mRNA_H-canaliculatus_F_contig10622.606.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10622.606.1
Unique NamemRNA_H-canaliculatus_F_contig10622.606.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10622.606.1 vs. uniprot
Match: A0A6H5J936_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J936_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 9.580e-8
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:  196 GMASASGE------RRASCDFCSRRKRKCDGVNPCQNCRKLKLVCHFSVKQKSG 339
            G   ASGE      RR++CD CS +K KCDG+ PCQ CRK  + CHFSVK+ +G
Sbjct:   73 GATGASGEDGEGTRRRSACDSCSLKKIKCDGLKPCQACRKRGVTCHFSVKRPTG 126
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BLAST of mRNA_H-canaliculatus_F_contig10622.606.1 vs. uniprot
Match: D7FM09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM09_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 6.110e-7
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:  295 KLKLVCHFSVKQKSGRKRKPREGENPPLEAPTPPP 399
            KLKLVCHFSVKQKSGRKRKPREGE P L+ P+ PP
Sbjct:    2 KLKLVCHFSVKQKSGRKRKPREGEAPTLDTPSRPP 36
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BLAST of mRNA_H-canaliculatus_F_contig10622.606.1 vs. uniprot
Match: A0A6H5JV62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV62_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 3.930e-6
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:  298 LKLVCHFSVKQKSGRKRKPREGENPPLEAPTPPP 399
            LKLVCHFSVKQKSGRKRKPREGE P L  P+ PP
Sbjct:    2 LKLVCHFSVKQKSGRKRKPREGEAPTLHTPSRPP 35
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BLAST of mRNA_H-canaliculatus_F_contig10622.606.1 vs. uniprot
Match: A0A177VSR3_9BASI (Zn(2)-C6 fungal-type domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VSR3_9BASI)

HSP 1 Score: 54.3 bits (129), Expect = 7.300e-6
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:  220 RRASCDFCSRRKRKCDGVNPCQNCRKLKLVCHFSVKQKSGRKRK 351
            RRASC+FC RRK +CDG +PC  C + K+VC F V+   GR R+
Sbjct:   31 RRASCEFCRRRKIRCDGQDPCAACTQRKIVCVFKVESPKGRPRR 74
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BLAST of mRNA_H-canaliculatus_F_contig10622.606.1 vs. uniprot
Match: D8LM00_ECTSI (Zn(2)-C6 fungal-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM00_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 1.780e-5
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:  223 RASCDFCSRRKRKCDGVNPCQNCRKLKLVCHFSVKQKSG 339
            R++CD C R KRKCDG+ PC  CR+    C +S KQKSG
Sbjct:  208 RSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSG 246
[Close]
BLAST of mRNA_H-canaliculatus_F_contig10622.606.1 vs. uniprot
Match: A0A6H5JM19_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM19_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.830e-5
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:  223 RASCDFCSRRKRKCDGVNPCQNCRKLKLVCHFSVKQKSG 339
            R++CD C R KRKCDG+ PC  CR+    C +S KQKSG
Sbjct:  184 RSACDACHRMKRKCDGLQPCNRCRRRSRPCGYSYKQKSG 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10622.606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5J936_9PHAE9.580e-853.70Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FM09_ECTSI6.110e-782.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JV62_9PHAE3.930e-682.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A177VSR3_9BASI7.300e-654.55Zn(2)-C6 fungal-type domain-containing protein n=2... [more]
