mRNA_H-canaliculatus_F_contig10626.609.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10626.609.1
Unique NamemRNA_H-canaliculatus_F_contig10626.609.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: D7G7N1_ECTSI (RNA polymerase sigma factor, cyanobacterial RpoD-like family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N1_ECTSI)

HSP 1 Score: 443 bits (1140), Expect = 4.610e-149
Identity = 227/278 (81.65%), Postives = 252/278 (90.65%), Query Frame = 1
Query:    1 VQAQEKEEKKTGRRPPIREVARRSAGLSEAELVVVMQDGMEARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTTIEQGVKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEISRAPKIPFNTILSQER 834
            ++AQEK EK +GRRP +R+VAR SAGLSE     VMQ GMEARQKLVVCNLALVVSL+NKYKRSHFDC CLQTLIQEGTIGLIRAAERY P KGFRFTTYAIWWIEARLRVSVQTEER IHVPMWVKNQYNTV RS+PKLR+SLGREPTS+ELAAQVEIDT+S+VVV+ KRVE+L+TWVSFHRKHESLDVPL++STP+P D +TIE GVKA +PSTESTSELEIQRDFLE CL  DLS+IQR ILRMKVGLGG+KGKNRQEISRA K+PFN ++S+ER
Sbjct:  439 IEAQEKAEKDSGRRPRLRDVAR-SAGLSEEAFASVMQAGMEARQKLVVCNLALVVSLANKYKRSHFDCGCLQTLIQEGTIGLIRAAERYDPSKGFRFTTYAIWWIEARLRVSVQTEERFIHVPMWVKNQYNTVHRSVPKLRKSLGREPTSEELAAQVEIDTNSKVVVTPKRVEELETWVSFHRKHESLDVPLEVSTPVPADCSTIEDGVKAPDPSTESTSELEIQRDFLESCLCQDLSKIQRKILRMKVGLGGEKGKNRQEISRALKMPFNNVISEER 715          
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: A0A835Z811_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z811_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.490e-37
Identity = 98/271 (36.16%), Postives = 149/271 (54.98%), Query Frame = 1
Query:   34 GRRPPIREVARRSAGLSEAELVVVMQDGMEARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRV--EQLQTWVSF--HRKHESLDVPLQMSTPLPPDFTTIEQGVKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEISRAPKIPFNTILSQER 834
            GR P + E A  +   SEA     ++ G+ A++ +V CNL LVV+L+ K++        L  LIQEG +GL+RAAE+Y P +GFRF+TYA WW+  RL +SV++  R++ VP+ V +Q+  + R++  L   LGR PT  ELAA+  +  +    V A  +  E L   + F  HR  + L   L + TP   D      G  A   + E   E ++ R+ LER +   LS+ +R I+RM+VGL   + K   E++   ++P   IL +ER
Sbjct:   85 GREPTLAERAADAGAASEALYTARLRRGLWAKRAMVTCNLRLVVALAAKFQGQG---PPLADLIQEGAVGLVRAAEKYDPARGFRFSTYATWWVRQRLHLSVRSH-RLVRVPLRVHSQFEALRRAVRALAGELGRRPTEGELAARCGLTPARAAHVRAAMLPPESLDRELHFASHRSEQGLVTMLDV-TPAAAD-----DGTSAGTATMEQALEWDLLREDLERAMRASLSQRERDIVRMRVGLDDGRAKTATELAAVFQLPAYVILREER 345          
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: Q8S9C9_CYAPA (RNA polymerase sigma factor n=1 Tax=Cyanophora paradoxa TaxID=2762 RepID=Q8S9C9_CYAPA)

HSP 1 Score: 122 bits (306), Expect = 1.810e-28
Identity = 93/256 (36.33%), Postives = 133/256 (51.95%), Query Frame = 1
Query:   28 KTGRRPPIREVARRSAGLSEAE-LVVVMQDGMEARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSS--RVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTTIEQGVKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEI 786
