mRNA_H-canaliculatus_M_contigs9987.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9987.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9987.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9987.1.1 vs.
Match: Protein (ARV n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLH4_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 1.770e-65
Identity = 138/194 (71.13%), Postives = 143/194 (73.71%), Query Frame = 1 
Query:    1 MASGRATDTVSMVGSVSLAEQXXXXXXXXXXMTKAAPSLVCVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIECEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFHGRLWQLGVAMAALDAHLRHTALSSEAAAAALEISGNISAADGGSGARDPFWEAGGLLLAAVIEHACFAAGAVLCATSRVRSAA 582
            MA G + +T+SM GS SLAEQXXXXXXXXXX  +     VCVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIE EFVLIAIDLALHRVQAYRHLLFNMRPFSTHSF GRLWQLGV MAALDAHLRHTALSSEA                                  V EHACFAAGAVL ATSRVR+AA
Sbjct:    1 MAVGSSAETMSMKGSASLAEQXXXXXXXXXXXARP---FVCVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIEWEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFRGRLWQLGVGMAALDAHLRHTALSSEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV-EHACFAAGAVLFATSRVRAAA 190
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BLAST of mRNA_H-canaliculatus_M_contigs9987.1.1 vs.
Match: Protein (ARV (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CNP5_9STRA)

HSP 1 Score: 103 bits (257), Expect = 7.350e-25
Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 1 
Query:  112 SLVCVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIECEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFHGRLWQLGVAMAALD 375
            +++CV CGR ++ +FREY+KGNIRL RC +C++VADKYIE E VLIAID+ LHR+  YRHLLFN   +  H     +  + +A+  LD
Sbjct:   14 AMICVVCGRSLSHVFREYSKGNIRLSRCDHCKNVADKYIEYELVLIAIDMVLHRISVYRHLLFNRLEYQEHGVPRPIVMIAIAILCLD 101
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BLAST of mRNA_H-canaliculatus_M_contigs9987.1.1 vs.
Match: Protein (ARV n=1 Tax=Salix suchowensis TaxID=1278906 RepID=A0A836DLE2_9ROSI)

HSP 1 Score: 104 bits (259), Expect = 4.120e-24
Identity = 49/87 (56.32%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:  121 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIECEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFHGRLWQLGVAMAALDAH 381
            CVECG P+  LF +Y+ GNIRL RC  C++VAD+YIECEF++I+IDL LH+ +AYRHLLFN+    T +F G LW+   A   LDA+
Sbjct:   16 CVECGFPIKTLFVQYSPGNIRLMRCENCKAVADEYIECEFMIISIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAY 102
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BLAST of mRNA_H-canaliculatus_M_contigs9987.1.1 vs.
Match: Protein (ARV n=7 Tax=Populus TaxID=3689 RepID=A0A3N7FYG6_POPTR)

HSP 1 Score: 103 bits (257), Expect = 6.090e-24
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:  121 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIECEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFHGRLWQLGVAMAALDAH 381
            CVECG P+  LF +Y+ GNIRL RC  C++VAD+YIECEF++I IDL LH+ +AYRHLLFN+    T +F G LW+   A   LDA+
Sbjct:    5 CVECGFPIKTLFVQYSPGNIRLMRCENCKAVADEYIECEFMIILIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAY 91
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9987.1.1 vs.
Match: Protein (ARV n=9 Tax=Populus TaxID=3689 RepID=A0A3N7G147_POPTR)

HSP 1 Score: 103 bits (257), Expect = 1.350e-23
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:  121 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIECEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFHGRLWQLGVAMAALDAH 381
            CVECG P+  LF +Y+ GNIRL RC  C++VAD+YIECEF++I IDL LH+ +AYRHLLFN+    T +F G LW+   A   LDA+
Sbjct:    5 CVECGFPIKTLFVQYSPGNIRLMRCENCKAVADEYIECEFMIILIDLILHKTKAYRHLLFNVINQHTVNFEGSLWKSIFAFLLLDAY 91
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9987.1.1 vs.
Match: Protein (ARV n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MPP1_RHIMU)

HSP 1 Score: 97.8 bits (242), Expect = 3.070e-22
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:  121 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIECEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFHGRLWQLGVAMAALDAH 381
            CV+CG  +  LF +Y+ GNIRL +C  C++VAD+YIECEF++I IDL LH+ QAYRHLL+N+    T +F G LW+  +    LDA+
Sbjct:    6 CVKCGFRIKTLFVQYSPGNIRLMKCENCKAVADEYIECEFMIILIDLILHKPQAYRHLLYNVLFQETVNFQGLLWKSTIGFLVLDAY 92
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BLAST of mRNA_H-canaliculatus_M_contigs9987.1.1 vs.
Match: Protein (ARV n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPQ8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.070e-21
Identity = 49/107 (45.79%), Postives = 73/107 (68.22%), Query Frame = 1 
Query:  103 AAPSLV----------CVECGRPVAL-LFREYNKGNIRLGRCSYCRSVADKYIECEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFHGRLWQLGVAMAALDAHLRH 390
            AAP+LV          C+ECG+PV   L+REY+K NIRL RC +C +VAD+ IE E VL+ +DLALHR+ A+RH+LFN +P +   F  +LW++ + +  +D H+++
Sbjct:   30 AAPALVTIHGDDGCSLCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEF-AQLWRMALVLTLVDTHIKY 135
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BLAST of mRNA_H-canaliculatus_M_contigs9987.1.1 vs.
Match: Protein (ARV n=6 Tax=Phaseoleae TaxID=163735 RepID=A0A1S3TC60_VIGRR)

HSP 1 Score: 98.2 bits (243), Expect = 2.130e-21
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 1 
Query:  121 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIECEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFHGRLWQLGVAMAALDAH 381
            C++CG PV  L+ +Y+ GNIRL +C  CR+VAD+YIECE +++ IDL LH+ +AYRHLL N+    T  F G LW+L +     +AH
Sbjct:    5 CIQCGCPVKTLYVQYSPGNIRLMKCENCRAVADEYIECEIMILVIDLILHKPKAYRHLLHNVINQKTMKFQGLLWKLAIVFLLFEAH 91
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9987.1.1 vs.
Match: Protein (ARV n=4 Tax=Vitis TaxID=3603 RepID=D7U850_VITVI)

HSP 1 Score: 97.8 bits (242), Expect = 2.990e-21
Identity = 44/89 (49.44%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:  115 LVCVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIECEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFHGRLWQLGVAMAALDAH 381
            L C+ CG P+  LF +Y+ GNIRL +C  C++VAD+YIECE +++ IDL LH+ +AYRHLLFN+    T +F G LW+  +    LDA+
Sbjct:    3 LRCIHCGFPIKTLFLQYSPGNIRLMKCENCKAVADEYIECESMIVLIDLILHKPKAYRHLLFNLLNPQTLNFQGLLWKSALGFLLLDAY 91
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs9987.1.1 vs.
Match: Protein (ARV n=12 Tax=Glomeraceae TaxID=36751 RepID=A0A2I1G244_9GLOM)

HSP 1 Score: 95.9 bits (237), Expect = 5.730e-21
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:  121 CVECGRPVALLFREYNKGNIRLGRCSYCRSVADKYIECEFVLIAIDLALHRVQAYRHLLFNMRPFSTHSFHGRLWQLGVAMAALDAHLR 387
            CVECG PV  L+ EY+KGNIRL  C  C+  ADKY+E +FV+I ID+ LH+ Q YRHLLFN   +  H     +++LG+ +   D +++
Sbjct:    4 CVECGAPVTNLYTEYSKGNIRLTPCEKCKKFADKYVEHDFVIIFIDMLLHKPQVYRHLLFNRLEYRDHGIDPNVFKLGILLILFDVYIK 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9987.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Protein1.770e-6571.13ARV n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLH4_ECT... [more]
Protein7.350e-2552.27ARV (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 Tax... [more]
Protein4.120e-2456.32ARV n=1 Tax=Salix suchowensis TaxID=1278906 RepID=... [more]
Protein6.090e-2456.32ARV n=7 Tax=Populus TaxID=3689 RepID=A0A3N7FYG6_PO... [more]
Protein1.350e-2356.32ARV n=9 Tax=Populus TaxID=3689 RepID=A0A3N7G147_PO... [more]
Protein3.070e-2251.72ARV n=1 Tax=Rhizophora mucronata TaxID=61149 RepID... [more]
Protein1.070e-2145.79ARV n=1 Tax=Nannochloropsis gaditana TaxID=72520 R... [more]
Protein2.130e-2149.43ARV n=6 Tax=Phaseoleae TaxID=163735 RepID=A0A1S3TC... [more]
Protein2.990e-2149.44ARV n=4 Tax=Vitis TaxID=3603 RepID=D7U850_VITVI[more]
Protein5.730e-2147.19ARV n=12 Tax=Glomeraceae TaxID=36751 RepID=A0A2I1G... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9987contigH-canaliculatus_M_contigs9987:19..2232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LLH4
PFAMsArv1
Model size654
Max annot lvl2759|Eukaryota
KEGG koko:K21848
KEGG TC9.A.19.1
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.9e-66
EggNOG OGsCOG5254@1|root,KOG3134@2759|Eukaryota
Ec32 ortholog descriptionArv1 protein
Ec32 orthologEc-00_004620.1
Descriptionregulation of plasma membrane sterol distribution
Cds size654
COG categoryJ
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854238.373878-CDS-H-canaliculatus_M_contigs9987:18..3391696854238.373878-CDS-H-canaliculatus_M_contigs9987:18..339Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9987 19..339 -
1696854238.390791-CDS-H-canaliculatus_M_contigs9987:717..8551696854238.390791-CDS-H-canaliculatus_M_contigs9987:717..855Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9987 718..855 -
1696854238.403029-CDS-H-canaliculatus_M_contigs9987:2037..22321696854238.403029-CDS-H-canaliculatus_M_contigs9987:2037..2232Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9987 2038..2232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9987.1.1prot_H-canaliculatus_M_contigs9987.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9987 19..2232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9987.1.1

>prot_H-canaliculatus_M_contigs9987.1.1 ID=prot_H-canaliculatus_M_contigs9987.1.1|Name=mRNA_H-canaliculatus_M_contigs9987.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=218bp
MASGRATDTVSMVGSVSLAEQQQQQQQQQQQMTKAAPSLVCVECGRPVAL
LFREYNKGNIRLGRCSYCRSVADKYIECEFVLIAIDLALHRVQAYRHLLF
NMRPFSTHSFHGRLWQLGVAMAALDAHLRHTALSSEAAAAALEISGNISA
ADGGSGARDPFWEAGGLLLAAVIEHACFAAGAVLCATSRVRSAAAAAAAG
EAKVRRSRSRHSGGRRTR
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mRNA from alignment at H-canaliculatus_M_contigs9987:19..2232-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9987.1.1 ID=mRNA_H-canaliculatus_M_contigs9987.1.1|Name=mRNA_H-canaliculatus_M_contigs9987.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2214bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9987:19..2232- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCGAGTGGGAGGGCAACTGACACCGTGTCTATGGTGGGAAGCGTGAG
CTTGGCTGAACAGCAGCAGCAACAGCAACAGCAACAGCAGCAGATGACGA
AGGCGGCCCCATCTCTTGTGTGCGTAGAGTGCGGGCGGCCGGTCGCCCTT
CTCTTTCGAGAGTACAATAAGGGCAACATCCGCTTGGGGCGATGTGTGAG
TCTGCTTTGAGCGCTGTATACCATTGTCACCCACATTGTACAGGCCGCGA
GGCAGGAGAATATTTGATTGCTCGATGGTTTGCCTACCGTGCGTTGCGGC
AGTGGACGTTCCTAACGGTTGTTCTGATTTTCCAGCATGTGCGGGGCAAA
TTTCAAATTTTGATTCCGCCGCACGACGGCGATCCTACCATCCACCATCT
ACCATCCTGCGCCTACAGCGTTGCTACAGCGTTGCAATTCATCTATCTTC
CAGCGCATTGCTACAGCATTGCAACTCATCTATCTTCCAGCGCTGTCCGT
ACTAGTACAGTTGGTTTCACTGCTGTTGGTGTGTAGGATTTCTCCCCGTC
TTCAGATTCATTGTGAGGTTTGCGGAGAAATTGGTAACCCAAGTCGCCGT
TGGAATTTGTCCTCCCATGACATCGTGCGTCCTTTTCTCATCGCACCGTC
GACAGATCGCTGGACGAGTTACAGTACCATGTTTTCCTACCGCCTACCGT
CTTTTGATGGTCCGAGGGCAGAACGGTAATTGATGTCATTTTCTGTCGCA
GATAGCTCACGATCCTGTAGGCACCAGGTGTACCCGTGGGTGGGCCACCA
CAGGGTGTTTTGAAAAAGAAAATAACTCGTGTTGATGTCAGGCAGGGATG
ACTCGGGGAGAAACGGGTCTGAGCACGGTAGGGATAGCAGAGGTATAAGA
GTTCGGCTTGGTAGCTCCAGCATTTCGTTCGACCCCATGATCCAATAGTC
TGACGAGGCCTCTGTCTTGGAGAACCGTGAACGGCTTACATTTTTAGCGC
CCGGTTTCTGAAAAATAACCGGATTGGCGTCCCAACGGCACCCCTCGCGT
TCAACTACCGATATCGCCTTAACAGGATCGTTAACTTCTGGCATTTGTCC
TTTGGTCTTTTGCCACGAGCATGTGGTGGGATGTGCGATATTGAGCAATC
TTCTCGATCGAGAAAATCGTTCATTTGGCAGAGGGACATGAGCTGGTGAA
CGTCACGCCTCAAGGCATGCTTTCTTGTCGCTAGCGCTGTCTCATCTACC
CGCGAACATCCCAACTCCCCTGAAATCGGGCTTCCTTCCGATCCACGCAC
CACCACAGAGTCCCTGCCCCTCCCCATTCCGTGTTTGTCTTTGCTGCTCC
TGTTCGGACGCTCGCCCGTTCCCACAGAGCTACTGCCGCTCCGTGGCGGA
CAAGTACATCGAGTGCGAATTCGTCCTCATTGCGATCGACCTCGCCTTGC
ACCGCGTCCAGGCCTACCGGCACCTGCTCTTCAACATGAGGCCCTTCAGC
ACGCACAGTTTCCACGTGCGTCACAAACAATGTTTGGCTGGCCCATATCG
TTGGTGATTTCGATGTTTCGTCTGCTATCGCTTGGGTCGCGCATCAGCGT
GGCCCCCTCGCTCGGGCCGGCGCCGCTTGACACGACTATTCTGTTCTCGA
AGCAGCTCTGGGGTGGAGATAGGAAGGGCTCGCGCATAAGACGTTGCTGT
TTCAGCCGATTCGTTTGCTCAATTTTACGCCAGAGCCTCCACCGGTCGAT
GGTCTGCAACGTGAGGCACTGTACAGTACACACCGCGTCTCGTTTCCGCT
CCAGCGTGACTTTACAGCCCGCACGATCGTCACTAGATGCGGCCGAGCGA
AACTATAATGTACCATATCCAATACATGACGACTAATCAACAGGGGCGAT
TGTGGCAGCTGGGGGTCGCCATGGCAGCTCTCGATGCCCACCTTCGACAC
ACGGCGCTGTCCAGCGAGGCGGCGGCGGCGGCCCTGGAAATTTCTGGGAA
CATTTCTGCGGCCGACGGCGGCAGTGGTGCGCGGGACCCCTTTTGGGAAG
CAGGCGGGCTGCTGCTCGCCGCCGTGATCGAGCACGCGTGCTTCGCAGCC
GGGGCGGTCTTGTGCGCGACGAGTAGAGTACGCTCGGCGGCGGCGGCGGC
GGCGGCGGGGGAGGCAAAGGTGCGCCGGAGTCGAAGCCGCCATTCCGGCG
GAAGAAGAACTCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9987:19..2232-

>mRNA_H-canaliculatus_M_contigs9987.1.1 ID=mRNA_H-canaliculatus_M_contigs9987.1.1|Name=mRNA_H-canaliculatus_M_contigs9987.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9987:19..2232- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCGAGTGGGAGGGCAACTGACACCGTGTCTATGGTGGGAAGCGTGAG
CTTGGCTGAACAGCAGCAGCAACAGCAACAGCAACAGCAGCAGATGACGA
AGGCGGCCCCATCTCTTGTGTGCGTAGAGTGCGGGCGGCCGGTCGCCCTT
CTCTTTCGAGAGTACAATAAGGGCAACATCCGCTTGGGGCGATGTAGCTA
CTGCCGCTCCGTGGCGGACAAGTACATCGAGTGCGAATTCGTCCTCATTG
CGATCGACCTCGCCTTGCACCGCGTCCAGGCCTACCGGCACCTGCTCTTC
AACATGAGGCCCTTCAGCACGCACAGTTTCCACGGGCGATTGTGGCAGCT
GGGGGTCGCCATGGCAGCTCTCGATGCCCACCTTCGACACACGGCGCTGT
CCAGCGAGGCGGCGGCGGCGGCCCTGGAAATTTCTGGGAACATTTCTGCG
GCCGACGGCGGCAGTGGTGCGCGGGACCCCTTTTGGGAAGCAGGCGGGCT
GCTGCTCGCCGCCGTGATCGAGCACGCGTGCTTCGCAGCCGGGGCGGTCT
TGTGCGCGACGAGTAGAGTACGCTCGGCGGCGGCGGCGGCGGCGGCGGGG
GAGGCAAAGGTGCGCCGGAGTCGAAGCCGCCATTCCGGCGGAAGAAGAAC
TCGG
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