mRNA_H-canaliculatus_F_contig1067.640.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1067.640.1
Unique NamemRNA_H-canaliculatus_F_contig1067.640.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1067.640.1 vs. uniprot
Match: D8LQH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQH3_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 3.670e-32
Identity = 110/219 (50.23%), Postives = 128/219 (58.45%), Query Frame = 3 
Query:    9 NEDRDRSHAMPSRSGSMSPPPRRSVKPLPRAVIASQQWKPTTGAGEITSXXXXXXXXXXXXXXXXXSRHAPRASLEAASPLALSRWDAPLPATATPAPSSS-------SVLLRTGAEA-PTSWVERVRKMPTVAPT-RPSSPNVVHRMAVGGAG----ARTPPP---EGNGPSATSLPMLGPGPMPTAPPGAVVKYPSEPPDNLALLSTVASPEGYSVP 617
            N++RDRS     RSGSMSPPPRRSV+PL RA IASQ W+PTTG   +                   S  A  AS   +S  +L RW     A A  APSSS       SVLL + A A P+ WV+RVRKMPT+A + R SSPNVVHRM   G G     R+P P   + N  S  S+ ML PGPMP+A P   VKY SEP DNLALLSTVA+P GY+ P
Sbjct:  496 NDNRDRS-----RSGSMSPPPRRSVRPLSRAAIASQSWQPTTGGAAMP----------------IPSSSAGGASGRESS-ASLPRWSGGGAAPAG-APSSSCSSGVHRSVLLGSNAAAAPSDWVDRVRKMPTIASSPRASSPNVVHRMGGNGGGNGGDVRSPSPRQEDNNCTSPRSMGMLHPGPMPSAAPSVGVKYMSEPRDNLALLSTVAAPGGYNNP 691
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BLAST of mRNA_H-canaliculatus_F_contig1067.640.1 vs. uniprot
Match: A0A6H5K6R5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6R5_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.080e-15
Identity = 47/79 (59.49%), Postives = 56/79 (70.89%), Query Frame = 3 
Query:  435 GAGARTPPPEGNGPSATS---LPMLGPGPMPTAPPGAVVKYPSEPPDNLALLSTVASPEGYSVPPRRSSFDDRSGMERQ 662
            G   R+P P   G + TS   + ML PGPMPTA P   VKY SEP DNLALLSTVA+P  Y+ PPRR+S++DRSG+ERQ
Sbjct:    9 GGDVRSPSPRQEGNNITSPRFMGMLHPGPMPTAAPNVGVKYMSEPCDNLALLSTVAAPGAYNNPPRRASYEDRSGVERQ 87
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BLAST of mRNA_H-canaliculatus_F_contig1067.640.1 vs. uniprot
Match: A0A6H5K1B7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B7_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 1.040e-6
Identity = 32/44 (72.73%), Postives = 36/44 (81.82%), Query Frame = 3 
Query:    6 TNEDRDRSHAMPSRSGSMSPPPRRSVKPLPRAVIASQQWKPTTG 137
            TN++RD     P RSGSMSPPPRRSV+PL RAVIASQ W+PTTG
Sbjct:  799 TNDNRD-----PPRSGSMSPPPRRSVRPLSRAVIASQSWQPTTG 837
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1067.640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQH3_ECTSI3.670e-3250.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6R5_9PHAE2.080e-1559.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1B7_9PHAE1.040e-672.73Zn(2)-C6 fungal-type domain-containing protein (Fr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1067contigH-canaliculatus_F_contig1067:154..852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size700
Cds size669
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928724.2506475-UTR-H-canaliculatus_F_contig1067:153..1831622928724.2506475-UTR-H-canaliculatus_F_contig1067:153..183Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1067 154..183 +
1696845540.2569234-UTR-H-canaliculatus_F_contig1067:153..1831696845540.2569234-UTR-H-canaliculatus_F_contig1067:153..183Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1067 154..183 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928724.2603548-CDS-H-canaliculatus_F_contig1067:183..8521622928724.2603548-CDS-H-canaliculatus_F_contig1067:183..852Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1067 184..852 +
