prot_H-canaliculatus_M_contigs9255.1.1 (polypeptide) Hapterophycus canaliculatus Oshoro7m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_M_contigs9255.1.1
Unique Nameprot_H-canaliculatus_M_contigs9255.1.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Sequence length714
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9255.1.1 vs. uniprot
Match: A0A6H5JCH7_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH7_9PHAE)

HSP 1 Score: 490 bits (1262), Expect = 5.860e-160
Identity = 429/765 (56.08%), Postives = 472/765 (61.70%), Query Frame = 0
Query:    2 ADTAEEGAASVEPTKPARRGSLHS-------PEAGTSRLDEELDQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSSGRPSV--YRQTSAHRLFRVATPESKRA---------VDGGSQAAGSYETTIAPMSGGDDPRLRAL--HAAD-SRRSXXXXXXXXXXXXXXXXXXXXGDRFFPKRR-GRDDREVLDGTDVLQQISNLTSTEPSNEREVFVGGLRESEDSVHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQESAALNAVVADASTHVIRGTTVSVQWSRGAKDAG--GDRPRRRNSGTSNASXXXXXXXXXXXXXXXXKMTMFPHKGXXXXXXXXXXXXSXXATGGRSSXXXXXXXXXXXXXXXFSPMRSRGAANM----SSXXXXVPYGFGAGRHGEHHNQPMVCVVVPAQRAAALGLAPHPAHHLHSPGTCTSRGSPPHDSHFAALAQSNAVSGGGGRAGGGHQGHPSHMRSHSQPVSXXXXXXXXGSP----------HGSVDHHHGGMASPXXXXXXXXXXXXXSPGHXM-SPSSXXXXXXXXXXXXXXXXXA-------------RSYGGPPSMHMPPMRRERRRNTEPRDYPLVANGQ----PSYSEYERSSESQPEHHVNSNSYVSPEWGYDDAGSSR-----GGTPAAAVGVVRPSSPPATMRSSMHAFGXXXXXXXXXXXXXAPRPPSLSPRAYENHYSSARYNSRGA-DGFSVTGISGGASGGVAMRR 704
            AD AEE A   EP+KPAR GS+ +       PEA   RL+ E     XXXXXXXXXXXXXXXXXXXXXXXXX               +G+P+V  YRQ SAHRLFR A PE KR          + G    A S     +PM G +D RLR+L  HA+D SRRS                     DRFFPKR  GRDDREVLDG+DVLQQISN+TSTEPSNEREVFVGGLRESED+VHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQE+AALNAVVADASTHVIRGTTVSVQWSRGAKDAG  GDRPRR         XXXXXX          +  MFPHKG  XXXXXXXXXX X    G                  FSPMRSRGA +     S+    VPYGFG GRHGEHHNQPMVCVVVPAQRAAALG APHP H  HS G CTSRG+ P D HF++LAQSNA S         H G+ SH RS+SQP+S  XXXXXX             H        G AS              +P H + +PS XXXXXXXXXXXXXXXXX              RSYG PP+MHMPPM RER+   EPRDYP  A+G     PS+ EYERSS+S  E H++S  +  PEWGYDDAG S      GG+ A A+GV R  SPP  +RS +                 APRPPS SPRAY+ HYSS RYN RG  + FSV G+ GGASGGVA RR
Sbjct:   40 ADPAEERAGLAEPSKPARHGSVFAVATPPATPEAAADRLEGEQHNXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------AGKPAVAMYRQMSAHRLFRAAPPEPKRQQWKVCEETPLAGDDTVAAS--AAASPMCG-EDSRLRSLSWHASDCSRRSPPPPPGLEYSHSNRK-----NDRFFPKRIVGRDDREVLDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDAVHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQEAAALNAVVADASTHVIRGTTVSVQWSRGAKDAGSGGDRPRRXXXXXXXXXXXXXXXPSNGSGRSCARPGMFPHKGGGXXXXXXXXXXXXAGACG------------VGCSHGFSPMRSRGAGHSMHGPSAGGGGVPYGFGGGRHGEHHNQPMVCVVVPAQRAAALGFAPHPPHGFHSTGKCTSRGTAPCDGHFSSLAQSNAASXXXXXX---HPGYASHTRSNSQPMSHGXXXXXXXXXXXXXXXXXXXHXXFXXXXXGAAS-------------GTPHHLLVNPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSYGAPPAMHMPPMPRERQGRAEPRDYPAGASGSSGSSPSFGEYERSSQS--ESHLHS-PHALPEWGYDDAGGSGAGRAVGGSMATALGVTRSQSPPPMVRSRIGG--------------GAPRPPSASPRAYDGHYSSTRYNGRGGFNCFSVAGM-GGASGGVATRR 735          
BLAST of mRNA_H-canaliculatus_M_contigs9255.1.1 vs. uniprot
Match: D7FM18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM18_ECTSI)

