mRNA_H-canaliculatus_F_contig1054.521.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1054.521.1
Unique NamemRNA_H-canaliculatus_F_contig1054.521.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1054.521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1054contigH-canaliculatus_F_contig1054:3114..3838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size272
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928705.8925414-CDS-H-canaliculatus_F_contig1054:3113..32841622928705.8925414-CDS-H-canaliculatus_F_contig1054:3113..3284Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1054 3114..3284 +
1696845532.0519269-CDS-H-canaliculatus_F_contig1054:3113..32841696845532.0519269-CDS-H-canaliculatus_F_contig1054:3113..3284Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1054 3114..3284 +
1622928705.905376-CDS-H-canaliculatus_F_contig1054:3738..38371622928705.905376-CDS-H-canaliculatus_F_contig1054:3738..3837Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1054 3739..3837 +
1696845532.0665739-CDS-H-canaliculatus_F_contig1054:3738..38371696845532.0665739-CDS-H-canaliculatus_F_contig1054:3738..3837Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1054 3739..3837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1054.521.1prot_H-canaliculatus_F_contig1054.521.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1054 3114..3837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1054.521.1

>prot_H-canaliculatus_F_contig1054.521.1 ID=prot_H-canaliculatus_F_contig1054.521.1|Name=mRNA_H-canaliculatus_F_contig1054.521.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=90bp
GRSRRHSAGGGGGDGNRAMGHGSGGGGQGFGGRPARSSMDGPGAPQGRGS
AGGWGGNVGMHRHNMQMQHQNRHHLAPTVPGGGGGQHPGF
back to top

mRNA from alignment at H-canaliculatus_F_contig1054:3114..3838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1054.521.1 ID=mRNA_H-canaliculatus_F_contig1054.521.1|Name=mRNA_H-canaliculatus_F_contig1054.521.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=725bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1054:3114..3838+ (Hapterophycus canaliculatus Oshoro5f female)
GGGAGGTCAAGGAGGCATAGCGCCGGTGGCGGCGGCGGCGACGGCAACCG
AGCGATGGGCCATGGTAGCGGTGGCGGCGGGCAGGGCTTCGGCGGCCGGC
CCGCTAGGTCGTCTATGGACGGCCCGGGGGCGCCCCAAGGGCGGGGCAGC
GCCGGCGGGTGGGGCGGAAACGTGCGTACACGTACAGACGGGTCTCCTTT
GCTGCTGCTGCTGGTGCTGCTGCTGCTTGTGCAACTCGGCCGCCTCTCGA
TCTTGTCTACTTTATTACCAGGCCAACAAGGGCCAGGGGTGTTTGATCTC
CGAAGCGCGCCGCACTCTGCTGTTGTGTTCGCGTGAGATGAAAGCCGCAA
GGGGTCGCAGACATTGCTTGTGGGGGAAGACCGGTGATCCATCTTTTGCC
GAAGCGCCTGTGCCAATGGCCTGTTTTCCCTGGCCGGGGGAGGAGTGCCA
TTTTCCCTGGACGGCGCTCGCGCATCTTTTACTCGCGTCCTTACCGCTCT
CTCCATCTATCTCTCTCTTTCTTTCTCTCTCTCTCTCCCTCTCTCTCGCT
CCCTCTCTCTCTCTCTCCCTCTCCTTTTCTCGATGCGCGTCCTCCTCCTT
CCTTGCACCACCATCGCCACAACAGGTCGGCATGCACCGCCACAACATGC
AGATGCAGCACCAGAACCGCCATCACCTCGCCCCCACCGTCCCCGGCGGC
GGCGGCGGACAGCACCCTGGCTTCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1054:3114..3838+

>mRNA_H-canaliculatus_F_contig1054.521.1 ID=mRNA_H-canaliculatus_F_contig1054.521.1|Name=mRNA_H-canaliculatus_F_contig1054.521.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=540bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1054:3114..3838+ (Hapterophycus canaliculatus Oshoro5f female)
GGGAGGTCAAGGAGGCATAGCGCCGGTGGCGGCGGCGGCGACGGCAACCG
AGCGATGGGCCATGGTAGCGGTGGCGGCGGGCAGGGCTTCGGCGGCCGGC
CCGCTAGGTCGTCTATGGACGGCCCGGGGGCGCCCCAAGGGCGGGGCAGC
GCCGGCGGGTGGGGCGGAAACGGGAGGTCAAGGAGGCATAGCGCCGGTGG
CGGCGGCGGCGACGGCAACCGAGCGATGGGCCATGGTAGCGGTGGCGGCG
GGCAGGGCTTCGGCGGCCGGCCCGCTAGGTCGTCTATGGACGGCCCGGGG
GCGCCCCAAGGGCGGGGCAGCGCCGGCGGGTGGGGCGGAAACGTCGGCAT
GCACCGCCACAACATGCAGATGCAGCACCAGAACCGCCATCACCTCGCCC
CCACCGTCCCCGGCGGCGGCGGCGGACAGCACCCTGGCTTCGTCGGCATG
CACCGCCACAACATGCAGATGCAGCACCAGAACCGCCATCACCTCGCCCC
CACCGTCCCCGGCGGCGGCGGCGGACAGCACCCTGGCTTC
back to top