mRNA_H-canaliculatus_F_contig10677.648.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10677.648.1
Unique NamemRNA_H-canaliculatus_F_contig10677.648.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10677.648.1 vs. uniprot
Match: D8LU36_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU36_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 1.660e-60
Identity = 89/117 (76.07%), Postives = 98/117 (83.76%), Query Frame = 1
Query:    4 GADEHLDWMEDGRELWNGVSGLRPTILTGLPMGNWAEPQKAGRPHRKWCKRELGEHVPVITCMSRDKHIYCRAGNVLIDDRASLAEAWERAGGVFIHHTSASSSLAKLKTLLPEEAE 354
            G  EHLDWM DGRELW+GV+ L+PTILTGLPMGNWAEPQK     R WCKRELGEHVPVITCMSRDKH +CR GN+LIDDR SL  AW+RAGGVFIHHT+A+SSL KLK +LP E E
Sbjct:   80 GFYEHLDWMPDGRELWDGVAHLQPTILTGLPMGNWAEPQK-----RNWCKRELGEHVPVITCMSRDKHTHCRPGNILIDDRESLKAAWQRAGGVFIHHTAATSSLEKLKAILPAEEE 191          
BLAST of mRNA_H-canaliculatus_F_contig10677.648.1 vs. uniprot
Match: A0A835Z4N0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N0_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.160e-40
Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 1
Query:   19 LDWMEDGRELWNGVSGLRPTILTGLPMGNWAEPQKAGRPHRKWCKRELGE--HVPVITCMSRDKHIYCRA-GNVLIDDRASLAEAWERAGGVFIHHTSASSSLAKLKTLLP 342
            L WM+DG++LW  + G +P ILTGLP+G WA PQK     R+WC+RELG+   VPVITCMSRDKH YCR  G++LIDDR +  E WE AGGVF+ HTSA  S+A L+ LLP
Sbjct:   30 LPWMKDGKQLWEFIRGYKPAILTGLPLGQWAAPQK-----RRWCQRELGKPSDVPVITCMSRDKHTYCRVPGSILIDDRITAKEPWEAAGGVFVFHTSAQQSIADLQKLLP 135          
BLAST of mRNA_H-canaliculatus_F_contig10677.648.1 vs. uniprot
Match: H9UJ11_SPIAZ (Uncharacterized protein n=1 Tax=Spirochaeta africana (strain ATCC 700263 / DSM 8902 / Z-7692) TaxID=889378 RepID=H9UJ11_SPIAZ)

HSP 1 Score: 139 bits (349), Expect = 1.060e-39
Identity = 68/121 (56.20%), Postives = 79/121 (65.29%), Query Frame = 1
Query:    1 PGADEHLDWMEDGRELWNGVSGLRPTILTGLPMGNWAEPQKAGRPHRKWCKRELGEHVPVITCMSRDKHIYCRAGN------VLIDDRASLAEAWERAGGVFIHHTSASSSLAKLKTLLPE 345
            PG    L W  DG +LW     L PTILTGLP G+WAEPQK     R+WC RELG  VPVITCMSRDKH+            +L+DDR  LAEAWE AGGVFIHHTSA++S+ +L  L P+
Sbjct:   45 PGFYASLHWTPDGADLWEFARRLSPTILTGLPRGSWAEPQK-----REWCARELGSTVPVITCMSRDKHLQAEQARQVGMTAILVDDRQRLAEAWEAAGGVFIHHTSAAASIEQLSGLYPD 160          
BLAST of mRNA_H-canaliculatus_F_contig10677.648.1 vs. uniprot
Match: A0A7S4LFG0_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LFG0_9EUGL)

HSP 1 Score: 133 bits (334), Expect = 5.880e-36
Identity = 58/106 (54.72%), Postives = 75/106 (70.75%), Query Frame = 1
Query:   19 LDWMEDGRELWNGVSGLRPTILTGLPMGNWAEPQKAGRPHRKWCKRELGEHVPVITCMSRDKHIYCRAGNVLIDDRASLAEAWERAGGVFIHHTSASSSLAKLKTL 336
            LDWMEDG++LWN +  L+P IL+G+P+G WA  QK     R+W  RELG HV V+TC++ DKH++CR G VLIDD   L   WE AGGVF+HH S  ++L +LK L
Sbjct:  184 LDWMEDGKQLWNAIKPLQPKILSGVPLGEWAAEQK-----RRWVARELGWHVKVLTCLAADKHLHCREGAVLIDDSVKLRGDWEAAGGVFVHHQSTKATLKQLKQL 284          
BLAST of mRNA_H-canaliculatus_F_contig10677.648.1 vs. uniprot
Match: A0A7S4GJQ1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GJQ1_9EUGL)

HSP 1 Score: 130 bits (326), Expect = 1.750e-35
Identity = 59/111 (53.15%), Postives = 73/111 (65.77%), Query Frame = 1
Query:    4 GADEHLDWMEDGRELWNGVSGLRPTILTGLPMGNWAEPQKAGRPHRKWCKRELGEHVPVITCMSRDKHIYCRAGNVLIDDRASLAEAWERAGGVFIHHTSASSSLAKLKTL 336
            G  + L+W EDG+ LW  +  L P ILTGLP G WA PQK     RKWC RELG    VITC +  K  YCR G++LIDD   L +AWE+AGG+FIHHT+ + +L KL+ L
Sbjct:   79 GFFDQLEWTEDGQRLWTAIRHLHPVILTGLPQGTWAAPQK-----RKWCARELGCATKVITCKALQKCKYCRTGSLLIDDNLDLQQAWEKAGGIFIHHTTTARTLRKLQAL 184          
BLAST of mRNA_H-canaliculatus_F_contig10677.648.1 vs. uniprot
Match: A0A4R4D4C3_9PROT (Uncharacterized protein n=2 Tax=Acetobacteraceae TaxID=433 RepID=A0A4R4D4C3_9PROT)

HSP 1 Score: 127 bits (320), Expect = 2.730e-35
Identity = 60/106 (56.60%), Postives = 75/106 (70.75%), Query Frame = 1
Query:   19 LDWMEDGRELWNGVSGLRPTILTGLPMGNWAEPQKAGRPHRKWCKRELGEHVPVITCMSRDKHIYCRAGNVLIDDRASLAEAWERAGGVFIHHTSASSSLAKLKTL 336
            L++M D   LW   + LRPTILTGLP+G+WA  QK     + W  R LG HVP+ITCMSRDK  +   G+VL+DDRAS AE WER GG+FIHH+SA  S+A+L+ L
Sbjct:   57 LEFMHDAEVLWAFCAPLRPTILTGLPLGSWAPAQK-----KAWVARMLGAHVPIITCMSRDKPRWSGPGHVLVDDRASAAEGWERKGGIFIHHSSAERSIARLRAL 157          
BLAST of mRNA_H-canaliculatus_F_contig10677.648.1 vs. uniprot
Match: A0A7S3XQ39_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ39_HETAK)

HSP 1 Score: 130 bits (327), Expect = 4.390e-35
Identity = 63/106 (59.43%), Postives = 71/106 (66.98%), Query Frame = 1
Query:   19 LDWMEDGRELWNGVSGLRPTILTGLPMGNWAEPQKAGRPHRKWCKRELGEHVPVITCMSRDKHIYCRAGNVLIDDRASLAEAWERAGGVFIHHTSASSSLAKLKTL 336
            L WM DG+ELW+ +   RPTILTGLPMG WAE QK     R WC RELG  VPV TC+SRDK    R G VL+DDR SL E W  AGGVFIHH S S ++ +L  L
Sbjct:  144 LSWMPDGKELWDRIQSQRPTILTGLPMGRWAEAQK-----RAWCARELGAGVPVDTCLSRDKWRRARPGAVLVDDRFSLQEKWVEAGGVFIHHQSTSQTIDQLTDL 244          
BLAST of mRNA_H-canaliculatus_F_contig10677.648.1 vs. uniprot
Match: A0A2U1V4Q9_9PROT (Uncharacterized protein n=1 Tax=Roseomonas aestuarii TaxID=568898 RepID=A0A2U1V4Q9_9PROT)

HSP 1 Score: 126 bits (317), Expect = 6.350e-35
Identity = 60/108 (55.56%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   13 EHLDWMEDGRELWNGVSGLRPTILTGLPMGNWAEPQKAGRPHRKWCKRELGEHVPVITCMSRDKHIYCRAGNVLIDDRASLAEAWERAGGVFIHHTSASSSLAKLKTL 336
            E L++M D +ELW   +   PTILTGLP+G WA  QK     R+W  R LG HVPVITCMSR+K  +   G+VL+DDRAS AE WE+ GGVF+HH SA+ S+A L+ L
Sbjct:   47 ETLEFMHDAQELWRFCAPCHPTILTGLPLGAWAPEQK-----RRWVARMLGAHVPVITCMSREKPRWSGPGHVLVDDRASAAEGWEKKGGVFVHHRSAAGSIAALRAL 149          
BLAST of mRNA_H-canaliculatus_F_contig10677.648.1 vs. uniprot
Match: V5WIQ5_9SPIO (Uncharacterized protein n=2 Tax=Salinispira pacifica TaxID=1307761 RepID=V5WIQ5_9SPIO)

HSP 1 Score: 125 bits (315), Expect = 1.240e-34
Identity = 65/108 (60.19%), Postives = 72/108 (66.67%), Query Frame = 1
Query:   19 LDWMEDGRELWNGVSGLRPTILTGLPMGNWAEPQKAGRPHRKWCKRELGEHVPVITCMSRDKHIYCR--AGN---VLIDDRASLAEAWERAGGVFIHHTSASSSLAKL 327
            L WM DGR+LW+ +  + P ILTGLPMGNWAE QK     R WC RELGE V VITCMSR+K    R  AG    VLIDDR  L EAWE  GG+FIHHT A  SL +L
Sbjct:   47 LHWMPDGRQLWDELKHMNPVILTGLPMGNWAEAQK-----RSWCARELGEDVEVITCMSREKAKKARERAGTRIPVLIDDRLRLKEAWEEMGGIFIHHTDAVKSLRQL 149          
BLAST of mRNA_H-canaliculatus_F_contig10677.648.1 vs. uniprot
Match: A0A5B2TB82_9PROT (Uncharacterized protein n=1 Tax=Roseomonas oryzae TaxID=1608942 RepID=A0A5B2TB82_9PROT)

HSP 1 Score: 125 bits (315), Expect = 1.610e-34
Identity = 63/108 (58.33%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   13 EHLDWMEDGRELWNGVSGLRPTILTGLPMGNWAEPQKAGRPHRKWCKRELGEHVPVITCMSRDKHIYCRAGNVLIDDRASLAEAWERAGGVFIHHTSASSSLAKLKTL 336
            E L +M D   LW   +   PTILTGLPMG+WA  QK     ++W  R LG HVPVITCMSRDK  +   G+VL+DDRAS AE WER GGVFIHH SA+SS+A L  L
Sbjct:   46 ETLAFMHDAEVLWRFCAPHHPTILTGLPMGSWAPAQK-----KRWVARMLGAHVPVITCMSRDKPRWSGPGHVLVDDRASAAEGWERKGGVFIHHVSAASSIAALHRL 148          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10677.648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU36_ECTSI1.660e-6076.07Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z4N0_9STRA2.160e-4060.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
H9UJ11_SPIAZ1.060e-3956.20Uncharacterized protein n=1 Tax=Spirochaeta africa... [more]
A0A7S4LFG0_9EUGL5.880e-3654.72Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4GJQ1_9EUGL1.750e-3553.15Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A4R4D4C3_9PROT2.730e-3556.60Uncharacterized protein n=2 Tax=Acetobacteraceae T... [more]
A0A7S3XQ39_HETAK4.390e-3559.43Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A2U1V4Q9_9PROT6.350e-3555.56Uncharacterized protein n=1 Tax=Roseomonas aestuar... [more]
V5WIQ5_9SPIO1.240e-3460.19Uncharacterized protein n=2 Tax=Salinispira pacifi... [more]
A0A5B2TB82_9PROT1.610e-3458.33Uncharacterized protein n=1 Tax=Roseomonas oryzae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10677contigH-canaliculatus_F_contig10677:1410..2456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score131.7
Seed ortholog evalue2e-28
Seed eggNOG ortholog889378.Spiaf_1441
EggNOG OGs2D94Q@1,32TSM@2
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-16_000080.1
Exons3
Model size354
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10677.648.1prot_H-canaliculatus_F_contig10677.648.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10677 1437..2456 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928728.0620036-UTR-H-canaliculatus_F_contig10677:1409..14361622928728.0620036-UTR-H-canaliculatus_F_contig10677:1409..1436Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10677 1410..1436 +
1696845540.7527761-UTR-H-canaliculatus_F_contig10677:1409..14361696845540.7527761-UTR-H-canaliculatus_F_contig10677:1409..1436Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10677 1410..1436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928728.0792203-CDS-H-canaliculatus_F_contig10677:1436..15471622928728.0792203-CDS-H-canaliculatus_F_contig10677:1436..1547Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10677 1437..1547 +
1696845540.764581-CDS-H-canaliculatus_F_contig10677:1436..15471696845540.764581-CDS-H-canaliculatus_F_contig10677:1436..1547Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10677 1437..1547 +
1622928728.0917113-CDS-H-canaliculatus_F_contig10677:1938..20451622928728.0917113-CDS-H-canaliculatus_F_contig10677:1938..2045Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10677 1939..2045 +
1696845540.7743018-CDS-H-canaliculatus_F_contig10677:1938..20451696845540.7743018-CDS-H-canaliculatus_F_contig10677:1938..2045Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10677 1939..2045 +
1622928728.1048944-CDS-H-canaliculatus_F_contig10677:2347..24561622928728.1048944-CDS-H-canaliculatus_F_contig10677:2347..2456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10677 2348..2456 +
1696845540.7837682-CDS-H-canaliculatus_F_contig10677:2347..24561696845540.7837682-CDS-H-canaliculatus_F_contig10677:2347..2456Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10677 2348..2456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10677.648.1

>prot_H-canaliculatus_F_contig10677.648.1 ID=prot_H-canaliculatus_F_contig10677.648.1|Name=mRNA_H-canaliculatus_F_contig10677.648.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
MEDGRELWNGVSGLRPTILTGLPMGNWAEPQKAGRPHRKWCKRELGEHVP
VITCMSRDKHIYCRAGNVLIDDRASLAEAWERAGGVFIHHTSASSSLAKL
KTLLPEEAE
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mRNA from alignment at H-canaliculatus_F_contig10677:1410..2456+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10677.648.1 ID=mRNA_H-canaliculatus_F_contig10677.648.1|Name=mRNA_H-canaliculatus_F_contig10677.648.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1047bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10677:1410..2456+ (Hapterophycus canaliculatus Oshoro5f female)
CCTGGAGCAGATGAACACTTGGACTGGATGGAGGACGGGAGAGAGCTGTG GAACGGGGTGTCAGGTCTCCGGCCGACGATCCTCACCGGGCTGCCGATGG GAAATTGGGCGGAGCCGCAGAAGGCAGGTCGACCGCACGTGTTCGGCCTG GAGAATTATTGCCGTCCAGTTCCCATCTTCGCCGTGTGATCTCTCTCTTC CTCCAGAGAGAGCTTTTGACGGATTTGAACTCAGGCGTTATGCGTTGGAG GCGACGAAATCAAACTTTCACTGCCAGGATCGGCACACAACGACGAACGA ACACATATACCCTAGGGTGACGGAAAAATCGGTCCGCCGTCGGGTTATCA AAAATTGCTTGAAGAGACACACGACCCAGACTGGTTCCGAGACGGGTGCG CACGCTAGGCATCGAGGGGATCGCACTATGCATTGTGAAGGATGCATGCA CATGATCACACGGAGCTTTGTTTGTTTAGTTTTCAACAACGTTTGATTCG GGGGCGCTTCTGGTTGCTGCCTTCAACAGAGAAAGTGGTGCAAGCGAGAG CTTGGCGAACACGTACCGGTGATCACGTGCATGTCGAGGGATAAGCATAT ATACTGCCGCGCAGGGAACGTGCTCATCGACGACAGGTATGAGATTTGAC TGGGGACCTTCGGTGCGGGCTCGAGTCGTCTGTGCTCTATATTATGTTTG ATGTCGGCCCGGGTGGTCGGGATTGAACGGATCCTCCTCGGCGAGAAAAG CTCGCCAGATTTGCGAGACAAGTCAAAGGAGGGAGATGTAGTTGCTGAAC ACCGGGCGACAAACAACGAACGCGCACGTCATATTGCAAAGCTGAAGGTA TACACAAACTCACGAAGCACTCGAGGCTGGACCTTTTTGGTGATCCCATC GGTCGTTTTCGCCACCCCTTGTCGTCGACTGCTTGCAGAGCGTCGCTGGC AGAGGCGTGGGAGCGAGCAGGCGGCGTTTTTATTCACCACACAAGCGCGA GCTCGTCGTTGGCGAAGCTGAAGACGTTGCTGCCGGAAGAAGCAGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10677:1410..2456+

>mRNA_H-canaliculatus_F_contig10677.648.1 ID=mRNA_H-canaliculatus_F_contig10677.648.1|Name=mRNA_H-canaliculatus_F_contig10677.648.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10677:1410..2456+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGACGGGAGAGAGCTGTGGAACGGGGTGTCAGGTCTCCGGCCGAC
GATCCTCACCGGGCTGCCGATGGGAAATTGGGCGGAGCCGCAGAAGGCAG
GTCGACCGCACATGGAGGACGGGAGAGAGCTGTGGAACGGGGTGTCAGGT
CTCCGGCCGACGATCCTCACCGGGCTGCCGATGGGAAATTGGGCGGAGCC
GCAGAAGGCAGGTCGACCGCACAGAAAGTGGTGCAAGCGAGAGCTTGGCG
AACACGTACCGGTGATCACGTGCATGTCGAGGGATAAGCATATATACTGC
CGCGCAGGGAACGTGCTCATCGACGACAGAGAAAGTGGTGCAAGCGAGAG
CTTGGCGAACACGTACCGGTGATCACGTGCATGTCGAGGGATAAGCATAT
ATACTGCCGCGCAGGGAACGTGCTCATCGACGACAGAGCGTCGCTGGCAG
AGGCGTGGGAGCGAGCAGGCGGCGTTTTTATTCACCACACAAGCGCGAGC
TCGTCGTTGGCGAAGCTGAAGACGTTGCTGCCGGAAGAAGCAGAGAGCGT
CGCTGGCAGAGGCGTGGGAGCGAGCAGGCGGCGTTTTTATTCACCACACA
AGCGCGAGCTCGTCGTTGGCGAAGCTGAAGACGTTGCTGCCGGAAGAAGC
AGAG
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