HSP 1 Score: 253 bits (647), Expect = 2.620e-73
Identity = 205/379 (54.09%), Postives = 229/379 (60.42%), Query Frame = 0
Query:  369 FSPMRSRGAANM----SSXXXXVPYGFGAGRHGEHHNQPMVCVVVPAQRAAALGLAPHPAHHLHSPGTCTSRGSPPHDSHFAALAQSNAVSGGGGRAGGG-HQGHPSHMRSHSQPVSXXXXXXXX---------GSPHGSVDHHHGGMASPXXXXXXXXXXXXXSPGHX-MSPSSXXXXXXXXXXXXXXXXX-------------ARSYGGPPSMHMPPMRRERRRNTEPRDYPLVANG----------QPSYSEYERSSESQPEHHVNSNSYVSPEWGYDDAGSSR-----GGTPAAAVGVVRPSSPPATMRSSMHAFGXXXXXXXXXXXXXAPRPPSLSPRAYENHYSSARYNSRGA-DGFSVTGISGGASGGVAMR 703
            FSPMRSRGA +     S+    VPYG+G GRHGEHHNQPMVCVVVPAQRAAALGLAPHP H LHS G CTSRG+ P D HF++LAQS+             H G+ SH RSHSQP+S  XXXXXX         GSPHG+ DH     A+              +P H  +SPS XXXXXXXXXXXXXXXXX              RSYGGPP+MHMPPM RER+   EPRDYP  A+G           PS+ EYERSS+S  E H++S +Y  PEWGYDDAG S      GG  A A GVVR  SPP  +RS                   APRPPS SPRAY+ HYSS RYN RG  +GFSV GI GGASGGVA R
Sbjct:   33 FSPMRSRGAGHSIHGPSAGGGGVPYGYGGGRHGEHHNQPMVCVVVPAQRAAALGLAPHPPHGLHSTGKCTSRGTAPCDGHFSSLAQSSXXXXXXXXXXXXXHPGYASHTRSHSQPISHGXXXXXXXXXXYGHHGGSPHGNFDHXXXXXAA-------------GTPHHLSVSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRSYGGPPAMHMPPMPRERQGRAEPRDYPSGASGXXXXXXXXXXSPSFGEYERSSQS--ESHLHS-AYALPEWGYDDAGGSGAGRAGGGAMATAHGVVRSQSPPPMVRSR--------------NGGGAPRPPSASPRAYDGHYSSTRYNGRGGVEGFSVAGI-GGASGGVATR 380          
BLAST of mRNA_H-canaliculatus_M_contigs9255.1.1 vs. uniprot
Match: D7FM19_ECTSI (RNA recognition motif. (A.k.a. RRM, RBD, or RNP domain) containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM19_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.330e-52
Identity = 176/271 (64.94%), Postives = 189/271 (69.74%), Query Frame = 0
Query:    2 ADTAEEGAASVEPTKPARRGSLH---SPEAGTSRLDEELDQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSSSGRPSVYRQTSAHRLFRVATPESKR--------AVDGGSQAAGSYETTIAPMSGGDDPRLRAL--HAADSRRSXXXXXXXXXXXXXXXXXXXXGDRFFPKRRG-RDDREVLDGTDVLQQISNLTSTEPSNEREVFVGGLRESEDSVHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQE 258
            AD AE+ A   EP+KPARRGS+    +P A      + L+ +Q   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         +YRQTSAHRLFR A PE KR            G + A S     APMSG +D RLR+   HA      XXXXXX               DRFFPKR   RDDREVLDG+DVLQQISNLTSTEPSNEREVFVGGLRESED+VHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQE
Sbjct:   40 ADPAEQRAGLAEPSKPARRGSVFMVATPPATPEAAADSLEGEQRIHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------MYRQTSAHRLFRAAPPEPKRQQWKVCEKTPLAGDETA-STSAAAAPMSG-EDSRLRSSSWHAXXXXXXXXXXXXGLEYGHNNNK----NDRFFPKRIVCRDDREVLDGSDVLQQISNLTSTEPSNEREVFVGGLRESEDAVHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQE 295          
BLAST of mRNA_H-canaliculatus_M_contigs9255.1.1 vs. uniprot
Match: A0A7J7L5F8_9MAGN (RRM domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7L5F8_9MAGN)

HSP 1 Score: 58.2 bits (139), Expect = 9.720e-7
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 0
Query:  183 GTDVLQQISNL-TSTEPSNEREVFVGGLRESEDSVHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQESAALNAVVA 267
            GT ++++I  L T T  S   ++F+  L     S + T+EEL   F+ FG I+ VS+ RD RTQR +GFAFV F  ES A  A+ A
Sbjct:    2 GTAMVRRIKTLITQTHRSFSSQIFISRL-----SFYTTDEELNRLFSPFGQIKQVSLVRDPRTQRPKGFAFVTFAMESEAQKALEA 82          
BLAST of mRNA_H-canaliculatus_M_contigs9255.1.1 vs. uniprot
Match: A0A2G9HYD1_9LAMI (RRM domain-containing protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9HYD1_9LAMI)

HSP 1 Score: 52.8 bits (125), Expect = 4.950e-5
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 0
Query:  203 EVFVGGLRESEDSVHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQESAALNAVVADASTHVIRGTTVSVQWSRGAK 288
            E+FV  L     S +IT  EL   FA FG+IE V + +D RTQR +GF FVKF  E  A NA+ A  +  ++ G  + V+++   K
Sbjct:    8 ELFVSRL-----SFYITTGELEKLFAPFGLIEEVRLIKDPRTQRPKGFGFVKFAAEEHAQNALKA-MNGRIVDGRLIFVEFAETEK 87          
BLAST of mRNA_H-canaliculatus_M_contigs9255.1.1 vs. uniprot
Match: A0A4D9AC15_SALSN (Cold-inducible RNA-binding protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9AC15_SALSN)

HSP 1 Score: 52.4 bits (124), Expect = 8.070e-5
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 0
Query:  203 EVFVGGLRESEDSVHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQESAALNAVVA 267
            E+FV  L     S +IT  EL   F+ FG+IE V + +D RTQR +GF+FVKF +E  A NA+ A
Sbjct:    8 ELFVSRL-----SFYITTGELERLFSPFGLIEQVRLVKDPRTQRSKGFSFVKFVREIDAKNALKA 67          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9255.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JCH7_9PHAE5.860e-16056.08RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FM18_ECTSI2.620e-7354.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FM19_ECTSI1.330e-5264.94RNA recognition motif. (A.k.a. RRM, RBD, or RNP do... [more]
A0A7J7L5F8_9MAGN9.720e-743.02RRM domain-containing protein n=1 Tax=Kingdonia un... [more]
A0A2G9HYD1_9LAMI4.950e-540.70RRM domain-containing protein n=1 Tax=Handroanthus... [more]
A0A4D9AC15_SALSN8.070e-547.69Cold-inducible RNA-binding protein n=1 Tax=Salvia ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 30..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..176
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 297..319
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 505..549
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 449..714
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 669..687
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 285..353
NoneNo IPR availablePANTHERPTHR48033:SF10RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINcoord: 195..478
NoneNo IPR availablePANTHERPTHR48033:SF10RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINcoord: 39..285
NoneNo IPR availablePANTHERPTHR48033RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINcoord: 195..478
NoneNo IPR availablePANTHERPTHR48033RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEINcoord: 39..285
NoneNo IPR availableSUPERFAMILY81995beta-sandwich domain of Sec23/24coord: 40..85
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 203..282
e-value: 1.4E-16
score: 71.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 217..266
e-value: 8.3E-12
score: 44.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 202..286
score: 16.61952
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 192..313
e-value: 4.3E-20
score: 74.1
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 196..316

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9255contigH-canaliculatus_M_contigs9255:18..4779 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9255.1.1mRNA_H-canaliculatus_M_contigs9255.1.1Hapterophycus canaliculatus Oshoro7m malemRNAH-canaliculatus_M_contigs9255 18..4779 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_M_contigs9255.1.1 ID=prot_H-canaliculatus_M_contigs9255.1.1|Name=mRNA_H-canaliculatus_M_contigs9255.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=714bp
SADTAEEGAASVEPTKPARRGSLHSPEAGTSRLDEELDQQQQQQQQQQQQ
QQLQRQQQQQQQLQQLQRNAKQQEEPSEPSSSGRPSVYRQTSAHRLFRVA
TPESKRAVDGGSQAAGSYETTIAPMSGGDDPRLRALHAADSRRSPPPPPP
GFALDYNNNNNNNNGDRFFPKRRGRDDREVLDGTDVLQQISNLTSTEPSN
EREVFVGGLRESEDSVHITEEELATYFAKFGVIESVSINRDDRTQRGRGF
AFVKFFQESAALNAVVADASTHVIRGTTVSVQWSRGAKDAGGDRPRRRNS
GTSNASSGNGTSPPGGGNRSSPKMTMFPHKGGGGGGRSGGGGGSGGATGG
RSSGGSGGVSCGVGCSHGFSPMRSRGAANMSSGGGGVPYGFGAGRHGEHH
NQPMVCVVVPAQRAAALGLAPHPAHHLHSPGTCTSRGSPPHDSHFAALAQ
SNAVSGGGGRAGGGHQGHPSHMRSHSQPVSGSGGYGHHGSPHGSVDHHHG
GMASPHHVSSSSARHVSVSPGHHMSPSSSVHHISPTAGHHVSPNSARSYG
GPPSMHMPPMRRERRRNTEPRDYPLVANGQPSYSEYERSSESQPEHHVNS
NSYVSPEWGYDDAGSSRGGTPAAAVGVVRPSSPPATMRSSMHAFGGGGGG
GGSRNGGGAPRPPSLSPRAYENHYSSARYNSRGADGFSVTGISGGASGGV
AMRRRSESSAVMGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom