prot_H-canaliculatus_M_contigs9154.1.1 (polypeptide) Hapterophycus canaliculatus Oshoro7m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-canaliculatus_M_contigs9154.1.1
Unique Nameprot_H-canaliculatus_M_contigs9154.1.1
Typepolypeptide
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Sequence length153
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9154.1.1 vs. uniprot
Match: D7FU80_ECTSI (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU80_ECTSI)

HSP 1 Score: 303 bits (777), Expect = 6.590e-93
Identity = 141/152 (92.76%), Postives = 147/152 (96.71%), Query Frame = 0
Query:    1 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASELMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCRVVSYLGDAGEHADVPTPAILKPVALWTGKQAMSLMVRPSKENNILVNFESKEKNYRGNRFLCPSDG 152
            MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEAS+LMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFD ETFC+V SY+GDAGEH D+P PAI+KPVALWTGKQAMSLMVRPSKEN ILVNFESKEKNY+GNRFLCPSDG
Sbjct:  533 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASQLMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDHETFCKVASYMGDAGEHVDIPPPAIMKPVALWTGKQAMSLMVRPSKENKILVNFESKEKNYKGNRFLCPSDG 684          
BLAST of mRNA_H-canaliculatus_M_contigs9154.1.1 vs. uniprot
Match: A0A6H5KI81_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI81_9PHAE)

HSP 1 Score: 291 bits (746), Expect = 9.260e-90
Identity = 142/163 (87.12%), Postives = 145/163 (88.96%), Query Frame = 0
Query:    1 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEA-----------SELMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCRVVSYLGDAGEHADVPTPAILKPVALWTGKQAMSLMVRPSKENNILVNFESKEKNYRGNRFLCPSDG 152
            MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEA           S LMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFD ETFCRV SY+GDAGE  DVP PAI+KPVALWTGKQAMSLMVRPSKEN ILVNFESKEKNY+GNRFLCPSDG
Sbjct:  542 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEAAQASRRYVASPSRLMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDFETFCRVASYMGDAGEQVDVPPPAIMKPVALWTGKQAMSLMVRPSKENKILVNFESKEKNYKGNRFLCPSDG 704          
BLAST of mRNA_H-canaliculatus_M_contigs9154.1.1 vs. uniprot
Match: A0A662WCJ9_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WCJ9_9STRA)

HSP 1 Score: 241 bits (615), Expect = 3.300e-71
Identity = 108/152 (71.05%), Postives = 129/152 (84.87%), Query Frame = 0
Query:    1 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASELMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCRVVSYLGDAGEHADVPTPAILKPVALWTGKQAMSLMVRPSKENNILVNFESKEKNYRGNRFLCPSDG 152
            MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEAR EA  LM V  NL+TPRNGEPLVAATQDFLTAAYL+TQ++IFF+RE FC+V+S + DAGEH ++P PAI+ PV LWTGKQ ++L+V+P+ +  +LVN E KE+NY  N+F+C  DG
Sbjct:  496 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARTEAITLMGVEENLITPRNGEPLVAATQDFLTAAYLLTQKNIFFNREQFCQVISIMSDAGEHIELPPPAIVLPVRLWTGKQVINLLVKPNSQTKVLVNLELKERNYTSNKFMCWKDG 647          
BLAST of mRNA_H-canaliculatus_M_contigs9154.1.1 vs. uniprot
Match: A0A662YIK9_9STRA (DNA-directed RNA polymerase subunit n=32 Tax=Peronosporaceae TaxID=4777 RepID=A0A662YIK9_9STRA)

HSP 1 Score: 241 bits (615), Expect = 5.950e-71
Identity = 108/152 (71.05%), Postives = 129/152 (84.87%), Query Frame = 0
Query:    1 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASELMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCRVVSYLGDAGEHADVPTPAILKPVALWTGKQAMSLMVRPSKENNILVNFESKEKNYRGNRFLCPSDG 152
            MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEAR EA  LM V  NL+TPRNGEPLVAATQDFLTAAYL+TQ++IFF+RE FC+V+S + DAGEH ++P PAI+ PV LWTGKQ ++L+V+P+ +  +LVN E KE+NY  N+F+C  DG
Sbjct:  496 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARTEAITLMGVEENLITPRNGEPLVAATQDFLTAAYLLTQKNIFFNREQFCQVISIMSDAGEHIELPPPAIVLPVRLWTGKQVINLLVKPNSQTKVLVNLELKERNYTSNKFMCWKDG 647          
BLAST of mRNA_H-canaliculatus_M_contigs9154.1.1 vs. uniprot
Match: A0A836CEF0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEF0_9STRA)

HSP 1 Score: 241 bits (614), Expect = 8.030e-71
Identity = 114/161 (70.81%), Postives = 131/161 (81.37%), Query Frame = 0
Query:    1 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASELMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCRVVSYLGDAGEHADVPTPAILKPVALWTGKQA---------MSLMVRPSKENNILVNFESKEKNYRGNRFLCPSDG 152
            MPWRTFRFNECVC+PYNADFDGDEMNMHLPQTEEARAEA+ LMAV  NLVTP+NGEPLVAATQDFLTA+YLITQ +IFFD+E FC + +Y+GDAGE  D+P PAI+ PVALWTGKQA         MSL+VRP +++ +LVNFE+KEKNY      C  DG
Sbjct:  501 MPWRTFRFNECVCNPYNADFDGDEMNMHLPQTEEARAEAATLMAVVNNLVTPKNGEPLVAATQDFLTASYLITQNEIFFDKEEFCEIATYMGDAGERIDMPIPAIVAPVALWTGKQAKCCDVCKQVMSLLVRPQRDSPVLVNFETKEKNYTTGLNFCEKDG 661          
BLAST of mRNA_H-canaliculatus_M_contigs9154.1.1 vs. uniprot
Match: A0A7S2BSJ8_9STRA (DNA-directed RNA polymerase subunit (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSJ8_9STRA)

HSP 1 Score: 232 bits (592), Expect = 3.190e-70
Identity = 110/152 (72.37%), Postives = 124/152 (81.58%), Query Frame = 0
Query:    1 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASELMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCRVVSYLGDAGEHADVPTPAILKPVALWTGKQAMSLMVRPSKENNILVNFESKEKNYRGNRFLCPSDG 152
            M WRTFRFNECVC+PYNADFDGDEMNMHLPQTEEARAEA+ LMAVP NLVT RNGEPLVAATQDFLT+AYL+TQ+++FF RE FCR+V+ +GD  E  DVP PAI KPV LWTGKQ   L+VRP+K  ++ VN E KEKNY  N  LC  DG
Sbjct:  485 MQWRTFRFNECVCAPYNADFDGDEMNMHLPQTEEARAEAAILMAVPNNLVTCRNGEPLVAATQDFLTSAYLLTQKNVFFTREHFCRLVAMIGDGDEQVDVPPPAIFKPVRLWTGKQIFGLLVRPNKGVDVRVNLELKEKNYTSNLQLCHKDG 636          
BLAST of mRNA_H-canaliculatus_M_contigs9154.1.1 vs. uniprot
Match: A0A2D4BQB8_PYTIN (DNA-directed RNA polymerase subunit n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BQB8_PYTIN)

HSP 1 Score: 237 bits (605), Expect = 1.320e-69
Identity = 104/152 (68.42%), Postives = 129/152 (84.87%), Query Frame = 0
Query:    1 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASELMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCRVVSYLGDAGEHADVPTPAILKPVALWTGKQAMSLMVRPSKENNILVNFESKEKNYRGNRFLCPSDG 152
            MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEAR EA  LM V  NL+TPRNGEPLVAATQDFLTAAYL+TQ+++FF+RE FC+V++ + DA +H ++P PA++ PV LWTGKQ ++L+VRP+ + N+LVN E KE+NY  N+++C  DG
Sbjct:  502 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARTEAITLMGVEQNLITPRNGEPLVAATQDFLTAAYLLTQKNVFFNREQFCQVIAIMSDALDHIELPPPAVILPVRLWTGKQVINLLVRPNSQTNVLVNLELKERNYTANKYMCWKDG 653          
BLAST of mRNA_H-canaliculatus_M_contigs9154.1.1 vs. uniprot
Match: A0A397ELV8_9STRA (DNA-directed RNA polymerase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ELV8_9STRA)

HSP 1 Score: 219 bits (559), Expect = 8.300e-69
Identity = 101/152 (66.45%), Postives = 124/152 (81.58%), Query Frame = 0
Query:    1 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASELMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCRVVSYLGDAGEHADVPTPAILKPVALWTGKQAMSLMVRPSKENNILVNFESKEKNYRGNRFLCPSDG 152
            + WRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEA+ LM VP NL+T RNGEPLVAATQDFLTA+YL+TQ++IFF+RE FC+V++ +GD  +  ++P  AI+ P+ LWTGKQ  SL+VRP++   + VNFE KE+NY  N  +C  DG
Sbjct:  104 LQWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEAATLMCVPNNLITSRNGEPLVAATQDFLTASYLLTQKNIFFNREQFCQVLTLMGDGIDDIELPEAAIVCPIRLWTGKQIFSLLVRPNRRCPVKVNFELKERNYTTNLSMCYKDG 255          
BLAST of mRNA_H-canaliculatus_M_contigs9154.1.1 vs. uniprot
Match: A0A484E7X0_BRELC (DNA-directed RNA polymerase subunit n=2 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E7X0_BRELC)

