mRNA_H-canaliculatus_F_contig10616.602.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig10616.602.1
Unique NamemRNA_H-canaliculatus_F_contig10616.602.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig10616.602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig10616contigH-canaliculatus_F_contig10616:825..2888 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1248
Cds size894
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig10616.602.1prot_H-canaliculatus_F_contig10616.602.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig10616 992..2701 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928717.870103-UTR-H-canaliculatus_F_contig10616:824..9911622928717.870103-UTR-H-canaliculatus_F_contig10616:824..991Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10616 825..991 +
1696845537.616063-UTR-H-canaliculatus_F_contig10616:824..9911696845537.616063-UTR-H-canaliculatus_F_contig10616:824..991Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10616 825..991 +
1622928717.9572074-UTR-H-canaliculatus_F_contig10616:2701..28881622928717.9572074-UTR-H-canaliculatus_F_contig10616:2701..2888Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10616 2702..2888 +
1696845537.6607752-UTR-H-canaliculatus_F_contig10616:2701..28881696845537.6607752-UTR-H-canaliculatus_F_contig10616:2701..2888Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig10616 2702..2888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928717.8970416-CDS-H-canaliculatus_F_contig10616:991..13681622928717.8970416-CDS-H-canaliculatus_F_contig10616:991..1368Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10616 992..1368 +
1696845537.6279542-CDS-H-canaliculatus_F_contig10616:991..13681696845537.6279542-CDS-H-canaliculatus_F_contig10616:991..1368Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10616 992..1368 +
1622928717.9203172-CDS-H-canaliculatus_F_contig10616:1883..23141622928717.9203172-CDS-H-canaliculatus_F_contig10616:1883..2314Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10616 1884..2314 +
1696845537.6412196-CDS-H-canaliculatus_F_contig10616:1883..23141696845537.6412196-CDS-H-canaliculatus_F_contig10616:1883..2314Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10616 1884..2314 +
1622928717.9383345-CDS-H-canaliculatus_F_contig10616:2615..27011622928717.9383345-CDS-H-canaliculatus_F_contig10616:2615..2701Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10616 2616..2701 +
1696845537.6523356-CDS-H-canaliculatus_F_contig10616:2615..27011696845537.6523356-CDS-H-canaliculatus_F_contig10616:2615..2701Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig10616 2616..2701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig10616.602.1

>prot_H-canaliculatus_F_contig10616.602.1 ID=prot_H-canaliculatus_F_contig10616.602.1|Name=mRNA_H-canaliculatus_F_contig10616.602.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=298bp
MPLPLLLLLPSRVTRPCGQRWTMPEPHLPCRHSVVILKRSDGSWRTSSRA
CTASKHCCGSSNNGNKTRRVRQPRRKNSASLKKTRLSRPRLRRPSKPNWP
SFKPLLPRWTRSFLGGSPLEPAANRSTSGHLPSLVNAVIKRGGPTTAPPG
IGATAPTGTGATTLTGTAGIASTGTGDTSEAQHARTAAALPASITAAALP
TAPAAAPINTTAAAPLLIITATPPPLRTGETPLPPFSVDVPPVGAGRFCQ
STAPVLHCGVGVRVPLLAPAGFRRNARPNACADTAAPATAAFVGIPP*
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mRNA from alignment at H-canaliculatus_F_contig10616:825..2888+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig10616.602.1 ID=mRNA_H-canaliculatus_F_contig10616.602.1|Name=mRNA_H-canaliculatus_F_contig10616.602.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2064bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10616:825..2888+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGGATCCTACCATGGACAGCTCTTCACTGGTGGACTACGAGAAGGACG
ATGATCCTCTGCTACGAAACACACGGCTTCGCGACAGTCTTTTGCATTCG
GCTTCGGGGTCTCCATCTCCGCTGACATCTCCCAGTACCTTCACGGCAGC
TGCTGCTGCCCCGGCCAATGCCTTTGCCTCTGCTGCTTCTCCTGCCGTCG
CGGGTGACCCGGCCTTGCGGGCAAAGGTGGACCATGCCAGAGCCTCACTT
GCCGTGTCGACACAGCGTCGTCATTCTCAAACGCTCCGACGGCAGTTGGC
GGACGTCAAGCAGGGCTTGCACCGCAAGCAAACACTGTTGCGGTAGCAGC
AACAACGGGAACAAGACGAGGCGCGTGCGGCAGCCCAGGCGGAAGAACAG
CGCCAGCTTGAAGAAGACGCGGCTCAGCAGGCCGCGGCTAAGAAGGCCCT
CGAAGCCGAACTGGCCGAGCTTCAAGCCGCTACTACCGAGGTGGACGCGC
AGCTTTCTGGGCGGATCCCCGCTGGAACCGGCCGCAAATCGCAGGTGAAC
GATCAGGTTTCTTACTCAGACGGTCGACCTTCGTTTTTCGTTACCATGTT
GACTTCCCCCGCCCCCGCTTCAGCAGAAGCCACGTCTATCGACCCAGACG
CATACGTCGAGCCCTCCGCACCTTTTGCTACAGCATCTGCTCCGGTTTTC
TCCAACGCTGCCGACTATGTGCTTGATGATTTGGACAAGTTTTATCAGCA
TGCCCCGTTGAGTCAGCCGGCACATGAAACACCCATCGTCCACCTCGCGG
GTGCCAACGAAGCCTGGTGTGGGTGCCGTACGATTGCGAGGGGTTACTAC
CAGCGCAAAAACACATGACAGTCGGCGATTTGCTCCGCATCCCCTCGAGC
AAATTGTCTCCTGCGGAACATGCTCTTCGTTGCCGACTTGTGGGTATGTT
TCGTACCGGATTTATGGGTCTTTCTTCTGCGCAAGGCTGCTCTTTTGCTG
TTTCTACCCCCCCTCCGGCTCCTCCCGCTCCCCTTCCCGCATCGCCGCAT
CTCGCCCAGCACCAGCGGTCATCTCCCCTCTCTGGTCAACGCCGTGATAA
AGCGGGGAGGACCCACAACCGCACCACCGGGGATCGGAGCAACCGCTCCA
ACGGGGACCGGGGCAACCACCCTAACGGGGACCGCGGGAATCGCTTCAAC
GGGGACCGGGGACACGTCAGAAGCTCAGCACGCGAGGACGGCCGCAGCTC
TCCCCGCTTCCATCACCGCAGCAGCTCTTCCAACAGCACCGGCCGCAGCG
CCAATCAACACGACGGCCGCAGCGCCACTTCTGATCATCACGGCGACACC
ACCACCGCTGCGCACGGGGGAAACACCCCTTCCCCCGTTCTCCGTGGACG
TGCCGCCCGTCGGAGCCGGTCGCTTCTGTCAGTCAACAGCTCCAGTTCTC
CACTGCGGAGTCGGAGTCAGGGTTCCCCTTCTCGCTCCAGGCAAGTCGAT
GGTCATGCTCGTTTTTCCGTTGATGCCGCGAACCCTCCGCCCGCTTATGC
TCGTCGCAATGTGCCTTCCTTGGGTTTTCGTTTAGCTGGTTTGCAAATTA
GCGATCATGCCGACCGCTTGCGGCTTTTCGAGCCGGATGCACCGCCCCAC
CGATCTTCAGTAGCTGTCCAGGCGCCCAGGCCTTCCGTAGACGACGCTCC
GCACCAATCCGTTGCTTCTTCGTCAAACTCGCGTACCGAGCAATTGTTGG
AAGAATTACTGGCTCCTATGCGTGCGCCTCCCCCGCCGCAGCCGGATTTC
GCAGAAATGCTCGCCCTAATGCGTGCGCAGACACAGCCGCACCCGCAACA
GCAGCATTCGTCGGTATCCCACCCTGAGCCACCACCAGCAAGTTCTCCGA
CGTCCTGCCAACCGTGGACTCGGCAACCGCCTGCAGCGCCGGCAACAGAC
CAGCACACGACTACACTACCCTCTCCGGTGGTGCACCCTTCGGAGGACGA
CAACCTCGACCAACCGCTGTCGTCTACCGGTGCCCGGAAGAGACAGGCTG
CTGCGGACGCTGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig10616:825..2888+

>mRNA_H-canaliculatus_F_contig10616.602.1 ID=mRNA_H-canaliculatus_F_contig10616.602.1|Name=mRNA_H-canaliculatus_F_contig10616.602.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1788bp|location=Sequence derived from alignment at H-canaliculatus_F_contig10616:825..2888+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCCTTTGCCTCTGCTGCTTCTCCTGCCGTCGCGGGTGACCCGGCCTTG
CGGGCAAAGGTGGACCATGCCAGAGCCTCACTTGCCGTGTCGACACAGCG
TCGTCATTCTCAAACGCTCCGACGGCAGTTGGCGGACGTCAAGCAGGGCT
TGCACCGCAAGCAAACACTGTTGCGGTAGCAGCAACAACGGGAACAAGAC
GAGGCGCGTGCGGCAGCCCAGGCGGAAGAACAGCGCCAGCTTGAAGAAGA
CGCGGCTCAGCAGGCCGCGGCTAAGAAGGCCCTCGAAGCCGAACTGGCCG
AGCTTCAAGCCGCTACTACCGAGGTGGACGCGCAGCTTTCTGGGCGGATC
CCCGCTGGAACCGGCCGCAAATCGCAGATGCCTTTGCCTCTGCTGCTTCT
CCTGCCGTCGCGGGTGACCCGGCCTTGCGGGCAAAGGTGGACCATGCCAG
AGCCTCACTTGCCGTGTCGACACAGCGTCGTCATTCTCAAACGCTCCGAC
GGCAGTTGGCGGACGTCAAGCAGGGCTTGCACCGCAAGCAAACACTGTTG
CGGTAGCAGCAACAACGGGAACAAGACGAGGCGCGTGCGGCAGCCCAGGC
GGAAGAACAGCGCCAGCTTGAAGAAGACGCGGCTCAGCAGGCCGCGGCTA
AGAAGGCCCTCGAAGCCGAACTGGCCGAGCTTCAAGCCGCTACTACCGAG
GTGGACGCGCAGCTTTCTGGGCGGATCCCCGCTGGAACCGGCCGCAAATC
GCAGCACCAGCGGTCATCTCCCCTCTCTGGTCAACGCCGTGATAAAGCGG
GGAGGACCCACAACCGCACCACCGGGGATCGGAGCAACCGCTCCAACGGG
GACCGGGGCAACCACCCTAACGGGGACCGCGGGAATCGCTTCAACGGGGA
CCGGGGACACGTCAGAAGCTCAGCACGCGAGGACGGCCGCAGCTCTCCCC
GCTTCCATCACCGCAGCAGCTCTTCCAACAGCACCGGCCGCAGCGCCAAT
CAACACGACGGCCGCAGCGCCACTTCTGATCATCACGGCGACACCACCAC
CGCTGCGCACGGGGGAAACACCCCTTCCCCCGTTCTCCGTGGACGTGCCG
CCCGTCGGAGCCGGTCGCTTCTGTCAGTCAACAGCTCCAGTTCTCCACTG
CGGAGTCGGAGTCAGGGTTCCCCTTCTCGCTCCAGCACCAGCGGTCATCT
CCCCTCTCTGGTCAACGCCGTGATAAAGCGGGGAGGACCCACAACCGCAC
CACCGGGGATCGGAGCAACCGCTCCAACGGGGACCGGGGCAACCACCCTA
ACGGGGACCGCGGGAATCGCTTCAACGGGGACCGGGGACACGTCAGAAGC
TCAGCACGCGAGGACGGCCGCAGCTCTCCCCGCTTCCATCACCGCAGCAG
CTCTTCCAACAGCACCGGCCGCAGCGCCAATCAACACGACGGCCGCAGCG
CCACTTCTGATCATCACGGCGACACCACCACCGCTGCGCACGGGGGAAAC
ACCCCTTCCCCCGTTCTCCGTGGACGTGCCGCCCGTCGGAGCCGGTCGCT
TCTGTCAGTCAACAGCTCCAGTTCTCCACTGCGGAGTCGGAGTCAGGGTT
CCCCTTCTCGCTCCAGCCGGATTTCGCAGAAATGCTCGCCCTAATGCGTG
CGCAGACACAGCCGCACCCGCAACAGCAGCATTCGTCGGTATCCCACCCT
GACCGGATTTCGCAGAAATGCTCGCCCTAATGCGTGCGCAGACACAGCCG
CACCCGCAACAGCAGCATTCGTCGGTATCCCACCCTGA
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