1696845540.267992-CDS-H-canaliculatus_F_contig1067:183..8521696845540.267992-CDS-H-canaliculatus_F_contig1067:183..852Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1067 184..852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1067.640.1prot_H-canaliculatus_F_contig1067.640.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1067 184..852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1067.640.1

>prot_H-canaliculatus_F_contig1067.640.1 ID=prot_H-canaliculatus_F_contig1067.640.1|Name=mRNA_H-canaliculatus_F_contig1067.640.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=223bp
MRCQADRVPCPHHPDALSSRSLVLSSLVNSGSQPRVPERSPAAAALAAAA
TTATTAAAAADMLHAQAWKQRRRWRCLDGTPLYRQQPRRPPRRRPCCSGR
APKPRPAGSSGCGRCRRSRRRARPARTSSTAWPLAGPARGPLRRKATDRA
PLPYPCWAPVRCPRRHQAQSSNTRPSPPTTSRCCLRWRRPRDTACLRDGA
PSMIGAAWRDSSSRSGDNGVLHT
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mRNA from alignment at H-canaliculatus_F_contig1067:154..852+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1067.640.1 ID=mRNA_H-canaliculatus_F_contig1067.640.1|Name=mRNA_H-canaliculatus_F_contig1067.640.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=699bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1067:154..852+ (Hapterophycus canaliculatus Oshoro5f female)
AGAAGACCAACGAGGACAGAGACCGGTCCCATGCGATGCCAAGCAGATCG
GGTTCCATGTCCCCACCACCCCGACGCTCTGTCAAGCCGCTCCCTCGTGC
TGTCATCGCTAGTCAACAGTGGAAGCCAACCACGGGTGCCGGAGAGATCA
CCAGCAGCAGCAGCGCTGGCAGCAGCAGCAACAACAGCAACAACAGCAGC
AGCAGCAGCAGACATGCTCCACGCGCAAGCCTGGAAGCAGCGTCGCCGCT
GGCGCTGTCTAGATGGGACGCCCCTCTACCGGCAACAGCCACGCCGGCCC
CCTCGTCGTCGTCCGTGTTGCTCAGGACGGGCGCCGAAGCCCCGACCAGC
TGGGTCGAGCGGGTGCGGAAGATGCCGACGGTCGCGCCGACGCGCCCGTC
CAGCCCGAACGTCGTCCACCGCATGGCCGTTGGCGGGGCCGGCGCGCGGA
CCCCTCCGCCGGAAGGCAACGGACCGAGCGCCACTTCCCTACCCATGTTG
GGCCCCGGTCCGATGCCCACGGCGCCACCAGGCGCAGTCGTCAAATACCC
GTCCGAGCCCCCCGACAACCTCGCGCTGCTGTCTACGGTGGCGTCGCCCG
AGGGATACAGCGTGCCTCCGCGACGGAGCTCCTTCGATGATAGGAGCGGC
ATGGAGAGACAGCAGCAGCCGGTCGGGCGACAACGGCGTTCTGCACACA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1067:154..852+

>mRNA_H-canaliculatus_F_contig1067.640.1 ID=mRNA_H-canaliculatus_F_contig1067.640.1|Name=mRNA_H-canaliculatus_F_contig1067.640.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1338bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1067:154..852+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCGATGCCAAGCAGATCGGGTTCCATGTCCCCACCACCCCGACGCTCT
GTCAAGCCGCTCCCTCGTGCTGTCATCGCTAGTCAACAGTGGAAGCCAAC
CACGGGTGCCGGAGAGATCACCAGCAGCAGCAGCGCTGGCAGCAGCAGCA
ACAACAGCAACAACAGCAGCAGCAGCAGCAGACATGCTCCACGCGCAAGC
CTGGAAGCAGCGTCGCCGCTGGCGCTGTCTAGATGGGACGCCCCTCTACC
GGCAACAGCCACGCCGGCCCCCTCGTCGTCGTCCGTGTTGCTCAGGACGG
GCGCCGAAGCCCCGACCAGCTGGGTCGAGCGGGTGCGGAAGATGCCGACG
GTCGCGCCGACGCGCCCGTCCAGCCCGAACGTCGTCCACCGCATGGCCGT
TGGCGGGGCCGGCGCGCGGACCCCTCCGCCGGAAGGCAACGGACCGAGCG
CCACTTCCCTACCCATGTTGGGCCCCGGTCCGATGCCCACGGCGCCACCA
GGCGCAGTCGTCAAATACCCGTCCGAGCCCCCCGACAACCTCGCGCTGCT
GTCTACGGTGGCGTCGCCCGAGGGATACAGCGTGCCTCCGCGACGGAGCT
CCTTCGATGATAGGAGCGGCATGGAGAGACAGCAGCAGCCGGTCGGGCGA
CAACGGCGTTCTGCACACAATGCGATGCCAAGCAGATCGGGTTCCATGTC
CCCACCACCCCGACGCTCTGTCAAGCCGCTCCCTCGTGCTGTCATCGCTA
GTCAACAGTGGAAGCCAACCACGGGTGCCGGAGAGATCACCAGCAGCAGC
AGCGCTGGCAGCAGCAGCAACAACAGCAACAACAGCAGCAGCAGCAGCAG
ACATGCTCCACGCGCAAGCCTGGAAGCAGCGTCGCCGCTGGCGCTGTCTA
GATGGGACGCCCCTCTACCGGCAACAGCCACGCCGGCCCCCTCGTCGTCG
TCCGTGTTGCTCAGGACGGGCGCCGAAGCCCCGACCAGCTGGGTCGAGCG
GGTGCGGAAGATGCCGACGGTCGCGCCGACGCGCCCGTCCAGCCCGAACG
TCGTCCACCGCATGGCCGTTGGCGGGGCCGGCGCGCGGACCCCTCCGCCG
GAAGGCAACGGACCGAGCGCCACTTCCCTACCCATGTTGGGCCCCGGTCC
GATGCCCACGGCGCCACCAGGCGCAGTCGTCAAATACCCGTCCGAGCCCC
CCGACAACCTCGCGCTGCTGTCTACGGTGGCGTCGCCCGAGGGATACAGC
GTGCCTCCGCGACGGAGCTCCTTCGATGATAGGAGCGGCATGGAGAGACA
GCAGCAGCCGGTCGGGCGACAACGGCGTTCTGCACACA
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