: UPI0003F0EC26 (dynein assembly factor with WDR repeat domains 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0EC26)

HSP 1 Score: 78.6 bits (192), Expect = 1.520e-15
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGDCLQILEGHTDEIFSCA 126
            FNPQGT++LTAS+DK ARLW+  TG+CLQ+LEGHTDEIFSCA
Sbjct:  354 FNPQGTKLLTASADKTARLWNPLTGECLQVLEGHTDEIFSCA 395
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BLAST of mRNA_H-canaliculatus_F_contig10755.719.1 vs. uniprot
Match: A0A8C8ACZ8_9STRI (Uncharacterized protein n=1 Tax=Otus sunia TaxID=257818 RepID=A0A8C8ACZ8_9STRI)

HSP 1 Score: 72.4 bits (176), Expect = 1.710e-15
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 FNPQGTRILTASSDKVARLWDADTGDCLQILEGHTDEIF 117
            FNP+G  ILTASSDK ARLWDA TG CLQILEGHTDEIF
Sbjct:   25 FNPKGNCILTASSDKTARLWDAATGHCLQILEGHTDEIF 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10755.719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A643C2B2_BALPH6.830e-2080.00Uncharacterized protein (Fragment) n=1 Tax=Balaeno... [more]
A0A5N4E733_CAMDR3.070e-1982.22Dynein assembly factor with WDR repeat domains 1 n... [more]
A0A8D1EEP9_PIG3.620e-1980.00Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9... [more]
A0A8D1K9R8_PIG1.060e-1880.00Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9... [more]
A0A2G9RJ73_LITCT4.400e-1880.00Uncharacterized protein (Fragment) n=1 Tax=Lithoba... [more]
A0A0G4GWY9_9ALVE7.500e-1773.33Uncharacterized protein (Fragment) n=1 Tax=Chromer... [more]
A0A2P4TGK6_BAMTH1.530e-1687.80Uncharacterized protein n=1 Tax=Bambusicola thorac... [more]
A0A7J6LPN1_PEROL4.200e-1668.89U4 u6 small nuclear ribonucleoprotein n=1 Tax=Perk... [more]
UPI0003F0EC261.520e-1578.57dynein assembly factor with WDR repeat domains 1-l... [more]
A0A8C8ACZ8_9STRI1.710e-1584.62Uncharacterized protein n=1 Tax=Otus sunia TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10755contigH-canaliculatus_F_contig10755:3844..4650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score85.9
Seed ortholog evalue7.7e-15
Seed eggNOG ortholog9315.ENSMEUP00000012205
Preferred nameDAW1
KEGG koko:K19760
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
EggNOG free text desc.Dynein assembly factor with WDR repeat domains 1
EggNOG OGs3AFR9@33154,3B9C4@33208,3CZSY@33213,3JE5T@40674,489VX@7711,493NG@7742,4K0DU@9263,KOG0272@1,KOG0272@2759
COG Functional cat.A
Best tax levelMetatheria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928739.8936124-CDS-H-canaliculatus_F_contig10755:3843..38811622928739.8936124-CDS-H-canaliculatus_F_contig10755:3843..3881Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10755 3844..3881 -
1696845545.8989434-CDS-H-canaliculatus_F_contig10755:3843..38811696845545.8989434-CDS-H-canaliculatus_F_contig10755:3843..3881Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10755 3844..3881 -
1622928739.9091623-CDS-H-canaliculatus_F_contig10755:4493..46501622928739.9091623-CDS-H-canaliculatus_F_contig10755:4493..4650Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10755 4494..4650 -
1696845545.9130964-CDS-H-canaliculatus_F_contig10755:4493..46501696845545.9130964-CDS-H-canaliculatus_F_contig10755:4493..4650Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10755 4494..4650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10755.719.1prot_H-canaliculatus_F_contig10755.719.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10755 3844..4650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10755.719.1

>prot_H-canaliculatus_F_contig10755.719.1 ID=prot_H-canaliculatus_F_contig10755.719.1|Name=mRNA_H-canaliculatus_F_contig10755.719.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=65bp
FNPQGTRILTASSDKVARLWDADTGDCLQILEGHTDEIFSCAFNYEGDTI
ITGSKDNTCRLWRC*
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mRNA from alignment at H-canaliculatus_F_contig10755:3844..4650-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10755.719.1 ID=mRNA_H-canaliculatus_F_contig10755.719.1|Name=mRNA_H-canaliculatus_F_contig10755.719.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=807bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10755:3844..4650- (Hapterophycus canaliculatus Oshoro5f female)
TTTAACCCCCAAGGGACGCGGATCCTGACGGCTAGCAGCGATAAGGTGGC
TCGCCTTTGGGACGCAGACACGGGAGACTGCCTGCAGATACTGGAGGGAC
ACACGGACGAGATTTTCTCGTGCGCCTTCAACTACGAGGGAGACACCATC
ATCACAGGTTTGACATTGTGGAGCATCGCTAGAGGGTGGTTGAAAAGACG
CGGGGGGGTCGCGGCTTCCTCGTCCGCAGGCGAGGAGGCTTACGGTGTCG
TCACTCGCGAGATGAGCGGCGGGAAGGGGTGGAGAAGGCCTAGGGTTGCT
CGCGTTTCCAAGATGAGATTACAGTCGTCATTGTTGCTATGGTTGAGAGG
AGTCCCGCATGTGGTGGAATGGGGCCCCAGTGCCTTCGGCAACCAAGAGA
GGTTTATGGTGTCACCTGCGATGTGTACGCCAGCACGAGCCCTGGCATGT
TGAAGGGAAATGCACTGCGTCATCGGTTCGGGGGTGTTTAAAAAAGCCTG
GAGCGAGATAATAGGGCCAACGGCAGACGATGAACTGAAGACTGCCGAGG
TTCGTCTTGCTGATCCATACTTAGTGGGGAGTTCAAGGCGGATGAACGTG
TTTCCCAACTGAGCACTAAGACTTTTCGCCCGCCTTGCCCGCGTTGCCCC
GTATAAGGGTAAGCCTCACCAAGCATGAGCCAGAACATTTCATCTCACCT
GCGTCAGTCTTCACCTAGTGCTGGACGCTTCGATCTCTCCCTCGTGCTAC
ATATTGTACGGGCTCACAGGATCAAAGGACAACACCTGCCGGCTGTGGAG
GTGCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10755:3844..4650-

>mRNA_H-canaliculatus_F_contig10755.719.1 ID=mRNA_H-canaliculatus_F_contig10755.719.1|Name=mRNA_H-canaliculatus_F_contig10755.719.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=390bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10755:3844..4650- (Hapterophycus canaliculatus Oshoro5f female)
TTTAACCCCCAAGGGACGCGGATCCTGACGGCTAGCAGCGATAAGGTGGC
TCGCCTTTGGGACGCAGACACGGGAGACTGCCTGCAGATACTGGAGGGAC
ACACGGACGAGATTTTCTCGTGCGCCTTCAACTACGAGGGAGACACCATC
ATCACAGTTTAACCCCCAAGGGACGCGGATCCTGACGGCTAGCAGCGATA
AGGTGGCTCGCCTTTGGGACGCAGACACGGGAGACTGCCTGCAGATACTG
GAGGGACACACGGACGAGATTTTCTCGTGCGCCTTCAACTACGAGGGAGA
CACCATCATCACAGGATCAAAGGACAACACCTGCCGGCTGTGGAGGTGCT
GAGATCAAAGGACAACACCTGCCGGCTGTGGAGGTGCTGA
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