mRNA_H-canaliculatus_M_contigs998.3.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs998.3.1
Unique NamemRNA_H-canaliculatus_M_contigs998.3.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs998.3.1 vs.
Match: VPS13 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC24_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 2.720e-24
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:   10 QMDDVKMDFRAEQYEQALSLKDSLSALSNWQTFFPFRPKTTPLQDPKAWWR 162
            +MDDVKMDFRAEQYEQALSLKDS +AL+NWQ FFP+RPKTTP QDP+AWWR
Sbjct:  160 EMDDVKMDFRAEQYEQALSLKDSAAALANWQMFFPYRPKTTPKQDPRAWWR 210
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BLAST of mRNA_H-canaliculatus_M_contigs998.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5U0_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 2.130e-23
Identity = 43/51 (84.31%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:   10 QMDDVKMDFRAEQYEQALSLKDSLSALSNWQTFFPFRPKTTPLQDPKAWWR 162
            +MDDVKMDFRAEQYEQALSLKDS++AL+NWQTFFP+RPKTTP +DP+AWWR
Sbjct:  269 EMDDVKMDFRAEQYEQALSLKDSIAALANWQTFFPYRPKTTPKRDPRAWWR 319
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BLAST of mRNA_H-canaliculatus_M_contigs998.3.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPW3_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 7.710e-23
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:   10 QMDDVKMDFRAEQYEQALSLKDSLSALSNWQTFFPFRPKTTPLQDPKAWWRLVQYSV 180
            +MDDVKMDFRAEQYEQALSLKDS++AL+NWQTFFP+RPK TP +DP+AWWR     V
Sbjct:  265 EMDDVKMDFRAEQYEQALSLKDSIAALANWQTFFPYRPKATPKRDPRAWWRYAFLCV 321
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BLAST of mRNA_H-canaliculatus_M_contigs998.3.1 vs.
Match: Peroxin/Ferlin (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.180e-7
Identity = 21/44 (47.73%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   52 EQALSLKDSLSALSNWQTFFPFRPKTTPLQDPKAWWRLVQYSVA 183
            +QA  L+DS +A+ NW  F+P+RP+ +  +DPKAWWR     VA
Sbjct:  353 QQAFLLRDSAAAMRNWAVFYPYRPRVSIREDPKAWWRYAYTCVA 396
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs998.3.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
VPS132.720e-2484.31domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized2.130e-2384.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.710e-2375.44protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Peroxin/Ferlin2.180e-747.73domain-containing protein n=1 Tax=Tribonema minus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs998contigH-canaliculatus_M_contigs998:8937..9122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LPW3
PFAMsATG_C,Chorein_N,SHR-BD,VPS13,VPS13_C,VPS13_mid_rpt
Model size186
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.26e-23
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
Cds size186
COG categoryU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854237.9251323-CDS-H-canaliculatus_M_contigs998:8936..91221696854237.9251323-CDS-H-canaliculatus_M_contigs998:8936..9122Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs998 8937..9122 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs998.3.1prot_H-canaliculatus_M_contigs998.3.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs998 8937..9122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs998.3.1

>prot_H-canaliculatus_M_contigs998.3.1 ID=prot_H-canaliculatus_M_contigs998.3.1|Name=mRNA_H-canaliculatus_M_contigs998.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=62bp
MWCQMDDVKMDFRAEQYEQALSLKDSLSALSNWQTFFPFRPKTTPLQDPK
AWWRLVQYSVA*
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mRNA from alignment at H-canaliculatus_M_contigs998:8937..9122+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs998.3.1 ID=mRNA_H-canaliculatus_M_contigs998.3.1|Name=mRNA_H-canaliculatus_M_contigs998.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=186bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs998:8937..9122+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTGGTGCCAGATGGATGACGTCAAGATGGACTTCCGCGCGGAGCAGTA
CGAGCAGGCGCTCTCCCTCAAGGACTCTCTATCGGCCCTCTCCAACTGGC
AGACCTTCTTCCCCTTCCGTCCCAAGACAACTCCGCTTCAGGATCCAAAG
GCTTGGTGGAGGTTGGTGCAGTACAGCGTGGCATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs998:8937..9122+

>mRNA_H-canaliculatus_M_contigs998.3.1 ID=mRNA_H-canaliculatus_M_contigs998.3.1|Name=mRNA_H-canaliculatus_M_contigs998.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=186bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs998:8937..9122+ (Hapterophycus canaliculatus Oshoro7m male)
ATGTGGTGCCAGATGGATGACGTCAAGATGGACTTCCGCGCGGAGCAGTA
CGAGCAGGCGCTCTCCCTCAAGGACTCTCTATCGGCCCTCTCCAACTGGC
AGACCTTCTTCCCCTTCCGTCCCAAGACAACTCCGCTTCAGGATCCAAAG
GCTTGGTGGAGGTTGGTGCAGTACAGCGTGGCATAG
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