mRNA_H-canaliculatus_F_contig10629.612.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10629.612.1
Unique NamemRNA_H-canaliculatus_F_contig10629.612.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10629.612.1 vs. uniprot
Match: A0A6H5JC72_9PHAE (GLOBIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC72_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 2.430e-51
Identity = 92/110 (83.64%), Postives = 102/110 (92.73%), Query Frame = 2 
Query:   32 GDGVRVNPWRQMKLHELMAKLEDSSAEDTETNFANIGEAILLHLKPSEPPTTRALALDVAQTFVQNVLSERSKDKRSSKIRRRAFKELLAHLIPLMLDCLKSPEGTGNSN 361
            G+  RVNPWRQMKLHELMAKLEDS+ E+TE +F NIG+AILLHL+PSEPPTTRALALDVAQTFVQNV+SERSKDKRSSKIRR+AFKELLA LIPLMLDCLKSP G+ NS+
Sbjct:  829 GERGRVNPWRQMKLHELMAKLEDSTPEETEASFGNIGDAILLHLRPSEPPTTRALALDVAQTFVQNVVSERSKDKRSSKIRRKAFKELLARLIPLMLDCLKSPAGSSNSS 938
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BLAST of mRNA_H-canaliculatus_F_contig10629.612.1 vs. uniprot
Match: D7FHK6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHK6_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 7.160e-49
Identity = 89/99 (89.90%), Postives = 95/99 (95.96%), Query Frame = 2 
Query:   65 MKLHELMAKLEDSSAEDTETNFANIGEAILLHLKPSEPPTTRALALDVAQTFVQNVLSERSKDKRSSKIRRRAFKELLAHLIPLMLDCLKSPEGTGNSN 361
            MKLHELMAKLEDS+AE+TE +F NIGEAIL HLKPSEPPTTRALALDVAQTFVQNVLSERSKDKRSSKIRRRAFKELLAHLIPLMLDCLKSPEG+ +S+
Sbjct:    1 MKLHELMAKLEDSTAEETEASFGNIGEAILFHLKPSEPPTTRALALDVAQTFVQNVLSERSKDKRSSKIRRRAFKELLAHLIPLMLDCLKSPEGSSSSS 99
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10629.612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JC72_9PHAE2.430e-5183.64GLOBIN domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FHK6_ECTSI7.160e-4989.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10629contigH-canaliculatus_F_contig10629:1328..3092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size408
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10629.612.1prot_H-canaliculatus_F_contig10629.612.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10629 1328..3092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928719.7839894-CDS-H-canaliculatus_F_contig10629:1327..14671622928719.7839894-CDS-H-canaliculatus_F_contig10629:1327..1467Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10629 1328..1467 -
1696845538.1675553-CDS-H-canaliculatus_F_contig10629:1327..14671696845538.1675553-CDS-H-canaliculatus_F_contig10629:1327..1467Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10629 1328..1467 -
1622928719.8072262-CDS-H-canaliculatus_F_contig10629:2138..23001622928719.8072262-CDS-H-canaliculatus_F_contig10629:2138..2300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10629 2139..2300 -
1696845538.1833675-CDS-H-canaliculatus_F_contig10629:2138..23001696845538.1833675-CDS-H-canaliculatus_F_contig10629:2138..2300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10629 2139..2300 -
1622928719.8188071-CDS-H-canaliculatus_F_contig10629:2986..30921622928719.8188071-CDS-H-canaliculatus_F_contig10629:2986..3092Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10629 2987..3092 -
1696845538.1945806-CDS-H-canaliculatus_F_contig10629:2986..30921696845538.1945806-CDS-H-canaliculatus_F_contig10629:2986..3092Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10629 2987..3092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10629.612.1

>prot_H-canaliculatus_F_contig10629.612.1 ID=prot_H-canaliculatus_F_contig10629.612.1|Name=mRNA_H-canaliculatus_F_contig10629.612.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=136bp
GRRRRWRQGGGGWGEGKPLETDEAARAHGEAGRQLGGGYGDELRKYRRGY
PVAFEAVRAADYASPRAGRGPDVRAERAQRAFEGQTLFQDSEESLQGAPR
TPDTPHAGLPQEPGGHRQLQRQRLSGRKRLLHRERP
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mRNA from alignment at H-canaliculatus_F_contig10629:1328..3092-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10629.612.1 ID=mRNA_H-canaliculatus_F_contig10629.612.1|Name=mRNA_H-canaliculatus_F_contig10629.612.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1765bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10629:1328..3092- (Hapterophycus canaliculatus Oshoro5f female)
GGCAGGAGGAGGCGGTGGCGGCAGGGAGGGGGGGGATGGGGTGAGGGTAA
ACCCTTGGAGACAGATGAAGCTGCACGAGCTCATGGCGAAGCTGGAAGAC
AGCTCGGTGAGGCCATAGCCGCTTGCCGTGGCCTTTTTTAGGGTGTTGTT
GTTGTTGTTGTTTTTGTTGTTGTTGCTGGGGATACTTGTAGCCGGTGGTG
AGGTGGAGGCGTTGCCGTTGTCGTCGTCGGTGCCGTCTGTACTGCTTCCG
GTGGTATCGGCGGCGTGGTCTCGAACCCATCGCCTCTCGCTTGCTTTGGA
TGCCGCGATCGATGGGTGGATTGAAACCCCGCCTGACGGGGAGACAGAGA
GTGAGCCAGCAGCTCTTGGCCGCGGGGCGCAAGAGAAGCCCCGACGGTGC
CTGTACTTCATGTTGGTTCCGCCGGCACCCCCACCCCCGTTGACGTCGTG
CCTGCCACCTTCCGTGTTGAAACCCGATCCCTTCCCTTCTAACCTGTATG
CATATTTTTGCTGAGATTTACCCCTCCCCCACGCCCCTATCATCGGCCTT
CCACTCATTACAAGGCCTGCCGACGATGGCGGGATGAGGCGATCCCGTCT
CGTCCTCCCCCCCCCTACCCCCGTTTTCCACAGACACGGTGGGATTTTAG
CAGCGAAACTTTCTGCGGCAGTGATGCGAATTGCGACGGTCGCACTTTGT
CTCTCTCTTTCTTTTTTTTTTGGTCGCGAAACGCTCGTAAAAGTCCGTCC
GTCCTGCGTCCGTGTGGTGGGTAAAAATGTCCGACGCTCAAGGCGGAGGA
TACGGAGACGAACTTCGCAAATATCGGCGAGGCTATCCTGTTGCATTTGA
AGCCGTCAGAGCCGCCGACTACGCGAGCCCTCGCGCTGGACGTGGCCCAG
ACGTTCGTGCAGAACGTGCTCAGCGAGCGTTCGAAGGACAAACGCTCTTC
CAAGGTGCGGCGCTGGTGGTGGTGGTGGTCGTCGTGTTGATCGCATTTTC
GTCGTTGTCGTCGTTGTCGTCGTCGTCGTCGTCGTTGTTGTTGTTGTTGT
TGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTGCTGTTGTTGTTGGTACGA
TAGTTTGCCGTAGTTCTGTTCTGAGGGCAACAGCGAGGTGGTCGCTGGTG
GTTGTGGTGGTATGTGATGGAGGTGGTGGGTGTATCGATGCGGTCTGTCT
AACATGGGGTGCTGTCAGCGCGCGAAACACAGAGCGGCCATGGTCTACAT
TATATTAGTTTGAAAAATAATCAAGCATCACAGGCACACGAAAATGCCGG
GATCGTTGTTCTGGTTGCTTGATGGTTCGGGTGCCTTTCACCTAGTTCCA
GCTTGCTTTGGTTATCATTTCGCATGGTGCAGATCGCAGGCCATGCGATA
GGCAGATCGCGGCCGAAGAACCGCCTTCCTGCTTGGTGGTTCTCCTGCCT
CTTCGCGACCGTTTTTTCCACGCCGCCTTCTCCCCTTTGTCGCCGTCTCC
CGCCTCTTGGCAACGTCGTCGTCGCCGCCGCTGCCGCTGCCGCCGCCGCC
GCCATCATCCTGACGTTCCTCTTCGATGTCGCCGTCGTCGACGCTGCTCC
TCTCCCCGATGTCGGGGCGAAACAGATTCGGAGGAGAGCCTTCAAGGAGC
TCCTCGCACACCTGATACCCCTCATGCTGGACTGCCTCAAGAGCCCGGAG
GGCACCGGCAACTCCAACGGCAGCGTCTTTCCGGACGGAAGCGCCTCCTC
CATCGAGAACGCCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10629:1328..3092-

>mRNA_H-canaliculatus_F_contig10629.612.1 ID=mRNA_H-canaliculatus_F_contig10629.612.1|Name=mRNA_H-canaliculatus_F_contig10629.612.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=816bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10629:1328..3092- (Hapterophycus canaliculatus Oshoro5f female)
GGCAGGAGGAGGCGGTGGCGGCAGGGAGGGGGGGGATGGGGTGAGGGTAA
ACCCTTGGAGACAGATGAAGCTGCACGAGCTCATGGCGAAGCTGGAAGAC
AGCTCGGGCAGGAGGAGGCGGTGGCGGCAGGGAGGGGGGGGATGGGGTGA
GGGTAAACCCTTGGAGACAGATGAAGCTGCACGAGCTCATGGCGAAGCTG
GAAGACAGCTCGGCGGAGGATACGGAGACGAACTTCGCAAATATCGGCGA
GGCTATCCTGTTGCATTTGAAGCCGTCAGAGCCGCCGACTACGCGAGCCC
TCGCGCTGGACGTGGCCCAGACGTTCGTGCAGAACGTGCTCAGCGAGCGT
TCGAAGGACAAACGCTCTTCCAAGGCGGAGGATACGGAGACGAACTTCGC
AAATATCGGCGAGGCTATCCTGTTGCATTTGAAGCCGTCAGAGCCGCCGA
CTACGCGAGCCCTCGCGCTGGACGTGGCCCAGACGTTCGTGCAGAACGTG
CTCAGCGAGCGTTCGAAGGACAAACGCTCTTCCAAGATTCGGAGGAGAGC
CTTCAAGGAGCTCCTCGCACACCTGATACCCCTCATGCTGGACTGCCTCA
AGAGCCCGGAGGGCACCGGCAACTCCAACGGCAGCGTCTTTCCGGACGGA
AGCGCCTCCTCCATCGAGAACGCCCTATTCGGAGGAGAGCCTTCAAGGAG
CTCCTCGCACACCTGATACCCCTCATGCTGGACTGCCTCAAGAGCCCGGA
GGGCACCGGCAACTCCAACGGCAGCGTCTTTCCGGACGGAAGCGCCTCCT
CCATCGAGAACGCCCT
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