mRNA_H-canaliculatus_M_contigs9990.1.2 (mRNA) Hapterophycus canaliculatus Oshoro7m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs9990.1.2 vs.
Match: ABC (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I5_9PHAE) HSP 1 Score: 270 bits (691), Expect = 1.810e-87 Identity = 135/145 (93.10%), Postives = 140/145 (96.55%), Query Frame = 1 Query: 4 ADKYELVEETIQQLKLTNCADTRIGNEIHRGVSGGEKRRVSIGVDTVQQPTIIFLDEPTSGLDSTTALTIVETLSSVCKRNRTVAMTIHQPSTRVLDVFDKVMFLSRGRVVYFGSPAALPEYCSSLGKTPPSYSNIGEFFLEVVD 438 ADKYELVEETI+QLKLTNCADT+IGNEIHRGVSGGEKRRVSIGVDTVQQPTIIFLDEPTSGLDSTTALTI +TLSSVCKRNRTVAMTIHQPSTRVLDVFDKVMFLSRGRVVYFG PA LP YC+ LGKTPP+YSNIGEFFLEVVD Sbjct: 185 ADKYELVEETIRQLKLTNCADTKIGNEIHRGVSGGEKRRVSIGVDTVQQPTIIFLDEPTSGLDSTTALTIAQTLSSVCKRNRTVAMTIHQPSTRVLDVFDKVMFLSRGRVVYFGRPADLPAYCTGLGKTPPAYSNIGEFFLEVVD 329
BLAST of mRNA_H-canaliculatus_M_contigs9990.1.2 vs.
Match: ABC (transporter domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP97_ECTSI) HSP 1 Score: 271 bits (693), Expect = 2.740e-85 Identity = 135/145 (93.10%), Postives = 140/145 (96.55%), Query Frame = 1 Query: 4 ADKYELVEETIQQLKLTNCADTRIGNEIHRGVSGGEKRRVSIGVDTVQQPTIIFLDEPTSGLDSTTALTIVETLSSVCKRNRTVAMTIHQPSTRVLDVFDKVMFLSRGRVVYFGSPAALPEYCSSLGKTPPSYSNIGEFFLEVVD 438 ADKYELVEETI+QLKLTNCADT+IGNEIHRG+SGGEKRRVSIGVDTVQQPTIIFLDEPTSGLDSTTALTI ETLSSVCKRNRTVAMTIHQPSTRVLDVFDKVMFLSRGRVVYFG PA LP YC+ LGKTPP+YSNIGEFFLEVVD Sbjct: 202 ADKYELVEETIRQLKLTNCADTKIGNEIHRGISGGEKRRVSIGVDTVQQPTIIFLDEPTSGLDSTTALTIAETLSSVCKRNRTVAMTIHQPSTRVLDVFDKVMFLSRGRVVYFGRPADLPAYCTGLGKTPPAYSNIGEFFLEVVD 346
BLAST of mRNA_H-canaliculatus_M_contigs9990.1.2 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIY6_9STRA) HSP 1 Score: 194 bits (494), Expect = 2.600e-56 Identity = 96/145 (66.21%), Postives = 120/145 (82.76%), Query Frame = 1 Query: 7 DKYELVEETIQQLKLTNCADTRIGNEIHRGVSGGEKRRVSIGVDTVQQPTIIFLDEPTSGLDSTTALTIVETLSSVCKRNRTVAMTIHQPSTRVLDVFDKVMFLSRGRVVYFGSPAALPEYCSSLGKTP-PSYSNIGEFFLEVVD 438 DK+E+VE+TI+ LKLT CADT G++ HRGVSGGEKRRVSIGVD V QP+IIFLDEPTSGLDSTTAL IV+TL +C R+RT+A+TIHQPS+RV +VFDKVMF+S+G +VY G P+AL + + L K P P ++N+ E FLE+VD Sbjct: 164 DKWEVVEDTIRALKLTACADTICGDDRHRGVSGGEKRRVSIGVDIVHQPSIIFLDEPTSGLDSTTALQIVDTLKDICSRDRTIAVTIHQPSSRVFEVFDKVMFMSKGHLVYNGPPSALATHMTPLSKDPLPQFANLSELFLEIVD 308
BLAST of mRNA_H-canaliculatus_M_contigs9990.1.2 vs.
Match: P-loop (containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQT3_9STRA) HSP 1 Score: 190 bits (482), Expect = 7.060e-55 Identity = 95/146 (65.07%), Postives = 119/146 (81.51%), Query Frame = 1 Query: 4 ADKYELVEETIQQLKLTNCADTRIGNEIHRGVSGGEKRRVSIGVDTVQQPTIIFLDEPTSGLDSTTALTIVETLSSVCKRNRTVAMTIHQPSTRVLDVFDKVMFLSRGRVVYFGSPAALPEYCSSLGKTP-PSYSNIGEFFLEVVD 438 A K E+VEETI+ LKL+ CA+T +G++ HRGVSGGEKRRVSIGVD V QP IIFLDEPTSGLDSTTAL IVETL ++C+R+RT+A+TIHQPS+RV +VFDKVMF+S+G +VY G P L ++ + K P P ++N+ E FLEVVD Sbjct: 152 AQKKEVVEETIKALKLSACANTIVGDDRHRGVSGGEKRRVSIGVDIVHQPKIIFLDEPTSGLDSTTALQIVETLRAICQRDRTIAVTIHQPSSRVFEVFDKVMFMSKGHLVYNGPPTGLGDHLQVISKDPLPKFANLSELFLEVVD 297
BLAST of mRNA_H-canaliculatus_M_contigs9990.1.2 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KQH8_HETAK) HSP 1 Score: 160 bits (406), Expect = 1.250e-43 Identity = 83/147 (56.46%), Postives = 108/147 (73.47%), Query Frame = 1 Query: 4 ADKYELVEETIQQLKLTNCADTRIGNEIHRGVSGGEKRRVSIGVDTVQQPTIIFLDEPTSGLDSTTALTIVETLSSVCKRNRTVAMTIHQPSTRVLDVFDKVMFLSRGRVVYFGSPAALPEYC--SSLGKTPPSYSNIGEFFLEVVD 438 A+K E+V +T++ LKL ADT +G+E+ RG+SGGEKRRVSIGVDT+ QP +IFLDEPTSGLDS TAL+IVETL + + RTV +TIHQPS +V + F MFL+ G V+Y G ALP++ S L P ++N+ EFFLE+VD Sbjct: 160 AEKAEVVAQTLRALKLEGVADTVVGDELTRGLSGGEKRRVSIGVDTIHQPGLIFLDEPTSGLDSATALSIVETLDGLRQDGRTVVLTIHQPSMKVFNKFTTAMFLANGHVLYHGPTQALPDFITGSGLATEIPRFTNLPEFFLEIVD 306
BLAST of mRNA_H-canaliculatus_M_contigs9990.1.2 vs.
Match: ABC (transporter G family member 17-like n=1 Tax=Populus alba TaxID=43335 RepID=A0A4U5MNA2_POPAL) HSP 1 Score: 152 bits (383), Expect = 3.630e-42 Identity = 72/144 (50.00%), Postives = 102/144 (70.83%), Query Frame = 1 Query: 4 ADKYELVEETIQQLKLTNCADTRIGNEIHRGVSGGEKRRVSIGVDTVQQPTIIFLDEPTSGLDSTTALTIVETLSSVCKRNRTVAMTIHQPSTRVLDVFDKVMFLSRGRVVYFGSPAALPEYCSSLGKTPPSYSNIGEFFLEVV 435 A+K V E + QL LT+ DT IGNE +RGVSGGE+RRVS+G D + +P+++FLDEPTSGLDST+A ++VE + + + + MTIHQPS R+ + D++ L+RGR++Y GSPAA+P Y S G+ P N E+FL+V+ Sbjct: 120 AEKKNRVHELLHQLGLTSATDTYIGNEGNRGVSGGERRRVSVGTDIIHKPSLLFLDEPTSGLDSTSAYSVVEKVKDIARGGSIILMTIHQPSFRIQMLLDRITILARGRLIYMGSPAAIPNYLSRFGRPLPDGENSIEYFLDVI 263
BLAST of mRNA_H-canaliculatus_M_contigs9990.1.2 vs.
Match: ABC (transporter domain-containing protein n=12 Tax=Brassiceae TaxID=981071 RepID=M4F2Q4_BRARP) HSP 1 Score: 157 bits (398), Expect = 3.660e-42 Identity = 78/142 (54.93%), Postives = 103/142 (72.54%), Query Frame = 1 Query: 10 KYELVEETIQQLKLTNCADTRIGNEIHRGVSGGEKRRVSIGVDTVQQPTIIFLDEPTSGLDSTTALTIVETLSSVCKRNRTVAMTIHQPSTRVLDVFDKVMFLSRGRVVYFGSPAALPEYCSSLGKTPPSYSNIGEFFLEVV 435 K E V+ I QL L N ADT IG+E HRGVSGGE+RRVSIG+D + P ++FLDEPTSGLDS+ A +V+ L + + V M+IHQPSTR++D+ D+++ LSRG+ V+ GSPA+LP + S+LG T P NI EF L+VV Sbjct: 189 KMERVQALIDQLGLRNAADTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSSNAFMVVQVLKRIAQSGSIVVMSIHQPSTRIIDLLDRLIILSRGKNVFSGSPASLPNFFSNLGHTIPEKENITEFALDVV 330
BLAST of mRNA_H-canaliculatus_M_contigs9990.1.2 vs.
