prot_H-canaliculatus_M_contigs9530.1.1 (polypeptide) Hapterophycus canaliculatus Oshoro7m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_M_contigs9530.1.1
Unique Nameprot_H-canaliculatus_M_contigs9530.1.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Sequence length292
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9530.1.1 vs. uniprot
Match: D7FK79_ECTSI (Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK79_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 6.520e-75
Identity = 120/183 (65.57%), Postives = 150/183 (81.97%), Query Frame = 0
Query:  109 MVSGGIEPNAITLSYMVMAQAWGSSPDMYRTLAKMDEKGWIPNRAAQLSAMSSMWQRKDTEGVLQMMQVMFDSEFIPTEATFAVALMSAAQLGRVDFAKVLFDRRNAFGFEPKPEIYSSIMLAHAKANLHEESLGYWRQLVCLDGVGEMAIAPATCQAALKSAVVCNQWEEVETIAALLKVHR 291
            MVS G+EP+ +TLS++ MAQAWGSS DMYRTLA+MDE+GW P RAA LSA++ MWQRKDTEGVLQM++ M +  + PTEA FA+ALMSA +LGR D AKVLF+ R+  G EPK EIYSS+MLAH+KA+LHEESL YWRQLVCLDGVG +AI   TC++AL+SA+V + W+EV+TI  +L+  R
Sbjct:    1 MVSKGLEPDVLTLSHLAMAQAWGSSNDMYRTLAEMDERGWTPTRAAHLSAIAFMWQRKDTEGVLQMIERMLEKSYQPTEAAFAMALMSAGRLGRADLAKVLFEWRSESGLEPKQEIYSSMMLAHSKADLHEESLAYWRQLVCLDGVGGVAIDLETCRSALRSAIVSDHWDEVDTIVGMLRGKR 183          
BLAST of mRNA_H-canaliculatus_M_contigs9530.1.1 vs. uniprot
Match: D7FK78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK78_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 3.430e-45
Identity = 102/289 (35.29%), Postives = 161/289 (55.71%), Query Frame = 0
Query:    1 TPAQELTSRLRRIRTVKGPGHLNQAMQVLAKGRKEGVPPDITCYNILIKMIAMERWVMTDKTKPAMVEELI-RMIEQDGLAKNIHTFNGIIFVYAKAHALAKAERAYDKMVSGGIEPNAITLSYMVMAQAWGSSPDMYRTLAKMDEKGWIPNRAAQLSAMSSMWQRKDTEGVLQMMQVMFDSEFIPTEATFAVALMSAAQLGRVDFAKVLFDRRNAFGFEPKPEIYSSIMLAHAKANLHEESLGYWRQLVCLDGVGEMAIAPATCQAALKSAVVCNQWEEVETIAALLK 288
            TPA  LT+RLRR+    G G    A+ +L KGR+ G+  D+  YN ++KMIA +  +  DK K   +E L  +M E D L     T++ +I+ Y++     +A R  ++M   G++P   TLS M++A +WGS  DM R  ++M EKGW P + A  + + ++ + +D EG+L   + M ++    TEA   VA+ +AA  G   FA+ L          P+ ++Y  +M+A   A  HEE L  WR+LV LDG+G++ +   T   AL SAV   +W+E+E I  +++
Sbjct:   23 TPAAMLTTRLRRMFASNGNGPWWLAVHLLEKGRQNGIK-DVKVYNTVLKMIATDERMTEDKMKE--MERLFEQMTEDDELEPEALTYSHLIYGYSQGRKEGEAVRLLEEMTVKGLQPERKTLSSMIVAHSWGSVEDMRRVSSEMREKGWTPTQRANSAMIGALRRAEDWEGILDTTRAMLENGQTMTEAGLVVAIKAAANAGNAGFARELLLTHGKNKHRPQEQLYVCVMVALRNACQHEECLACWRELVLLDGLGDVKLNGKTYNLALTSAVKMERWDEMEAILDMMQ 308          
BLAST of mRNA_H-canaliculatus_M_contigs9530.1.1 vs. uniprot
Match: A0A6H5KCB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCB7_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 8.700e-45
Identity = 103/290 (35.52%), Postives = 158/290 (54.48%), Query Frame = 0
Query:    1 TPAQELTSRLRRIRTVKGPGHLNQAMQVLAKGRKEGVPPDITCYNILIKMIAMERWVMTDKTKPAMVEELIRMIEQDGLAKNIHTFNGIIFVYAKAHALAKAERAYDKMVSGGIEPNAITLSYMVMAQAWGSSPDMYRTLAKMDEKGWIPNRAAQLSAMSSMWQRKDTEGVLQMMQVMFDSEFIPTEATFAVALMSAAQLGRVDFAKVLFDRRNAFGFEPKPEIYSSIMLAHAKANLHEESLGYWRQLVCLDGVGEMAIAPATCQAALKSAVVCNQWEEVETIAALLKVH 290
            TPA  L +RLR +    G G    A+ +L KGR+ G+  D+  YNI   MIA +  +  DK K  M     +M E DGL     T++ +I  Y++     +A R  ++M   G++P   TLS M++A +WGS  DM R   +M EKGW P R A  + + ++W+ +D EG+L   + M ++    TEA   VA+ +A  +G   FA+ L          P+ ++Y  +M+A   A+ HEE L  WR+LV LDG+G++ +   T   AL SAV   +W+E+ETI  +++V 
Sbjct:  105 TPAAMLATRLRGMFPGNGNGPWWLAVHLLEKGRQNGIK-DVKVYNI---MIATDEHMTEDKLKE-MKRLFEQMTEDDGLEPEALTYSHLIHGYSQVRKEGEAVRLLEEMAVKGLQPERKTLSSMIVAHSWGSIEDMRRVSKEMQEKGWTPTRRANSAMIGALWRAEDWEGILDTTRAMLEAGQTMTEAGLVVAIKAATNVGNAGFARELLLIHGKNKHRPQEQLYVLVMVALRNASQHEECLACWRELVLLDGLGDVKLDGRTYNLALMSAVKTERWDEMETILDMMQVQ 389          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9530.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FK79_ECTSI6.520e-7565.57Pentatricopeptide repeat-containing protein, putat... [more]
D7FK78_ECTSI3.430e-4535.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCB7_9PHAE8.700e-4535.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 81..125
e-value: 3.7E-8
score: 33.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 84..118
e-value: 2.1E-4
score: 19.3
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 20..51
e-value: 3.7E-4
score: 20.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 82..116
score: 10.150222
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 7..135
e-value: 6.7E-18
score: 66.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 137..291
e-value: 1.3E-12
score: 49.8
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 20..247

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9530contigH-canaliculatus_M_contigs9530:760..3974 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9530.1.1mRNA_H-canaliculatus_M_contigs9530.1.1Hapterophycus canaliculatus Oshoro7m malemRNAH-canaliculatus_M_contigs9530 760..3974 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_M_contigs9530.1.1 ID=prot_H-canaliculatus_M_contigs9530.1.1|Name=mRNA_H-canaliculatus_M_contigs9530.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=292bp
TPAQELTSRLRRIRTVKGPGHLNQAMQVLAKGRKEGVPPDITCYNILIKM
IAMERWVMTDKTKPAMVEELIRMIEQDGLAKNIHTFNGIIFVYAKAHALA
KAERAYDKMVSGGIEPNAITLSYMVMAQAWGSSPDMYRTLAKMDEKGWIP
NRAAQLSAMSSMWQRKDTEGVLQMMQVMFDSEFIPTEATFAVALMSAAQL
GRVDFAKVLFDRRNAFGFEPKPEIYSSIMLAHAKANLHEESLGYWRQLVC
LDGVGEMAIAPATCQAALKSAVVCNQWEEVETIAALLKVHR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat