mRNA_H-canaliculatus_M_contigs9995.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9995.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM3_ECTSI) HSP 1 Score: 174 bits (442), Expect = 1.430e-47 Identity = 122/164 (74.39%), Postives = 129/164 (78.66%), Query Frame = 1 Query: 1 SSMEGLVLVARAYGARKDWEAVTGVLATAEEACSAXXXXXXXXXXDDGGRGYA----KHPPAELYEVVARSLAFAGMWEEAASAVRRLERLPPRKIRQQRDSRDGAPPPAPRAPAAGLGTYEMILSAALAAGRPDAVLAQADAARAALREASSS--SSSAYDNG 474
SSMEGLVLVARAYGA KDW+AV GVLATAEEACS XXXXXXXXXX G R A KHPPAELYEV ARSLA AGMWEEAASAVRRLE+L PRK R+ + A R AAGLGTYEMIL AALAAG +AVLAQADAARAALR+ASSS SSS YD+G
Sbjct: 655 SSMEGLVLVARAYGAGKDWQAVLGVLATAEEACSXXXXXXXXXXXRGGERAAAVPAVKHPPAELYEVAARSLALAGMWEEAASAVRRLEKLSPRKTREGAGA-------AARTSAAGLGTYEMILGAALAAGCFEAVLAQADAARAALRDASSSPSSSSGYDHG 811 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9995.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs9995.1.1 >prot_H-canaliculatus_M_contigs9995.1.1 ID=prot_H-canaliculatus_M_contigs9995.1.1|Name=mRNA_H-canaliculatus_M_contigs9995.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=158bp MEGLVLVARAYGARKDWEAVTGVLATAEEACSAAAAAAAGVHDDDGGRGYback to top mRNA from alignment at H-canaliculatus_M_contigs9995:276..980+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs9995.1.1 ID=mRNA_H-canaliculatus_M_contigs9995.1.1|Name=mRNA_H-canaliculatus_M_contigs9995.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=705bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9995:276..980+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9995:276..980+ >mRNA_H-canaliculatus_M_contigs9995.1.1 ID=mRNA_H-canaliculatus_M_contigs9995.1.1|Name=mRNA_H-canaliculatus_M_contigs9995.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=474bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9995:276..980+ (Hapterophycus canaliculatus Oshoro7m male)back to top |