            KTG  P   E AR +A LS+AE L  +++ G  AR +LV  NL  VV+++ KY +     S +Q LIQEG IGLIRA E++ P  G+RFTTYA WWI   +  S+Q   R I +P     + N + R+   L  SLGR+PT  E+A  V +D S   + V SA  V  +           SLDVP+  S        TI   +++        +E E+ R+ + R L+  LS  +  +LRM+ GL   + K   ++
Sbjct:  155 KTGVEPTDEEWAR-AAALSDAEELRHMVRVGTLARDRLVRANLRWVVAVAKKYHKQRGTMS-MQDLIQEGNIGLIRAVEKFDPRMGYRFTTYATWWIRQAITRSIQNSSREIRLPAHRHEKINRIKRATVALSRSLGRQPTEAEIAEHVGLDPSRMRKFVESAAAVATV-----------SLDVPINESDN---QSATIGDFIRSENEGPADRAERELMRESVARTLAKALSEREYMVLRMRFGLDDGEPKTLNQV 394          
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: A0A538DHD2_9ACTN (RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538DHD2_9ACTN)

HSP 1 Score: 117 bits (293), Expect = 4.710e-27
Identity = 82/243 (33.74%), Postives = 129/243 (53.09%), Query Frame = 1
Query:  124 ARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPD-------FTTIEQGVKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEISRAPKIPFNTILSQE 831
            A+Q +V  NL LVVS++ +Y+           LIQEGTIGL+RAAE++   KGF+F+TYA WWI   +  ++  + R I +P+ V  + N ++RS  KLR  LGREPT+ E+  ++++        SA+ VEQ++          S  +P+ +  P+  D       F T E       P  E ++E  ++RD L++ L   LS  ++ IL M+ GL G++ +   E+ RA  +    I   E
Sbjct:  126 AKQSMVEANLRLVVSIAKRYRNQGLP---FLDLIQEGTIGLVRAAEKFDYRKGFKFSTYATWWIRQAVARALADKSRTIRMPVHVVEKLNKIVRSERKLRGELGREPTAVEIGRELDL--------SAEEVEQIR---------RSSQLPVSLEKPVGDDEESEFGHFLTDETA-----PLPEESAEQALRRDALKQILC-SLSPREQRILEMRYGLDGEQPRTLDEVGRAFNVTRERIRQIE 342          
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: A0A538GPW4_9ACTN (RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538GPW4_9ACTN)

HSP 1 Score: 117 bits (292), Expect = 6.340e-27
Identity = 87/253 (34.39%), Postives = 130/253 (51.38%), Query Frame = 1
Query:   85 EAELVVVMQDGME-ARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTTIEQG---VKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEISRAPKIPFNTILSQE 831
            E EL   ++ G   A+Q++V  NL LVVS++ +Y+           LIQEGTIGL+RAAE++   KGF+F+TYA WWI   +  ++  + R I +P+ +  + N ++RS  KLR  LGREPTS E+   VE+        S   VEQ++          S   P+ +  P+  D    E G      SEP  E  +E+E+++  L R L   LS  +R +L ++ GL G+      E+ RA  +    I   E
Sbjct:  110 EVELAKRIERGEHRAKQEMVEANLRLVVSIAKRYRNQGLP---FLDLIQEGTIGLVRAAEKFDHRKGFKFSTYATWWIRQAVARALADKGRTIRMPVHIVEKLNKIVRSERKLRAELGREPTSMEIGRDVEL--------SPDEVEQIR---------RSSQAPVSLEKPVG-DEEESEFGHFLTDESEPLPEEAAEVELRKATLMRVLG-TLSLRERRVLELRYGLNGEHPCTLDEVGRAFNVTRERIRQIE 340          
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: A0A538F488_9ACTN (RNA polymerase sigma factor n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538F488_9ACTN)

HSP 1 Score: 116 bits (290), Expect = 1.870e-26
Identity = 85/253 (33.60%), Postives = 132/253 (52.17%), Query Frame = 1
Query:   85 EAELVVVMQDGM-EARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTTIEQG---VKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEISRAPKIPFNTILSQE 831
            E EL   ++ G  +A+Q++V  NL LVVS++ +Y+           LIQEGTIGL+RAAE++   KGF+F+TYA WWI   +  ++  + R I +P+ +  + N ++RS  KLR  LGREPT+ E+   VE+ +          VEQ++          S   P+ +  P+  D    E G      SEP  E  +E+E+++  L+R L   LS  +R +L ++ GL G+      E+ RA  +    I   E
Sbjct:  138 EVELAKRIERGEHKAKQEMVEANLRLVVSIAKRYRNQGLP---FLDLIQEGTIGLVRAAEKFDHRKGFKFSTYATWWIRQAVARALADKARTIRMPVHIVEKLNKIVRSERKLRAELGREPTAFEIGLDVELGSDE--------VEQIR---------RSSQAPVSLEKPVG-DEEESEFGHFLTDESEPLPEEAAEVEMRKATLQRVLG-TLSLRERRVLELRYGLNGEHPCTLDEVGRAFNVTRERIRQIE 368          
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: A0A7W0PH05_9ACTN (RNA polymerase sigma factor n=3 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0PH05_9ACTN)

HSP 1 Score: 115 bits (287), Expect = 2.140e-26
Identity = 82/239 (34.31%), Postives = 126/239 (52.72%), Query Frame = 1
Query:  124 ARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTTIEQGVKASEPST---ESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEISRAPKIPFNTILSQE 831
            A+Q +V  NL LVVS++ +Y+           LIQEGTIGL+RAAE++   KGF+F+TYA WWI   +  ++  + R I +P+ V  + N ++RS  KLR   GREPT +E+A  VE+  +         VEQ++          S   P+ +  P+  D  + E G   ++ ST   E  +E  +QR+ L R +   LS  +R +L ++ GL GQ+ +   E+ RA  +    I   E
Sbjct:   98 AKQAMVEANLRLVVSIAKRYRNQGLP---FLDLIQEGTIGLVRAAEKFDHRKGFKFSTYATWWIRQAVARAIADKGRTIRMPVHVVEKLNRILRSERKLRSERGREPTMEEVARDVEMTPAE--------VEQIR---------RSAQTPVSLEKPVGDDDES-EFGHFLADDSTPLPEELAETALQREAL-RTILGALSERERRVLELRYGLDGQQPRTLDEVGRAFNVTRERIRQIE 314          
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: K9XMI4_STAC7 (RNA polymerase, sigma 70 subunit, RpoD subfamily n=3 Tax=Pleurocapsales TaxID=52604 RepID=K9XMI4_STAC7)

HSP 1 Score: 114 bits (286), Expect = 2.630e-26
Identity = 88/274 (32.12%), Postives = 151/274 (55.11%), Query Frame = 1
Query:   13 EKEEKKTGRRPPIREVARRSAGLSEAELVVVMQDGMEARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTTIEQGVKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGLGGQKGKNRQEISRAPKIPFNTILSQER 834
            EK E K G+   ++E A +   LSEAEL   ++ G  A++K++  NL LVV+++ KY++ + +      LIQEG++GL R  E+Y P KG++F+TYA WWI   +  ++  + R I +P+ +  + N + ++  +L + LGR  T  E+A ++E+DT+           Q++ +++  R+  SLDV +  +          ++G     P   +T EL +++D L   L  DL+  QR ++ ++ GL  + GK   E+S A KI     LS+ER
Sbjct:   56 EKLEHKLGKELSLKEWANQ-VNLSEAELDRAIKQGQRAKRKMIEANLRLVVAIAKKYQKRNME---FLDLIQEGSLGLERGVEKYDPTKGYKFSTYAYWWIRQAITRAIAQQARTIRLPIHITEKLNKIKKTQRELSQKLGRSATPAEIAQELELDTA-----------QIREYLNVARQPISLDVRVGDNQDTELSELLEDEGTS---PDNYATQEL-LRQDLLH--LMADLTPQQREVIALRFGL--EDGK---ELSLA-KIGQRMNLSRER 302          