D8LM00_ECTSI1.780e-556.41Zn(2)-C6 fungal-type domain-containing protein (Fr... [more]
A0A6H5JM19_9PHAE1.830e-556.41Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10622contigH-canaliculatus_F_contig10622:1513..4508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size401
Cds size399
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928718.543156-CDS-H-canaliculatus_F_contig10622:1512..18091622928718.543156-CDS-H-canaliculatus_F_contig10622:1512..1809Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10622 1513..1809 +
1696845537.906572-CDS-H-canaliculatus_F_contig10622:1512..18091696845537.906572-CDS-H-canaliculatus_F_contig10622:1512..1809Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10622 1513..1809 +
1622928718.5576503-CDS-H-canaliculatus_F_contig10622:4406..45081622928718.5576503-CDS-H-canaliculatus_F_contig10622:4406..4508Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10622 4407..4508 +
1696845537.9154406-CDS-H-canaliculatus_F_contig10622:4406..45081696845537.9154406-CDS-H-canaliculatus_F_contig10622:4406..4508Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10622 4407..4508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10622.606.1prot_H-canaliculatus_F_contig10622.606.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10622 1513..4508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10622.606.1

>prot_H-canaliculatus_F_contig10622.606.1 ID=prot_H-canaliculatus_F_contig10622.606.1|Name=mRNA_H-canaliculatus_F_contig10622.606.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=133bp
MGNSDEDDASSHPLSAPRGTYRRQGPDFGPGPEGSRGSGGGVGGAGVGER
PGGQKQEPGGGGAGRGMASASGERRASCDFCSRRKRKCDGVNPCQNCRKL
KLVCHFSVKQKSGRKRKPREGENPPLEAPTPPP
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mRNA from alignment at H-canaliculatus_F_contig10622:1513..4508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10622.606.1 ID=mRNA_H-canaliculatus_F_contig10622.606.1|Name=mRNA_H-canaliculatus_F_contig10622.606.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2996bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10622:1513..4508+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCAACAGCGACGAAGATGACGCCTCCAGCCACCCGTTGAGCGCACC
ACGCGGGACATACCGTCGCCAAGGCCCAGACTTCGGGCCCGGGCCCGAGG
GAAGCAGAGGAAGCGGGGGAGGAGTAGGAGGAGCAGGAGTAGGCGAACGC
CCAGGGGGACAGAAGCAGGAGCCTGGCGGAGGCGGAGCAGGTCGGGGCAT
GGCGTCCGCATCGGGCGAGAGACGCGCCAGCTGCGACTTCTGCTCCCGGA
GGAAGAGGAAGTGCGACGGAGTCAACCCCTGCCAAAACTGCAGGAAGGTG
AAAAAAAAAACGCTCGCCCGTGGGTGGTGTGGTTCTGGGGTGTGCGCCCG
CAGGGGTTGTGTAGGTGTGTGTGTGTGTGAGTGGGCGTTTTGTCTTTCTT
TCCATGAAAGACTCAGGGAGCTTGCCTCCCGACCGGGAGAGAGGGACGCA
AGGCACTTGAAGAAGCACCTGGCCCCTGGGTTGCAGGGGAGGAGGCTCCA
GGGCAGAGGCTGCTGATCCATCGGTGGAAGGATCGGAAGCACCTGAGGCG
GGGACGTGGTGCGGTGGGGCTGCCGGGCTTTCTCCCCCGCCGCGTGTCTC
TCGTACGCACAGCGACGCATGTCCGGGGGGGCGAGCAAGTCTCTCAAATG
TCGACAGACGCACGCCAATTTTTTTGGTGGCCGGCTTCTGAGCGAGGGAA
CCAGAAAACAAATCTACAAGGAGGTGTTCAGTTTTGGGCGACCCCTATTC
GAGCACGGAGGTCAAGCGGGCAAGTCGATTCGCGCGTGCGCTCCACGAAC
GCGACACCAACACCACAGGAAGCCGTCGCGTCTCCTCCGTGTCCACACGC
CCGTGCCTCCGCCCCCCCCCCGTCTCCGGCGTGCCCGCGCACGTCCGCTG
GAAGCTACAGCAGCAGCACCTCATAGGCGAACAAGGCCGCTGATCTTTGA
TCTGCGACGAGCCCACAATCTACGAATATTCGCTTGTGTGTCACCTCCTT