Match: ABC (transporter domain-containing protein n=1 Tax=Brassica rapa subsp. pekinensis TaxID=51351 RepID=M4DE55_BRARP) HSP 1 Score: 155 bits (392), Expect = 1.390e-41 Identity = 78/142 (54.93%), Postives = 99/142 (69.72%), Query Frame = 1 Query: 10 KYELVEETIQQLKLTNCADTRIGNEIHRGVSGGEKRRVSIGVDTVQQPTIIFLDEPTSGLDSTTALTIVETLSSVCKRNRTVAMTIHQPSTRVLDVFDKVMFLSRGRVVYFGSPAALPEYCSSLGKTPPSYSNIGEFFLEVV 435 K E VE I QL L N ADTRIG+E HRGVSGGE+RRVSIG+D + P ++FLDEPTSGLDST A +V+ L + + V M+IHQPS R+LD+ D+++ LSRG+ V+ GSPA LP + S G P NI EF L++V Sbjct: 319 KMERVEALIDQLGLRNAADTRIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTNAFMVVQVLKRIAQSGSIVIMSIHQPSARILDLLDRLIILSRGKSVFNGSPANLPSFFSDFGHPIPERENITEFSLDLV 460
BLAST of mRNA_H-canaliculatus_M_contigs9990.1.2 vs.
Match: ABC (transporter domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JN68_9BRAS) HSP 1 Score: 155 bits (393), Expect = 1.580e-41 Identity = 77/142 (54.23%), Postives = 100/142 (70.42%), Query Frame = 1 Query: 10 KYELVEETIQQLKLTNCADTRIGNEIHRGVSGGEKRRVSIGVDTVQQPTIIFLDEPTSGLDSTTALTIVETLSSVCKRNRTVAMTIHQPSTRVLDVFDKVMFLSRGRVVYFGSPAALPEYCSSLGKTPPSYSNIGEFFLEVV 435 K E VE I QL L N ADT IG+E HRGVSGGE+RRVSIG+D + P ++FLDEPTSGLDST A +V+ L + + V M+IHQPS R+LD+ D+++ LSRG+ V+ GSPA+LP + S G+ P NI EF L+V+ Sbjct: 182 KMERVESLIDQLGLRNAADTIIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTNAFMVVQVLKRIAQSGSIVMMSIHQPSARILDLLDRLIILSRGKSVFNGSPASLPSFFSDFGRPIPEKENITEFALDVI 323
BLAST of mRNA_H-canaliculatus_M_contigs9990.1.2 vs.
Match: ABC (transporter domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565BWG8_9BRAS) HSP 1 Score: 155 bits (393), Expect = 1.700e-41 Identity = 77/142 (54.23%), Postives = 100/142 (70.42%), Query Frame = 1 Query: 10 KYELVEETIQQLKLTNCADTRIGNEIHRGVSGGEKRRVSIGVDTVQQPTIIFLDEPTSGLDSTTALTIVETLSSVCKRNRTVAMTIHQPSTRVLDVFDKVMFLSRGRVVYFGSPAALPEYCSSLGKTPPSYSNIGEFFLEVV 435 K E VE I QL L N ADT IG+E HRGVSGGEKRRVSIG+D + P ++FLDEPTSGLDST A +V+ L + + V M+IHQPS R+LD+ D+++ LSRG+ V+ GSPA+LP + S G+ P NI EF L+++ Sbjct: 187 KMERVETLIDQLGLRNAADTVIGDEGHRGVSGGEKRRVSIGIDIIHDPIVLFLDEPTSGLDSTNAFMVVQVLKRIAQSGSIVIMSIHQPSARILDLLDRLIILSRGKSVFNGSPASLPRFLSDFGRRIPEKENITEFALDLI 328 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9990.1.2 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs9990.1.2 >prot_H-canaliculatus_M_contigs9990.1.2 ID=prot_H-canaliculatus_M_contigs9990.1.2|Name=mRNA_H-canaliculatus_M_contigs9990.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=146bp QADKYELVEETIQQLKLTNCADTRIGNEIHRGVSGGEKRRVSIGVDTVQQback to top mRNA from alignment at H-canaliculatus_M_contigs9990:855..2766+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs9990.1.2 ID=mRNA_H-canaliculatus_M_contigs9990.1.2|Name=mRNA_H-canaliculatus_M_contigs9990.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1912bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9990:855..2766+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9990:855..2766+ >mRNA_H-canaliculatus_M_contigs9990.1.2 ID=mRNA_H-canaliculatus_M_contigs9990.1.2|Name=mRNA_H-canaliculatus_M_contigs9990.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=438bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9990:855..2766+ (Hapterophycus canaliculatus Oshoro7m male)back to top |