HSP 1 Score: 235 bits (599), Expect = 8.460e-69
Identity = 106/152 (69.74%), Postives = 128/152 (84.21%), Query Frame = 0
Query:    1 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASELMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCRVVSYLGDAGEHADVPTPAILKPVALWTGKQAMSLMVRPSKENNILVNFESKEKNYRGNRFLCPSDG 152
            MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEAR EA  LM V  NL+TPRNGEPLVAATQDFLTA+YL+TQ++IFF+RE FC+V+S + DA EH ++P PAI+ PV LWTGKQ +SL+V+P+++  +LVN E KE+NY   ++LC  DG
Sbjct:  495 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARTEAITLMGVEENLITPRNGEPLVAATQDFLTASYLLTQKNIFFNREQFCQVLSIMSDANEHIELPRPAIVCPVRLWTGKQVISLLVKPNQDTTVLVNLELKERNYTDRKYLCWKDG 646          
BLAST of mRNA_H-canaliculatus_M_contigs9154.1.1 vs. uniprot
Match: F0WEL4_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Albugo TaxID=65356 RepID=F0WEL4_9STRA)

HSP 1 Score: 234 bits (597), Expect = 1.580e-68
Identity = 103/152 (67.76%), Postives = 128/152 (84.21%), Query Frame = 0
Query:    1 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASELMAVPYNLVTPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCRVVSYLGDAGEHADVPTPAILKPVALWTGKQAMSLMVRPSKENNILVNFESKEKNYRGNRFLCPSDG 152
            MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEAR EA  LM V +N++TPRNGEPLVAATQDFLTA+YL+TQ++IFF+RE FC++++ + DA EH D+P PAI+ P+ LWTGKQ +SL+++P+  + ILVN E KE+NY  N ++C  DG
Sbjct:  500 MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARTEALTLMGVEHNMITPRNGEPLVAATQDFLTASYLLTQKNIFFNREQFCQMIAIMSDAVEHIDIPEPAIIHPLRLWTGKQVISLLIKPNDFSKILVNLELKERNYTNNTYMCYKDG 651          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9154.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU80_ECTSI6.590e-9392.76DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A6H5KI81_9PHAE9.260e-9087.12DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A662WCJ9_9STRA3.300e-7171.05DNA-directed RNA polymerase subunit (Fragment) n=1... [more]
A0A662YIK9_9STRA5.950e-7171.05DNA-directed RNA polymerase subunit n=32 Tax=Peron... [more]
A0A836CEF0_9STRA8.030e-7170.81DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S2BSJ8_9STRA3.190e-7072.37DNA-directed RNA polymerase subunit (Fragment) n=1... [more]
A0A2D4BQB8_PYTIN1.320e-6968.42DNA-directed RNA polymerase subunit n=2 Tax=Pythiu... [more]
A0A397ELV8_9STRA8.300e-6966.45DNA-directed RNA polymerase n=1 Tax=Aphanomyces as... [more]
A0A484E7X0_BRELC8.460e-6969.74DNA-directed RNA polymerase subunit n=2 Tax=Bremia... [more]
F0WEL4_9STRA1.580e-6867.76DNA-directed RNA polymerase subunit n=2 Tax=Albugo... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006592RNA polymerase, N-terminalSMARTSM00663rpolaneu7coord: 1..73
e-value: 3.7E-4
score: -109.9
IPR042102RNA polymerase Rpb1, domain 3 superfamilyGENE3D1.10.274.100RNA polymerase Rpb1, domain 3coord: 53..152
e-value: 1.8E-27
score: 98.1
NoneNo IPR availableGENE3D2.40.40.20coord: 1..52
e-value: 1.1E-26
score: 95.4
NoneNo IPR availablePANTHERPTHR19376:SF32DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1coord: 1..136
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..146
IPR000722RNA polymerase, alpha subunitPFAMPF00623RNA_pol_Rpb1_2coord: 1..45
e-value: 4.1E-21
score: 75.9
IPR007066RNA polymerase Rpb1, domain 3PFAMPF04983RNA_pol_Rpb1_3coord: 48..135
e-value: 7.7E-20
score: 71.4
IPR045867DNA-directed RNA polymerase, subunit beta-primePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9154contigH-canaliculatus_M_contigs9154:708..2630 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-09-29
Diamond blastp: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-16
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9154.1.1mRNA_H-canaliculatus_M_contigs9154.1.1Hapterophycus canaliculatus Oshoro7m malemRNAH-canaliculatus_M_contigs9154 702..2630 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-canaliculatus_M_contigs9154.1.1 ID=prot_H-canaliculatus_M_contigs9154.1.1|Name=mRNA_H-canaliculatus_M_contigs9154.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=153bp
MPWRTFRFNECVCSPYNADFDGDEMNMHLPQTEEARAEASELMAVPYNLV
TPRNGEPLVAATQDFLTAAYLITQRDIFFDRETFCRVVSYLGDAGEHADV
PTPAILKPVALWTGKQAMSLMVRPSKENNILVNFESKEKNYRGNRFLCPS
DG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR045867DNA-dir_RpoC_beta_prime
IPR007066RNA_pol_Rpb1_3
IPR000722RNA_pol_asu
IPR042102RNA_pol_Rpb1_3_sf
IPR006592RNA_pol_N