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: A0A7S2XSD2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XSD2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 3.130e-26
Identity = 78/234 (33.33%), Postives = 121/234 (51.71%), Query Frame = 1
Query:   82 SEAELVVVMQDGMEARQKLVVCNLALVVSLSNKY----KRSHFD------CSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSSRVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTTIEQGVKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVGL 753
            S  EL  VM DG EAR KLV CN  LV  ++ ++    KRS+ D         +Q LIQEG +GL+ AAER+ P KGFRF+TYA WW+  R+  S+    R+I +P+ V      + ++  ++ + +GR+P+  ELA  V I            +++LQ +    R   SL+VP+   T       T+   + +  P+ E  +EL+  R  + R +  +L   +R +L  + GL
Sbjct:   35 SVMELRQVMHDGREARSKLVACNAGLVTQIAKRHYWTLKRSNQDGRGVGTILTMQDLIQEGNLGLMEAAERFDPSKGFRFSTYATWWVRQRVLRSIADYSRVIRLPVHVHTMLKNISKARKEMTKQIGRDPSMPELAHHVGIS-----------IDKLQLYTDSSRSVLSLEVPIA-GTDKVDQKRTLGDKIASKNPTPEEDAELDSLRTDI-RAVVDELGDRERDVLVTRFGL 255          
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Match: UPI0016891690 (RNA polymerase sigma factor, RpoD/SigA family n=1 Tax=Oscillatoria sp. FACHB-1407 TaxID=2692847 RepID=UPI0016891690)

HSP 1 Score: 114 bits (284), Expect = 4.330e-26
Identity = 72/194 (37.11%), Postives = 109/194 (56.19%), Query Frame = 1
Query:   34 GRRPPIREVARRSAGLSEAELVVVMQDGMEARQKLVVCNLALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTYAIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTSKELAAQVEIDTSS-RVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPPDFTT 612
            GR P ++E A R A LS AEL  V+ +G  A++K+V  NL LVVS++ KY + + D   L  LIQEGTIG+ R  E++ P KG+RF+TYA WWI   +  ++  + R I +P+ +  + N + ++  +L + LGR  T+ ELA ++E+ T   R  +   RV           +   L   L+ + P P DF T
Sbjct:   54 GREPELQEWAER-ANLSVAELQQVIDEGEFAKRKMVEANLRLVVSVAKKYIKRNVD---LLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKGRTIRLPIHITEKLNKIKKAQRQLAQKLGRAATASELAEELELTTKQVREYLERARVPLSLDLKVGDNQDTELGELLEDTNPSPEDFAT 243          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10626.609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7N1_ECTSI4.610e-14981.65RNA polymerase sigma factor, cyanobacterial RpoD-l... [more]
A0A835Z811_9STRA1.490e-3736.16RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
Q8S9C9_CYAPA1.810e-2836.33RNA polymerase sigma factor n=1 Tax=Cyanophora par... [more]
A0A538DHD2_9ACTN4.710e-2733.74RNA polymerase sigma factor n=1 Tax=Actinomycetia ... [more]
A0A538GPW4_9ACTN6.340e-2734.39RNA polymerase sigma factor n=1 Tax=Actinomycetia ... [more]
A0A538F488_9ACTN1.870e-2633.60RNA polymerase sigma factor n=1 Tax=Actinomycetia ... [more]
A0A7W0PH05_9ACTN2.140e-2634.31RNA polymerase sigma factor n=3 Tax=Actinomycetia ... [more]
K9XMI4_STAC72.630e-2632.12RNA polymerase, sigma 70 subunit, RpoD subfamily n... [more]
A0A7S2XSD2_9STRA3.130e-2633.33Hypothetical protein n=1 Tax=Attheya septentrional... [more]
UPI00168916904.330e-2637.11RNA polymerase sigma factor, RpoD/SigA family n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10626contigH-canaliculatus_F_contig10626:2..4300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score447.6
Seed ortholog evalue4.3e-123
Seed eggNOG ortholog2880.D7G7N1
KEGG koko:K03086
EggNOG free text desc.sigma factor activity
EggNOG OGs2QVXR@2759,COG0568@1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionWinged helix-turn-helix DNA-binding domain
Ec32 orthologEc-22_001740.1
Exons7
Model size834
Cds size834
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928718.9929733-CDS-H-canaliculatus_F_contig10626:1..431622928718.9929733-CDS-H-canaliculatus_F_contig10626:1..43Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10626 2..43 -
1696845537.979099-CDS-H-canaliculatus_F_contig10626:1..431696845537.979099-CDS-H-canaliculatus_F_contig10626:1..43Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10626 2..43 -
1622928719.0450644-CDS-H-canaliculatus_F_contig10626:998..10971622928719.0450644-CDS-H-canaliculatus_F_contig10626:998..1097Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10626 999..1097 -
1696845537.9930086-CDS-H-canaliculatus_F_contig10626:998..10971696845537.9930086-CDS-H-canaliculatus_F_contig10626:998..1097Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10626 999..1097 -
1622928719.0738702-CDS-H-canaliculatus_F_contig10626:1468..15401622928719.0738702-CDS-H-canaliculatus_F_contig10626:1468..1540Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10626 1469..1540 -
1696845538.001698-CDS-H-canaliculatus_F_contig10626:1468..15401696845538.001698-CDS-H-canaliculatus_F_contig10626:1468..1540Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10626 1469..1540 -
1622928719.091012-CDS-H-canaliculatus_F_contig10626:1862..19911622928719.091012-CDS-H-canaliculatus_F_contig10626:1862..1991Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10626 1863..1991 -
1696845538.009474-CDS-H-canaliculatus_F_contig10626:1862..19911696845538.009474-CDS-H-canaliculatus_F_contig10626:1862..1991Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10626 1863..1991 -
1622928719.1113787-CDS-H-canaliculatus_F_contig10626:2922..30691622928719.1113787-CDS-H-canaliculatus_F_contig10626:2922..3069Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10626 2923..3069 -
1696845538.0181777-CDS-H-canaliculatus_F_contig10626:2922..30691696845538.0181777-CDS-H-canaliculatus_F_contig10626:2922..3069Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10626 2923..3069 -
1622928719.1220717-CDS-H-canaliculatus_F_contig10626:3519..36481622928719.1220717-CDS-H-canaliculatus_F_contig10626:3519..3648Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10626 3520..3648 -
1696845538.0275712-CDS-H-canaliculatus_F_contig10626:3519..36481696845538.0275712-CDS-H-canaliculatus_F_contig10626:3519..3648Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10626 3520..3648 -
1622928719.1336563-CDS-H-canaliculatus_F_contig10626:4084..43001622928719.1336563-CDS-H-canaliculatus_F_contig10626:4084..4300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10626 4085..4300 -
1696845538.037685-CDS-H-canaliculatus_F_contig10626:4084..43001696845538.037685-CDS-H-canaliculatus_F_contig10626:4084..4300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10626 4085..4300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10626.609.1prot_H-canaliculatus_F_contig10626.609.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10626 2..4300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10626.609.1

>prot_H-canaliculatus_F_contig10626.609.1 ID=prot_H-canaliculatus_F_contig10626.609.1|Name=mRNA_H-canaliculatus_F_contig10626.609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=278bp
VQAQEKEEKKTGRRPPIREVARRSAGLSEAELVVVMQDGMEARQKLVVCN
LALVVSLSNKYKRSHFDCSCLQTLIQEGTIGLIRAAERYKPDKGFRFTTY
AIWWIEARLRVSVQTEERMIHVPMWVKNQYNTVIRSIPKLRESLGREPTS
KELAAQVEIDTSSRVVVSAKRVEQLQTWVSFHRKHESLDVPLQMSTPLPP
DFTTIEQGVKASEPSTESTSELEIQRDFLERCLSHDLSRIQRTILRMKVG
LGGQKGKNRQEISRAPKIPFNTILSQER
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mRNA from alignment at H-canaliculatus_F_contig10626:2..4300-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10626.609.1 ID=mRNA_H-canaliculatus_F_contig10626.609.1|Name=mRNA_H-canaliculatus_F_contig10626.609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=4299bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10626:2..4300- (Hapterophycus canaliculatus Oshoro5f female)
GTCCAGGCCCAGGAGAAAGAGGAGAAAAAGACAGGCCGAAGGCCACCGAT CCGGGAGGTGGCCAGGCGGTCGGCGGGACTCTCAGAGGCGGAGCTCGTCG TCGTGATGCAGGACGGGATGGAAGCGAGGCAGAAGCTGGTGGTGTGCAAC CTTGCCCTCGTGGTTTCGCTGTCGAACAAGTACAAGCGGAGCCACTTCGA CTGCAGCTGCCTGCAGGTTCGTGTGTGGAGGCCGGTGTTGCTTCAACCGC TCCGCACTTGTGTGGTAAAATCCTCTCCCGGAGATCTCTCGGTCGTTCGT GGCTTGATCGTAGATCGCGGTTCGACTGTGGCTGCCAGGAGCTTCGTTTG CTTCGTGTGATCGGCTGCTTTTTCGTGGACATTCTGCTTTATGTGACAGC ATCGATAGCGCTCCCCGAGCGTCCAATGAATATACACGCACCAGCCTATC ATGATGAATCGTACGGCAACGCACACGCTTTTTTCTACCGCTCGCTCTCA GAGTACACTGGGCAAAAAGGTCCTGCTACTGGATGGAGCAGATATACGCA GGAGGGTTCAATTTCGGGAACGTTGATTTCCCTTGATTTTGCACTTTTTT TTGCCCTTGTCTTTCGTCTGTATATTTTTCGCTTTCGTCCGTTTTTTCCC AGACCCTGATCCAGGAGGGAACGATCGGGCTCATCCGAGCGGCGGAGAGG TACAAGCCCGACAAAGGGTTCAGGTTCACTACGTACGCCATCTGGTGGAT CGAAGCGAGGCTGCGGGTGTCGGTGCAGACGGTGCGTTGTCGTTGTCGTT GTCGTTGCTCTTGCCCCTGTGCTTGGTGCGGTCTTCGTCGTTGTTCTCGT TCCAGTCGTCTCCTGCAGCGGTGGTCAGGTGACTCTTGACGGCATGTTTG GATGATTGGTGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTG CTGGTCTCGTGTTTTTGTGCTTTTGGTGACCCCTTCGCCCCCGCGTCCTT GACACGAAGGACAGCAATAGCGTGAAGGCCCGCAAGTGTCGGAGTGGTCT CTCGCCCATGAACGTTTCTCGAACGGGCGACAGGTACGGCCATACAGTCG TCGAGTGTTCGGAATCAGGCGACGCAAGAGCGCCCGCCTCTCCTCTCGTC TTCTCCTCCTGAAGTGAGGCATCACAACGCCGTAGATGGCACGCCCACCC CAGCTCCCCCTCCCCCGTTCCCCTCTCCCAGGAAGAGCGCATGATCCACG TCCCCATGTGGGTCAAGAACCAGTATAACACCGTGATTAGGTCGATCCCA AAGCTGAGAGAGTCCTTGGGAAGGGAACCCACCTCGAAGGAGCTTGCAGC GCAAGTTGAGATCGACACTAGCTCCAGGGTGAGTTCTTTCGACGATAGTG GTCGACAAGTAGCAGGCAGGGGGGCGGGAGAGAGGGCAGGTTCAGAGCGG GAGAGGAGAAGGCGGGTTGATGGAAGGGTGAGAACGGAGGTAGGGACGCA GGGGACGTCATTCCGATTGTCCCCGGGTCTGAACGCATCGCGGGCGACAT GGTGCGAAACTGGCTCGAAGAAGATGAGAGAAGTGCGGGTGCATGGAAAA GAAGGCGGCAGGGGACGAAACTACTTGTTACACTTGAGCGTTTGTAAGAA GAGAAGAAGGTAGCGGGGGATGCTTCCTGACTTGAGTAAGGAGCCGTGTG AGGAGGAATATTTTGACGTCCAATATCACCCGTGAAGCGCCGCTGGAGTG TACCTCATGGTGCCTTGTACAGCGCTGTTGTGCCTGCCGCTTTAAGAGCA AACGCGCACACTACTAAGATCCGAGGTATGCAACGCTTGGGTAAGGTCGG CCGATCTACGCCTGGTGTGGATGGAATTCTCCGCGACGACGATGGTCCCA CGACGCCAGCGCTCCAGCTGATGGTTGTAATGGTTCTGGTGATCAGTTGG AGAGAAGATGATCTTTCGTCCAGGCGGTGTCGGCGGGATGCGGTTCGGAA AGACGAGAGAAGAGTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGT TGTTGTTGTTGGTTATTGTTGTTGTTTGTTGTTTGTTGTTACCGCAAGTG CTGCGATTGCGGCTGCGGTAAGGGCAAAACTGCCAACACTCCCACACACA GCAACGGGCCGATAGGCCAAGCCGAACAGCACCTGCTGCTGGTGAGCGGC ATCGCGTGAGATCAAGACAGCACCATTGAAGCACTTGCTCTCGCTGCTGT TTCTATCCGCGTTTTATTTCACCTCGAATCCTACGTCCGTACCATTACCT GCCGATCAGGTGGTGGTGTCTGCCAAGCGAGTAGAGCAGCTGCAGACTTG GGTGTCCTTCCACCGGAAGCATGAGTCTCTGGATGTGCCCCTGCAAATGT CGACACCGCTGCCGCCAGATTTCACCACGATCGAGCAGGTTCGTGTTTCT TCTTGTCTCTGTTTGGGTTGTTGTGGATAATGTCCCTGCCGTCGTTGGTG GTGCCCTCTGTACTATTCGTGCTTTTGTTGTCTTACTGATGCCTTTTGGC GTCTGTAGCTTGCCGTCGTGCTGCGTCTTTCCAAAGTGGGAATCCTCGGA TCCGGCGAAGGCCTCTCGTGCGCCCGCAGGGCGCAGGAGACGCCAAGGAC GTTCGACCGTAGAAGTTGCTGACGATGAGAAATTGACACATTTCCACACG TCTCTCCCCCAACGAACTCTCTGCCGTTCCCGCCATCGCCCGTTACTCTT CCTGGCGCAGGGAGTTAAGGCATCCGAGCCGTCCACGGAATCGACGTCCG AACTAGAAATTCAGCGAGATTTCCTCGAGAGGGTGAGTCTGTCAGCCTGT ACGTACCCCAATCGCCCATGCATTTTTTCCCTGCGGTGCCCCTGCCTCCC TGTGGTGCAGGTTTCTTCGCTTGATGCCGTCGTGTTTTTTTTACCCCGCG CGTATGTATGATAGCTGTTTTGTCAGAAGAAAGGAGAAGAGAAAAGGAGT ACCAAGTATTTTTTTTCTTTTTTTAAGGAAAAGAGGGTATCCCCTCGCGT CACACAGTAGATATGACAGGTATGAAAGTGGGAAAGGCTATAATAACAGA CAGATGCGACCAAGATATTCCGGCCTTGGTGTTCGCGCGATGACTGCTCC CCGTTGGTAAGACAACCCAACAGCCCGCCCGTTCTTGTGTGTGGATCTAC CAGTGCCTGTCCCATGACCTCAGTAGGATTCAGCGCACGATTCTTCGGAT GAAAGTGGGGCTCGGCGGACAGAAGGGCAAGAACCGGCAGGAGATCAGTA GGGTGAGATGCGCATTGTTTGTTGGTTTCTGATTCTGCGGTGCCCCTTGA CCGCTTGCACAAGAGGGCATACGGATGACAATCAAAGACGCTCAGCATCC CCCCTCTTCCCCCTCTTTTCTCCGACCTTATGGACGTTTAATATATAGGA ATTCGTGTAACGATGGGTTTCTGCAGATTTCATAAAGGAAGCGTTCTTGT CCGCAGACCCAGAAAGGGATGGACTTCGAACATCCCCGCTTTCAAGTATT CATGAACTAGTGTGCCGACGCCCCCCCCCCCTTCGATCTCGACCTTACGG GAGCTTGGGGGTGAGCGTCCACTTTTGTGATCCACGTACCCTCTTAGTCT CTCTCCATACACATGCGTGACGCGTCTGTGGTACCCACGCTTCCTATAGA GGTGGGGGAAAGCAGGTTGTTACGTCGGCAGACTTTCATCCAAGGGTATG GAACTGAAAAAAAATAGCGGCCAGTACAAGTATCAGAGAAAGGTGCCGTG GGTCACCCTTCGTTCATACCACGCAGCCTCTCGTAGATATAGATAGCCCT TGGTGAAAACACTCGGAATCATTTCCGGGTGACTCGACACGAAATCGTTC CTGAACTCGCAGCACCACGCGAAGCTGTGCACTCGGCTCGCCCGAACACG CCACCACGCTCGGCCACAAAATGTGTGGTACTGCGGTTCGTGCCCTGCTA GGACAACACGCATGCACAAGCACGCCGCGCAGCACCAACGTCTTCGCACC CCGAGACCATTCGCAGCGTTGGAACCGCGTTGCCTGCCGGCCCCCCGGCG TTGCTGGCTCCCCGCCTGCACGCGTTTCTGCACGCAACGTTCCTACATAT GGATATTCCCGGCACCCTTACTATTTTTGTGCGGAGTGCCAACCCCCCCC CCCCCCCGCGCCCCCGCGCTTTCCCAACCCCTTTTCGGCCCGCCGGCCCC AGAACAGGCGCCGAAGATCCCCTTCAACACCATCCTCAGCCAAGAGCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10626:2..4300-

>mRNA_H-canaliculatus_F_contig10626.609.1 ID=mRNA_H-canaliculatus_F_contig10626.609.1|Name=mRNA_H-canaliculatus_F_contig10626.609.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1668bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10626:2..4300- (Hapterophycus canaliculatus Oshoro5f female)
GTCCAGGCCCAGGAGAAAGAGGAGAAAAAGACAGGCCGAAGGCCACCGAT
CCGGGAGGTGGCCAGGCGGTCGGCGGGACTCTCAGAGGCGGAGCTCGTCG
TCGTGATGCAGGACGGGATGGAAGCGAGGCAGAAGCTGGTGGTGTGCAAC
CTTGCCCTCGTGGTTTCGCTGTCGAACAAGTACAAGCGGAGCCACTTCGA
CTGCAGCTGCCTGCAGGTCCAGGCCCAGGAGAAAGAGGAGAAAAAGACAG
GCCGAAGGCCACCGATCCGGGAGGTGGCCAGGCGGTCGGCGGGACTCTCA
GAGGCGGAGCTCGTCGTCGTGATGCAGGACGGGATGGAAGCGAGGCAGAA
GCTGGTGGTGTGCAACCTTGCCCTCGTGGTTTCGCTGTCGAACAAGTACA
AGCGGAGCCACTTCGACTGCAGCTGCCTGCAGACCCTGATCCAGGAGGGA
ACGATCGGGCTCATCCGAGCGGCGGAGAGGTACAAGCCCGACAAAGGGTT
CAGGTTCACTACGTACGCCATCTGGTGGATCGAAGCGAGGCTGCGGGTGT
CGGTGCAGACGACCCTGATCCAGGAGGGAACGATCGGGCTCATCCGAGCG
GCGGAGAGGTACAAGCCCGACAAAGGGTTCAGGTTCACTACGTACGCCAT
CTGGTGGATCGAAGCGAGGCTGCGGGTGTCGGTGCAGACGGAAGAGCGCA
TGATCCACGTCCCCATGTGGGTCAAGAACCAGTATAACACCGTGATTAGG
TCGATCCCAAAGCTGAGAGAGTCCTTGGGAAGGGAACCCACCTCGAAGGA
GCTTGCAGCGCAAGTTGAGATCGACACTAGCTCCAGGGAAGAGCGCATGA
TCCACGTCCCCATGTGGGTCAAGAACCAGTATAACACCGTGATTAGGTCG
ATCCCAAAGCTGAGAGAGTCCTTGGGAAGGGAACCCACCTCGAAGGAGCT
TGCAGCGCAAGTTGAGATCGACACTAGCTCCAGGGTGGTGGTGTCTGCCA
AGCGAGTAGAGCAGCTGCAGACTTGGGTGTCCTTCCACCGGAAGCATGAG
TCTCTGGATGTGCCCCTGCAAATGTCGACACCGCTGCCGCCAGATTTCAC
CACGATCGAGCAGGTGGTGGTGTCTGCCAAGCGAGTAGAGCAGCTGCAGA
CTTGGGTGTCCTTCCACCGGAAGCATGAGTCTCTGGATGTGCCCCTGCAA
ATGTCGACACCGCTGCCGCCAGATTTCACCACGATCGAGCAGGGAGTTAA
GGCATCCGAGCCGTCCACGGAATCGACGTCCGAACTAGAAATTCAGCGAG
ATTTCCTCGAGAGGGGAGTTAAGGCATCCGAGCCGTCCACGGAATCGACG
TCCGAACTAGAAATTCAGCGAGATTTCCTCGAGAGGTGCCTGTCCCATGA
CCTCAGTAGGATTCAGCGCACGATTCTTCGGATGAAAGTGGGGCTCGGCG
GACAGAAGGGCAAGAACCGGCAGGAGATCAGTAGGTGCCTGTCCCATGAC
CTCAGTAGGATTCAGCGCACGATTCTTCGGATGAAAGTGGGGCTCGGCGG
ACAGAAGGGCAAGAACCGGCAGGAGATCAGTAGGGCGCCGAAGATCCCCT
TCAACACCATCCTCAGCCAAGAGCGGGCGCCGAAGATCCCCTTCAACACC
ATCCTCAGCCAAGAGCGG
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