mRNA_H-canaliculatus_M_contigs999.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs999.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1C6_9PHAE) HSP 1 Score: 288 bits (737), Expect = 1.070e-90 Identity = 176/291 (60.48%), Postives = 204/291 (70.10%), Query Frame = 1 Query: 1 LPVQLQVSSVLLRLSWRDSHTTKTAGATRAARFLASMPSGGRC-RRDSSAAPLF-YLPHHP-LASRAFGARSSDSATSTGDGDRIGSDAIVGAAQ---ETTKDPWGNHGKLIYEGSIAHQVRRLKRVSITTCFISFLAVPALVAFGKDSVPMAGQIAVMGTALAGTGGSTLLLNLCVSPYVFRMAEILNHGEGT-EDGDGVDKKRKNDKNRYGMRKPSGRRFRAERMNILGMRKTTEFSLDEVEPMPTTSRPFVSFKAGDAYYFIQGHDMADKSLLQTLLGRELKEHET*P 852 + +++ S VLL +S+ + A A +A LAS +G + R +S APL +L P L +RA S S S D D+ ++A Q ET KD WGN GKLIYEGS+AH VR LKRVSITTC IS LAVPALV +GK+SVP+AGQ+AVM AL GTG STLLLNLCVSPYVFRMAEI G EDG+ V KK +N NRYGM K SGRRFR ERMNI G+R+TTEFS+DEVEPMP TSRPFVSFKA +YYFIQGHDMADK LLQTLLGRELK+HE P Sbjct: 1 MATRIKASPVLLHVSFLSR---RAAAAPSSAPSLASSLAGLQYWRGNSKMAPLLCHLSRFPPLLTRA-----SFSTKSAKDDDKTATEAKAKVEQVSAETRKDQWGNRGKLIYEGSLAHPVRGLKRVSITTCLISILAVPALVMYGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGGVAQGEDGE-VRKKPRNKTNRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHEKRP 282
BLAST of mRNA_H-canaliculatus_M_contigs999.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID1_ECTSI) HSP 1 Score: 213 bits (541), Expect = 2.230e-63 Identity = 111/144 (77.08%), Postives = 121/144 (84.03%), Query Frame = 1 Query: 415 FGKDSVPMAGQIAVMGTALAGTGGSTLLLNLCVSPYVFRMAEILNHGEGT-EDGDGVDKKRKNDKNRYGMRKPSGRRFRAERMNILGMRKTTEFSLDEVEPMPTTSRPFVSFKAGDAYYFIQGHDMADKSLLQTLLGRELKEHE 843 +GK+SVP+AGQ+AVM AL GTG STLLLNLCVSPYVFRMAEI G EDGD V KK +N KNRYGM K SGRRFR ERMNI G+R+TTEFS+DEVEPMP TSRPFVSFKA +YYFIQGHDMADK LLQTLLGRELK+HE Sbjct: 2 YGKESVPVAGQVAVMSAALVGTGSSTLLLNLCVSPYVFRMAEIYEGGVAQGEDGD-VRKKPRNKKNRYGMPKLSGRRFRVERMNIFGVRRTTEFSIDEVEPMPNTSRPFVSFKAAGSYYFIQGHDMADKVLLQTLLGRELKDHE 144
BLAST of mRNA_H-canaliculatus_M_contigs999.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAD4_9STRA) HSP 1 Score: 146 bits (368), Expect = 5.820e-37 Identity = 81/178 (45.51%), Postives = 106/178 (59.55%), Query Frame = 1 Query: 310 KLIYEGSIAHQVRRLKRVSITTCFISFLAVPALVAFGKDSVPMAGQIAVMGTALAGTGGSTLLLNLCVSPYVFRMAEILNHGEGTEDGDGVDKKRKNDKNRYGMRKPSGRRFRAERMNILGMRKTTEFSLDEVEPMPTTSRPFVSFKAGDAYYFIQGHDMADKSLLQTLLGRELKEHE 843 +L+Y G + ++ LKRVSITTC +S + P L+ G DSVP++GQIAV G AL GST LL+ C PYV +++EI G +DK R F+AE ++ILG + TEF L +V+P P RPFVSFKA D YYFIQG + DK+LL+ LLGR L + E Sbjct: 48 ELLYIGPLTAPIKTLKRVSITTCAMSMIGTPLLLVLGNDSVPLSGQIAVTGVALTAAVGSTALLHWCTRPYVHKLSEITGRGA-------IDK---------------ARLFKAELLSILGRPRVTEFRLGDVQPQPDALRPFVSFKARDNYYFIQGEVLQDKALLKELLGRPLDDSE 203
BLAST of mRNA_H-canaliculatus_M_contigs999.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZQ4_PYTIN) HSP 1 Score: 84.7 bits (208), Expect = 5.210e-15 Identity = 53/199 (26.63%), Postives = 91/199 (45.73%), Query Frame = 1 Query: 265 GAAQETTKDPWGNHGKLIYEGSIAHQVRRLKRVSITTCFISFLAVPALVAFGKDSVPMAGQIAVMGTALAGTGGSTLLLNLCVSPYVFRMAEILNHGEGTEDGDGVDKKRKNDKNRYGMRKPSGRRFRAERMNILGMRKTTEFSLDEVEPMPTTSRPFVSFKAGDAYYFIQGHDMADKSLLQTLLGRELKEHET*PDSD 861 G + +T +L+Y+ +A VR +K VS+T+C ++ + +PAL + S + G+ A+ GT + G+T L ++ PYV RM +D+ S R AE + + TT+F+L +V P + P +SF+AG+ YFI + D L++ +G + K H D + Sbjct: 48 GLSSSSTSTXXATXPELVYQAPMARAVRLMKGVSVTSCALTLVGMPALCVLSEQSASIIGKWAMCGTIMLFGLGTTSLYHVLFKPYVMRMW--------------IDR--------------SENRVTAETVTLFARLTTTDFALGDVTRPPKSMHPMISFRAGEXDYFIHPECLQDDDLVKVFMGEDFKVHRATVDKE 218
BLAST of mRNA_H-canaliculatus_M_contigs999.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PEX5_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 5.240e-13 Identity = 54/175 (30.86%), Postives = 84/175 (48.00%), Query Frame = 1 Query: 319 YEGSIAHQVRRLKRVSITTCFISFLAVPALVAFGKDS-VPMAGQIAVMGTALAGTGGSTLLLNLCVSPYVFRMAEILNHGEGTEDGDGVDKKRKNDKNRYGMRKPSGRRFRAERMNILGMRKTTEFSLDEVEPMPTTSRPFVSFKAGDAYYFIQGHDMADKSLLQTLLGRELKEH 840 YEG + RLKRVS+TTCF+ +PA + S VPM GQ+AV GTA GSTLLL+ C +PYV ++ + E G VD ++K++ + RA +L T F + ++ RPF +F A + ++++ LL+ + + + H Sbjct: 4 YEGPFSSLALRLKRVSLTTCFVGTFGLPAALFVKHGSAVPMGGQLAVAGTAAVAAVGSTLLLSYCFNPYVHKLEYV-----DPETGTPVDTIAISEKDKTALH------IRATTRTLLSTELQTVFDPVNDVTVASSVRPFCNFVAAGVPMYCHPEILSEQRLLKVISAKSNRSH 167
BLAST of mRNA_H-canaliculatus_M_contigs999.1.1 vs.
Match: Predicted (protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SMY7_NEMVE) HSP 1 Score: 64.7 bits (156), Expect = 7.610e-9 Identity = 48/168 (28.57%), Postives = 79/168 (47.02%), Query Frame = 1 Query: 316 IYEGSIAHQVRRLKRVSITTCFISFLAVPALVAFGKDSVPMAGQIAVMGT-ALAGTGGSTLLLNLCVSPYVFRMAEILNHGEGTEDGDGVDKKRKNDKNRYGMRKPSGRRFRAERMNILGMRKTTEFSLDEVEPMPTTSRPFVSFKAGDAYYFIQGHDMADKSLLQTL 816 +YEG ++ VR +K S+TT F S + P LV FGK SVP+AG++A+ G L GT +T+LL+ YV +M PS + F + ++ G + +EF++++V P+ F +F+A +FI + + +L L Sbjct: 1 VYEGPLSKSVRYVKTFSLTTAFASIVGSPILVYFGKQSVPLAGKLAIAGLLCLVGTS-TTILLHWFTKGYVHKM----------------------------YFDPSKQMFSVDTLSFFGRPQRSEFTVNDVV-FPSEESAFKTFEANGKPFFIHQEMVEAQQVLHYL 138
BLAST of mRNA_H-canaliculatus_M_contigs999.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KK78_SPIIN) HSP 1 Score: 61.6 bits (148), Expect = 5.860e-7 Identity = 47/170 (27.65%), Postives = 79/170 (46.47%), Query Frame = 1 Query: 313 LIYEGSIAHQVRRLKRVSITTCFISFLAVPALVAFGKDSVPMAGQIAVMGTALAGTGGSTLLLNLCVSPYVFRMAEILNHGEGTEDGDGVDKKRKNDKNRYGMRKPSGRRFRAERMNILG--MRKTTEFSLDEVEPMPTTSRPFVSFKAGDAYYFIQGHDMADKSLLQTL 816 L+Y G I+ ++++K +S++TC +S P + + + + AV T + + +T L+ VSPYV ++ R+ +P F E ++ L + +T F+ +V P P T RPFV+FKAG +YF+ G DK+LL L Sbjct: 100 LVYRGPISSTIKKVKLLSLSTCCLSVSLGPVITFMTSPEMNVILKGAVASTVIFLSASTTAALHWFVSPYVHKL-------------------------RW---RPGADSFDVEMLSWLATPLPRTVRFA--DVRP-PQTQRPFVTFKAGGDFYFVDGEHFRDKALLARL 238
BLAST of mRNA_H-canaliculatus_M_contigs999.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427BB02_ENSVE) HSP 1 Score: 62.0 bits (149), Expect = 8.250e-7 Identity = 47/181 (25.97%), Postives = 80/181 (44.20%), Query Frame = 1 Query: 274 QETTKDPWGNHGKLIYEGSIAHQVRRLKRVSITTCFISFLAVPALVAFGKDSVPMAGQIAVMGTALAGTGGSTLLLNLCVSPYVFRMAEILNHGEGTEDGDGVDKKRKNDKNRYGMRKPSGRRFRAERMNILGMRKTTEFSLDEVEPMPTTSRPFVSFKAGDAYYFIQGHDMADKSLLQTL 816 +ET KD G IY+G I+ ++++K +S++TC +S P + + + + AV T + + +T L+ VSPY+ ++ R+ +P F E M+ L ++ P P T+RPFV+FKAG +YF+ +K+LL L Sbjct: 159 EETKKD--GKETGFIYQGPISSTIKKVKLLSLSTCCLSVSLGPVITFMTSPGMNVILKGAVASTVILLSASTTAALHWFVSPYIHKL-------------------------RW---QPGSDNFEVEMMSWLATPVPRTIKFADIRP-PETNRPFVTFKAGGNFYFVDVEHCHNKALLARL 308
BLAST of mRNA_H-canaliculatus_M_contigs999.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8IXB6_SPIIN) HSP 1 Score: 56.2 bits (134), Expect = 3.360e-5 Identity = 45/166 (27.11%), Postives = 76/166 (45.78%), Query Frame = 1 Query: 325 GSIAHQVRRLKRVSITTCFISFLAVPALVAFGKDSVPMAGQIAVMGTALAGTGGSTLLLNLCVSPYVFRMAEILNHGEGTEDGDGVDKKRKNDKNRYGMRKPSGRRFRAERMNILG--MRKTTEFSLDEVEPMPTTSRPFVSFKAGDAYYFIQGHDMADKSLLQTL 816 G I+ ++++K +S++TC +S P + + + + AV T + + +T L+ VSPYV ++ R+ +P F E ++ L + +T F+ +V P P T RPFV+FKAG +YF+ G DK+LL L Sbjct: 95 GPISSTIKKVKLLSLSTCCLSVSLGPVITFMTSPEMNVILKGAVASTVIFLSASTTAALHWFVSPYVHKL-------------------------RW---RPGADSFDVEMLSWLATPLPRTVRFA--DVRP-PQTQRPFVTFKAGGDFYFVDGEHFRDKALLARL 229 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs999.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 9 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs999.1.1 >prot_H-canaliculatus_M_contigs999.1.1 ID=prot_H-canaliculatus_M_contigs999.1.1|Name=mRNA_H-canaliculatus_M_contigs999.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=247bp MPSGGRCRRDSSAAPLFYLPHHPLASRAFGARSSDSATSTGDGDRIGSDAback to top mRNA from alignment at H-canaliculatus_M_contigs999:1511..4174+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs999.1.1 ID=mRNA_H-canaliculatus_M_contigs999.1.1|Name=mRNA_H-canaliculatus_M_contigs999.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2664bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs999:1511..4174+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs999:1511..4174+ >mRNA_H-canaliculatus_M_contigs999.1.1 ID=mRNA_H-canaliculatus_M_contigs999.1.1|Name=mRNA_H-canaliculatus_M_contigs999.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=741bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs999:1511..4174+ (Hapterophycus canaliculatus Oshoro7m male)back to top |