mRNA_H-canaliculatus_F_contig10618.603.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10618.603.1
Unique NamemRNA_H-canaliculatus_F_contig10618.603.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig10618.603.1 vs. uniprot
Match: D7G8Y0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Y0_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 3.850e-20
Identity = 44/55 (80.00%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:   49 FPGGGLFSFMAPGESISTIDRFTEATRGKGISKIFSPGTKPVPSPWAKVETKPVA 213
            FPGGGLFSFMAPG SISTID+FTEATRGKG +KIFSPGTKP  +PW KV+ KP A
Sbjct:  504 FPGGGLFSFMAPGNSISTIDKFTEATRGKGNAKIFSPGTKPAATPWGKVDKKPTA 558
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10618.603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8Y0_ECTSI3.850e-2080.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10618contigH-canaliculatus_F_contig10618:2817..4232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size517
Cds size513
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10618.603.1prot_H-canaliculatus_F_contig10618.603.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10618 2819..4232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928718.005639-CDS-H-canaliculatus_F_contig10618:2818..30041622928718.005639-CDS-H-canaliculatus_F_contig10618:2818..3004Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10618 2819..3004 -
1696845537.6694992-CDS-H-canaliculatus_F_contig10618:2818..30041696845537.6694992-CDS-H-canaliculatus_F_contig10618:2818..3004Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10618 2819..3004 -
1622928718.0261307-CDS-H-canaliculatus_F_contig10618:3306..35131622928718.0261307-CDS-H-canaliculatus_F_contig10618:3306..3513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10618 3307..3513 -
1696845537.6876433-CDS-H-canaliculatus_F_contig10618:3306..35131696845537.6876433-CDS-H-canaliculatus_F_contig10618:3306..3513Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10618 3307..3513 -
1622928718.045295-CDS-H-canaliculatus_F_contig10618:4112..42321622928718.045295-CDS-H-canaliculatus_F_contig10618:4112..4232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10618 4113..4232 -
1696845537.6968706-CDS-H-canaliculatus_F_contig10618:4112..42321696845537.6968706-CDS-H-canaliculatus_F_contig10618:4112..4232Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10618 4113..4232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10618.603.1

>prot_H-canaliculatus_F_contig10618.603.1 ID=prot_H-canaliculatus_F_contig10618.603.1|Name=mRNA_H-canaliculatus_F_contig10618.603.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=171bp
GRAAAVGGAAGAGGGGFPGGGLFSFMAPGESISTIDRFTEATRGKGISKI
FSPGTKPVPSPWAKVETKPVAGDHGGAGAGDGGGGGRGGGPTPALTAAEK
GALLKRMIMGGGGVEGGAAAAGGGTAAAPARQPDIGRSTSGGNGNGGGGS
GGWGGGGAAASTRPRQLQQQP
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mRNA from alignment at H-canaliculatus_F_contig10618:2817..4232-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10618.603.1 ID=mRNA_H-canaliculatus_F_contig10618.603.1|Name=mRNA_H-canaliculatus_F_contig10618.603.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1416bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10618:2817..4232- (Hapterophycus canaliculatus Oshoro5f female)
GGTCGTGCGGCAGCAGTAGGAGGAGCAGCGGGGGCAGGGGGGGGAGGATT
CCCCGGCGGGGGGCTCTTTTCCTTCATGGCCCCGGGAGAGAGCATCTCGA
CGATCGATAGATTCACGGAGGTGAGGCATGGCCGAACGAAACCTCAAGCG
GACCTTCAAACGAACCCTCGAACATCTCAAACGAACCCTCAGGAGAGGAA
GCGCATCGGAGCGGGGGGGGGGGGCGGAGTGAGGGGCAGAGGCGGCACTA
CTGTCGCAACGTTCTTGTCCCGTTCGAGTTTTGTTGCCTGCGGGCTGGTG
CGTGTTTGGCCCACCCGTGCTCCGAAAGTCGATGGCAGCGAGTGCCGAAA
GGCGGGCGTAACGGCGAGCCAGGTGGCATGTGCTCTCCTCGCCTGCTCTC
CGTCTCGTCCGAGCCACGATTGTTCCCGAGTCACGATTGTCTCAACTGCG
TTATCATAGTAGCGATTCGTTGTTTGCGATACTGTAGGCGTGTTGAGGAT
GCTTCCAGGCCCCGCTCCTCCCGTCTCCGATAAATGAGCAGGCAGGCAAA
GACCAAGCCAAGCCTAGGCCATTGCAGGACAGAAAGCACCCTCGCAGCCC
CCGCAACGCAGAGCTTCCCGGGTAGGCCATGCCATGCTCAATCGCGAACG
CCAAAAACAAACTATCATAGACGTTGTTGTTGTTGTTGTTGTGTCGTCTT
GTCTCGTCTTGTCTCGTAGGCAACTCGTGGGAAAGGGATTTCCAAGATCT
TCTCCCCCGGCACCAAACCGGTTCCCTCCCCCTGGGCGAAAGTCGAAACC
AAGCCTGTTGCCGGAGATCACGGTGGCGCCGGCGCCGGTGATGGTGGTGG
TGGTGGCAGAGGAGGTGGGCCGACACCGGCGTTGACGGCGGCGGAGAAGG
GCGCTCTGCTGAAGCGCATGATCATGGTGGGCCTCGATTTCCTCCTCGCT
CGTCCCTGTTTTCGTATTTTCTCGTCGTTTTCGGTTGGTTGGTTGCGACT
GTACTGCTGGGCTTGTTTAGAGAGCCGTCGACCCCCCGGGAGCTACGTGC
ATTCAGCGCTTAAAGGCACACTCACAATATCCGTCGATGACAAAAGCACG
ATTTCACTCCTTGAGGACGATACCATCTCTTGACGGCCATACCATCTTTC
TTGATGGCCGTATCATGTCTTGATGACGACATCGTATGACGTTTGTTATT
ATTTCATCATCTCTTGTCCTGCACCCAGGGAGGAGGGGGGGTGGAAGGCG
GAGCGGCCGCGGCGGGAGGAGGAACAGCGGCCGCTCCCGCTAGACAGCCC
GACATCGGTAGATCTACGTCGGGCGGCAACGGAAACGGTGGTGGAGGGAG
TGGTGGCTGGGGCGGTGGTGGAGCTGCAGCAAGCACCAGGCCACGGCAAC
TGCAGCAACAGCCACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10618:2817..4232-

>mRNA_H-canaliculatus_F_contig10618.603.1 ID=mRNA_H-canaliculatus_F_contig10618.603.1|Name=mRNA_H-canaliculatus_F_contig10618.603.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1026bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10618:2817..4232- (Hapterophycus canaliculatus Oshoro5f female)
GGTCGTGCGGCAGCAGTAGGAGGAGCAGCGGGGGCAGGGGGGGGAGGATT
CCCCGGCGGGGGGCTCTTTTCCTTCATGGCCCCGGGAGAGAGCATCTCGA
CGATCGATAGATTCACGGAGGGTCGTGCGGCAGCAGTAGGAGGAGCAGCG
GGGGCAGGGGGGGGAGGATTCCCCGGCGGGGGGCTCTTTTCCTTCATGGC
CCCGGGAGAGAGCATCTCGACGATCGATAGATTCACGGAGGCAACTCGTG
GGAAAGGGATTTCCAAGATCTTCTCCCCCGGCACCAAACCGGTTCCCTCC
CCCTGGGCGAAAGTCGAAACCAAGCCTGTTGCCGGAGATCACGGTGGCGC
CGGCGCCGGTGATGGTGGTGGTGGTGGCAGAGGAGGTGGGCCGACACCGG
CGTTGACGGCGGCGGAGAAGGGCGCTCTGCTGAAGCGCATGATCATGGCA
ACTCGTGGGAAAGGGATTTCCAAGATCTTCTCCCCCGGCACCAAACCGGT
TCCCTCCCCCTGGGCGAAAGTCGAAACCAAGCCTGTTGCCGGAGATCACG
GTGGCGCCGGCGCCGGTGATGGTGGTGGTGGTGGCAGAGGAGGTGGGCCG
ACACCGGCGTTGACGGCGGCGGAGAAGGGCGCTCTGCTGAAGCGCATGAT
CATGGGAGGAGGGGGGGTGGAAGGCGGAGCGGCCGCGGCGGGAGGAGGAA
CAGCGGCCGCTCCCGCTAGACAGCCCGACATCGGTAGATCTACGTCGGGC
GGCAACGGAAACGGTGGTGGAGGGAGTGGTGGCTGGGGCGGTGGTGGAGC
TGCAGCAAGCACCAGGCCACGGCAACTGCAGCAACAGCCAGGAGGAGGGG
GGGTGGAAGGCGGAGCGGCCGCGGCGGGAGGAGGAACAGCGGCCGCTCCC
GCTAGACAGCCCGACATCGGTAGATCTACGTCGGGCGGCAACGGAAACGG
TGGTGGAGGGAGTGGTGGCTGGGGCGGTGGTGGAGCTGCAGCAAGCACCA
GGCCACGGCAACTGCAGCAACAGCCA
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