TGCACGTACTTCCTTGTAGGAGCCTCTTTTTGGGCGTTCAGAGACCCGCG
TCGATCCGGGAGGTGCCCGAGGGAACCCGCCCCTTCTGACGGTTACGAAC
ACTTCCGCCCAACTGCTTCTTGTTGCTCGTCTCGATTGTCCACGCATCTT
CGGTTTTCGTTTTCCAAGAAACGGGGCAGCCTTCACACACACAGCTCTCT
CTACCTTGCTTTCGTACCGAAATCGAACTCATTTTTCAACCGCATGTGTT
TCATCCGCTCCTCTTTCTATGATGCCTGCATCTGGCTGTCTCTGCTTCTA
TCATACAGCCTGTCATCCTACTAGTCTACCGCTCTTACTACTTTTGTCCT
GCCACCGCCTCTACCACTTTGTCCACTGCTGTTGAGTTCTTTGTTTCCTG
GAATTGCTGGACCATCAAGATCTTTGTGAAACAAGAGCTGGCTTGCTTGC
GTCGGCCGACTACCGCATCCCACTGCCTCGCACCCCAGAGCGCAGAGGCC
GACGTTGGCCACTACTTCGAAGTGCTTCGTAGTATCAACATTAAAATCCT
CCAAGGCGGACGGCAATGTTCGCTAGAAGCTAGAAGGCGCTATTTGTTAT
TTGTTATTTGCTTCTTGCCCCAGGAAAAAGCGAGCGGATAGATGCACGAG
GCTGTTCGCCCCACGAGGCGCTTCCTGTCACGGACAAACGCCCCACAATT
TGCTCCGGTGATCCGAAGTGGTGGTTGCGGTGTATCCTCTTCCGAAGCAA
AAGTATGTGCAGCAGCAGCAGCAGCAGCAGCAGTGAGCCGTCGCGTCCTT
CGCCAGCGTGGAGGAGGCCGTGAACAGACTGGGCGGACGTACGGGCGAAG
AAGGGCGCCCGGCTTTAGCACGGGTCGGAGGTGCCCCCCCACCCCCCACC
TCCCGAAGTTCTGTGGGTACAGTAGCGTGGTCGCACATCCACCTCGATAG
CTTGTGCTCTAACTTGCAGGCAGAATACAACCATCTCATCATGGGAAGCA
CCTTCAGATATCCGGCGTGTGGCCCACGCAGCAGTCGAGGATACCGAGTG
CGGCACAGGCTCCGGCATCTTTTGACAGTAGGCGCAAGAACATGTTTTCT
CGTCTAGAGTACTGTAGCCACACCTCTGTTGCTGCTTTTCTCTCACAGCC
AGCAAGCATTATTGAACATCTCCACGAAAAAGTTCGAGGTAAACACGCCT
CTGTTGCTGTTTTCCCCACACAGCCCACGTGATTGAACATCTCCCCGAAG
AAGTTCGAAGCACCCCCCGCGGCGGTTGTGTATCAGGGAATGAGTCTCTT
GGTGAAATTCCATCGTCCAGGTAGAATTTCTCTAGCGAAGTTTTGCTTTT
CAAAGATGAAAACTTGGGCCTCCGCTGCAGCGGTCGAGGACTGTCTGCAT
TCTCAGGTCCCGCGGCGGTGTCGGTCGGTTACTGACCGCTGCGTCGACCC
TCCCCAGAGGCCCCGGGACCTCAGTCAGAAGTCGACACACACCTGACGCC
TTTCCACAGCACTGAACCCTCGTTGGTTTAGGGAATCGATCGACTCCCCC
TCATTGAAGTTGGCGGGGGCGAGAGTCCTCCCTGAGGCAGCCCTGCACCG
TACTTGCTGCGCTGTTGGTGCCTCTGTGCCACTCGACTCCGCTTTAACCT
TGCCGAAAGGGGCCCGAGATCACTTCGAGGCCTGTTGTCGACGCGGGATG
GCAGCTGCGACTCCCCCCACCTCAAAGGACCACCTCGGGCTGTCACATGC
GCTCGGCACGGGTCCCTGCTTCCGCAGGGTGAGGCCGAAGGGCCTCCTGA
CGCCAGCAACGGCAAGTTTAACATTTCGACCGCCCCGCCCCCGCCCTCGC
CCCCGCCCCCGCCCCCGCCCCCGTCAATCTGATCGCCACCGTAGCTCAAG
CTAGTCTGCCACTTCAGCGTGAAGCAGAAGAGCGGGCGCAAGCGAAAGCC
CAGGGAAGGCGAGAACCCGCCGCTGGAAGCGCCGACGCCGCCCCCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10622:1513..4508+

>mRNA_H-canaliculatus_F_contig10622.606.1 ID=mRNA_H-canaliculatus_F_contig10622.606.1|Name=mRNA_H-canaliculatus_F_contig10622.606.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=798bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10622:1513..4508+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGCAACAGCGACGAAGATGACGCCTCCAGCCACCCGTTGAGCGCACC
ACGCGGGACATACCGTCGCCAAGGCCCAGACTTCGGGCCCGGGCCCGAGG
GAAGCAGAGGAAGCGGGGGAGGAGTAGGAGGAGCAGGAGTAGGCGAACGC
CCAGGGGGACAGAAGCAGGAGCCTGGCGGAGGCGGAGCAGGTCGGGGCAT
GGCGTCCGCATCGGGCGAGAGACGCGCCAGCTGCGACTTCTGCTCCCGGA
GGAAGAGGAAGTGCGACGGAGTCAACCCCTGCCAAAACTGCAGGAAGATG
GGCAACAGCGACGAAGATGACGCCTCCAGCCACCCGTTGAGCGCACCACG
CGGGACATACCGTCGCCAAGGCCCAGACTTCGGGCCCGGGCCCGAGGGAA
GCAGAGGAAGCGGGGGAGGAGTAGGAGGAGCAGGAGTAGGCGAACGCCCA
GGGGGACAGAAGCAGGAGCCTGGCGGAGGCGGAGCAGGTCGGGGCATGGC
GTCCGCATCGGGCGAGAGACGCGCCAGCTGCGACTTCTGCTCCCGGAGGA
AGAGGAAGTGCGACGGAGTCAACCCCTGCCAAAACTGCAGGAAGCTCAAG
CTAGTCTGCCACTTCAGCGTGAAGCAGAAGAGCGGGCGCAAGCGAAAGCC
CAGGGAAGGCGAGAACCCGCCGCTGGAAGCGCCGACGCCGCCCCCGCTCA
AGCTAGTCTGCCACTTCAGCGTGAAGCAGAAGAGCGGGCGCAAGCGAAAG
CCCAGGGAAGGCGAGAACCCGCCGCTGGAAGCGCCGACGCCGCCCCCG
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